>gb|AC125517.4| Mus musculus BAC clone RP24-261P6 from chromosome 3, complete sequence
          Length = 193517

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 62     atactgagccagtgagctcca 82
              |||||||||||||||||||||
Sbjct: 141447 atactgagccagtgagctcca 141427

>gb|AC117200.3| Mus musculus BAC clone RP23-164N7 from 3, complete sequence
          Length = 220758

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 238    gtgcctgatgaggtagttgggggcagcca 266
              |||||||||||||| ||| ||||||||||
Sbjct: 126096 gtgcctgatgaggtggttaggggcagcca 126068

>emb|AL645630.9| Mouse DNA sequence from clone RP23-8C1 on chromosome 11, complete
              sequence
          Length = 167898

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 238    gtgcctgatgaggtagttgggggcagcca 266
              |||||||||||||| ||| ||||||||||
Sbjct: 118118 gtgcctgatgaggtggttaggggcagcca 118090

>gb|AC095996.9| Rattus norvegicus 18 BAC CH230-13K4 (Children's Hospital Oakland
            Research Institute Rat (BN/SsNHsd/MCW) BAC library)
            complete sequence
          Length = 54068

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 254  ttgggggcagccaaggaagc 273
            ||||||||||||||||||||
Sbjct: 4582 ttgggggcagccaaggaagc 4601

>gb|AC136645.2| Rattus norvegicus 7 BAC CH230-156H17 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 204000

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 356    cccctcgtgctcctcccagtctgt 379
              |||||||| |||||||||||||||
Sbjct: 194966 cccctcgttctcctcccagtctgt 194943

>emb|AL590666.8| Human DNA sequence from clone RP11-66D17 on chromosome 1 Contains the
             3' end of the SH2D2A gene for SH2 domain protein 2A, the
             PRCC gene for papillary renal cell carcinoma
             (translocation-associated), the HDGF gene for
             hepatoma-derived growth factor (high-mobility group
             protein 1-like), the MRPL24 gene for mitochondrial
             ribosomal protein L24, the gene for CGI-41 protein
             (CGI-41), a novel gene (FLJ12671), a novel gene, the
             CRABP2 gene for cellular retinoic acid binding protein 2,
             a novel gene, the gene for NES nestin, the 5' end of a
             novel gene, the 3' end of the BCAN gene for brevican and 5
             CpG islands, complete sequence
          Length = 160597

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 365   ctcctcccagtctgtggtcc 384
             ||||||||||||||||||||
Sbjct: 58439 ctcctcccagtctgtggtcc 58420

>emb|AL358092.26| Human DNA sequence from clone RP11-336A2 on chromosome 10, complete
             sequence
          Length = 103816

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 347   tccttcaggcccctcgtgctcctc 370
             ||||||||||||||| ||||||||
Sbjct: 10710 tccttcaggcccctcctgctcctc 10687

>gb|BC041833.1| Homo sapiens cDNA clone IMAGE:5268302
          Length = 1989

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 437 ggcaggccagggtctgtggatctt 460
           ||||||||||| ||||||||||||
Sbjct: 253 ggcaggccaggatctgtggatctt 276

>gb|AC022706.7| Homo sapiens chromosome , clone RP11-47L3, complete sequence
          Length = 162474

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    ctcctccccagctcgccccg 104
             ||||||||||||||||||||
Sbjct: 71011 ctcctccccagctcgccccg 70992

>dbj|AK057318.1| Homo sapiens cDNA FLJ32756 fis, clone TESTI2001758
          Length = 1948

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 437 ggcaggccagggtctgtggatctt 460
           ||||||||||| ||||||||||||
Sbjct: 231 ggcaggccaggatctgtggatctt 254

>ref|XM_942502.1| PREDICTED: Homo sapiens hypothetical protein LOC651172 (LOC651172),
           mRNA
          Length = 2367

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 437 ggcaggccagggtctgtggatctt 460
           ||||||||||| ||||||||||||
Sbjct: 655 ggcaggccaggatctgtggatctt 678

>ref|XM_926793.1| PREDICTED: Homo sapiens hypothetical protein LOC642757 (LOC642757),
           mRNA
          Length = 2368

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 437 ggcaggccagggtctgtggatctt 460
           ||||||||||| ||||||||||||
Sbjct: 655 ggcaggccaggatctgtggatctt 678

>gb|AC022916.11| Homo sapiens chromosome 17, clone RP11-799D4, complete sequence
          Length = 215786

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     ctcctccccagctcgccccg 104
              ||||||||||||||||||||
Sbjct: 210380 ctcctccccagctcgccccg 210361

>gb|AC007251.4| Homo sapiens BAC clone RP11-373G23 from 2, complete sequence
          Length = 180964

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 441  ggccagggtctgtggatctt 460
            ||||||||||||||||||||
Sbjct: 7113 ggccagggtctgtggatctt 7094

>emb|CR456602.1| Homo sapiens Em:U51561.2 full length open reading frame (ORF) cDNA
           clone (cDNA clone C22ORF:pGEM.Em:U51561.2)
          Length = 581

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 437 ggcaggccagggtctgtggatctt 460
           ||||||||||| ||||||||||||
Sbjct: 119 ggcaggccaggatctgtggatctt 142

>emb|AL049874.3|CNS0000Q Human chromosome 14 DNA sequence BAC R-1042B17 of library RPCI-11
            from chromosome 14 of Homo sapiens (Human), complete
            sequence
          Length = 193047

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 66   tgagccagtgagctccacac 85
            ||||||||||||||||||||
Sbjct: 7496 tgagccagtgagctccacac 7515

>gb|U51561.1|U51561 Homo sapiens cosmid clone N79E2 from 22q12, complete sequence
          Length = 39683

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 437   ggcaggccagggtctgtggatctt 460
             ||||||||||| ||||||||||||
Sbjct: 31596 ggcaggccaggatctgtggatctt 31573

>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 135     cgcgggcgcgcgtgcgcggc 154
               ||||||||||||||||||||
Sbjct: 1952829 cgcgggcgcgcgtgcgcggc 1952848


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,821,132
Number of Sequences: 3902068
Number of extensions: 2821132
Number of successful extensions: 60171
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60055
Number of HSP's gapped (non-prelim): 116
length of query: 467
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 445
effective length of database: 17,147,199,772
effective search space: 7630503898540
effective search space used: 7630503898540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)