ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl50b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ALF_ECHMU (Q9GP32) Fructose-bisphosphate aldolase (EC 4.1.2.13) 32 1.0
2NUOG_STRCO (Q9XAR0) NADH-quinone oxidoreductase chain G (EC 1.6.... 28 8.6
3PLDZ1_ARATH (P58766) Phospholipase D zeta (EC 3.1.4.4) (AtPLDzet... 28 8.6

>ALF_ECHMU (Q9GP32) Fructose-bisphosphate aldolase (EC 4.1.2.13)|
          Length = 363

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = -3

Query: 169 EPVTRLLPEEGVLPGVK-----TICSGGSESCACEGRDSSARRPVLLLSQYFS 26
           +P   LL E GVLPG+K         G ++ C  +G D+ A+R     +QY++
Sbjct: 92  KPFVELLRERGVLPGIKVDLGVVPLGGTADECTTQGLDNLAQR----CAQYYN 140



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>NUOG_STRCO (Q9XAR0) NADH-quinone oxidoreductase chain G (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain G) (NDH-1, chain G)
          Length = 843

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 216 DSAGQKMGCTVSLRLEKR--LTI*VTCRTSMILRALLLS*TEPLVEHGILVLLVTDDP 383
           D AG    C V +  +++   +  +TC   M+++  L S      +HG++ LL+ + P
Sbjct: 60  DPAGACRQCIVEVEGQRKPMASCTITCTDGMVVKTQLTSPVAEKAQHGVMELLLINHP 117



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>PLDZ1_ARATH (P58766) Phospholipase D zeta (EC 3.1.4.4) (AtPLDzeta) (PLD zeta)|
          Length = 820

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 27  EKYWERSSTGRRAELSLPSHAQLSDPPLQIV 119
           E+ W +  +GRR  +S+   A+++ PPL IV
Sbjct: 430 EQRWMKQGSGRRYLISMAQLAEITVPPLPIV 460


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,146,654
Number of Sequences: 219361
Number of extensions: 701974
Number of successful extensions: 2153
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2153
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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