>MED4_MOUSE (Q9CQA5) Mediator complex subunit 4 (Mediator of RNA polymerase II|
           transcription subunit 4)
          Length = 270

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -3

Query: 145 GNFGGNQLLDGSIS--LSPLYPSQTNDLHVSIASSLHQSFLWLRP 17
           G+  G+ L  G +   L+P YP Q+ND+ V++    H S   L P
Sbjct: 200 GHLPGDALAAGRLPDVLAPQYPWQSNDMSVNMLPPNHSSDFLLEP 244

>RS13_THEVO (Q97B96) 30S ribosomal protein S13P|
          Length = 171

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 334 GMNRKPGYGAQLRANLEPTKGVGRLRQQD 420
           G+  + GY    R NL+PTK +G L++ +
Sbjct: 54  GIGLRLGYAIAERLNLQPTKKIGELKEDE 82

>CCNL1_CHICK (Q5ZJP9) Cyclin-L1|
          Length = 534

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +2

Query: 254 GSAASVSRATESGAPSGPFLVSRTGDAG*TGSRVTVP 364
           GSAA+V+ A   G P+GP     T  A  TGS   VP
Sbjct: 6   GSAAAVA-AVAGGGPAGPHAAGVTAGAVTTGSGAPVP 41

>RF3_PHOLL (Q7MZN3) Peptide chain release factor 3 (RF-3)|
          Length = 529

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 145 GNFGGNQLLDGSISLSPL-YPSQTNDLHVSIASSLHQSFLW 26
           GNFG N +LDG +  +P   P QT+   VS        F++
Sbjct: 261 GNFGVNHMLDGLVKWAPAPMPRQTDVREVSAQEDKFTGFIF 301


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,402,890
Number of Sequences: 219361
Number of extensions: 1431588
Number of successful extensions: 3449
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3448
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)