>PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
          Length = 908

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 32/52 (61%), Positives = 41/52 (78%)
 Frame = +3

Query: 264 QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTL 419
           +LE+ V R  + D  + R ALE +R++IRS+T+SMTSVPKPLKFLRPHYG L
Sbjct: 55  ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKL 106

>PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
           (Tumor necrosis factor type 1 receptor-associated
           protein 2) (55.11 protein)
          Length = 908

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 32/52 (61%), Positives = 41/52 (78%)
 Frame = +3

Query: 264 QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTL 419
           +LE+ V R  + D  + R ALE +R++IRS+T+SMTSVPKPLKFLRPHYG L
Sbjct: 55  ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKL 106

>RPN1_SCHPO (P87048) 26S proteasome regulatory subunit rpn1 (Proteasome|
           non-ATPase subunit mts4) (19S regulatory cap region of
           26S protease subunit 2)
          Length = 891

 Score = 58.5 bits (140), Expect = 8e-09
 Identities = 29/51 (56%), Positives = 37/51 (72%)
 Frame = +3

Query: 267 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTL 419
           LEL V   QD  P +   +L  +++ IR++TSSMT+VPKPLKFLRPHY TL
Sbjct: 57  LELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTAVPKPLKFLRPHYFTL 107

>RPN1_NEUCR (Q7S8R8) 26S proteasome regulatory subunit rpn-1|
          Length = 883

 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 25/43 (58%), Positives = 35/43 (81%)
 Frame = +3

Query: 291 QDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTL 419
           Q+ D  + + ALE+M+  I+++TSSMT+VPKPLKFLRPHY T+
Sbjct: 48  QESDATLYKPALEAMKNSIKTSTSSMTAVPKPLKFLRPHYETM 90

>RPN1_YEAST (P38764) 26S proteasome regulatory subunit RPN1 (Proteasome|
           non-ATPase subunit 1)
          Length = 992

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 25/51 (49%), Positives = 37/51 (72%)
 Frame = +3

Query: 267 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTL 419
           LEL V R ++ D  +   +L ++++ I+++TSSMT+VPKPLKFLRP Y  L
Sbjct: 48  LELLVERLKEDDSSLYEASLNALKESIKNSTSSMTAVPKPLKFLRPTYPDL 98

>RPN1_CANGA (Q6FPV6) 26S proteasome regulatory subunit RPN1|
          Length = 983

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 23/51 (45%), Positives = 33/51 (64%)
 Frame = +3

Query: 267 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTL 419
           LE+ V    + D  +    L  +++ I+++TSSMT+VPKPLKFLRP Y  L
Sbjct: 49  LEMLVQTLLEDDSKLYETTLTQLKEFIKNSTSSMTAVPKPLKFLRPFYPDL 99

>ELL2_HUMAN (O00472) RNA polymerase II elongation factor ELL2|
          Length = 640

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 8   PTQQRRVASVPLAPRTLASP-PAPSPNRIRPASH 106
           PT ++  A +PL P   A P P P P+   P SH
Sbjct: 354 PTSEKSAAGLPLPPAAAAIPTPPPLPSTYLPISH 387

>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2161

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 8    PTQQRRVASVPLAPRTLASPPAPSPNRIRPA 100
            P ++  +A VPLAP    +PP+P+P R   A
Sbjct: 1129 PPKEGVLAQVPLAPPQPGAPPSPAPARFSTA 1159

>YKY4_CAEEL (Q17963) Hypothetical WD-repeat protein C14B1.4|
          Length = 376

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 8   PTQQRRVASVPLAPRTLASPPAP--SPNRIRPAS 103
           PTQQ    +VP AP   +S PAP  SPN I P++
Sbjct: 15  PTQQIDQLTVPNAPDGGSSAPAPSTSPNSISPSN 48

>YACF_SHIFL (Q83MF4) UPF0289 protein yacF|
          Length = 247

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +3

Query: 303 PGVQRLALESMRQEIRSATSSMTSVPKPLKFLR 401
           PGV +  +E++ Q++++A S + S P+  +FLR
Sbjct: 81  PGVDQSRIEALIQQLKAAVSVLISAPRIGQFLR 113


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,621,035
Number of Sequences: 219361
Number of extensions: 521239
Number of successful extensions: 2860
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2849
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)