>PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
          Length = 908

 Score = 77.0 bits (188), Expect = 2e-14
 Identities = 38/65 (58%), Positives = 48/65 (73%)
 Frame = +2

Query: 257 QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMP 436
           +LE+ V R  + D  + R ALE +R++IRS+T+SMTSVPKPLKFLRPHYG LK  YE+M 
Sbjct: 55  ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMA 114

Query: 437 ESELK 451
             E K
Sbjct: 115 PGENK 119

>PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
           (Tumor necrosis factor type 1 receptor-associated
           protein 2) (55.11 protein)
          Length = 908

 Score = 77.0 bits (188), Expect = 2e-14
 Identities = 38/65 (58%), Positives = 48/65 (73%)
 Frame = +2

Query: 257 QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMP 436
           +LE+ V R  + D  + R ALE +R++IRS+T+SMTSVPKPLKFLRPHYG LK  YE+M 
Sbjct: 55  ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMA 114

Query: 437 ESELK 451
             E K
Sbjct: 115 PGENK 119

>RPN1_SCHPO (P87048) 26S proteasome regulatory subunit rpn1 (Proteasome|
           non-ATPase subunit mts4) (19S regulatory cap region of
           26S protease subunit 2)
          Length = 891

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 34/65 (52%), Positives = 45/65 (69%)
 Frame = +2

Query: 260 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMPE 439
           LEL V   QD  P +   +L  +++ IR++TSSMT+VPKPLKFLRPHY TL   Y+S P+
Sbjct: 57  LELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTAVPKPLKFLRPHYFTLVKIYDSWPQ 116

Query: 440 SELKS 454
           S  K+
Sbjct: 117 SPQKT 121

>RPN1_NEUCR (Q7S8R8) 26S proteasome regulatory subunit rpn-1|
          Length = 883

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 29/58 (50%), Positives = 42/58 (72%)
 Frame = +2

Query: 284 QDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMPESELKST 457
           Q+ D  + + ALE+M+  I+++TSSMT+VPKPLKFLRPHY T+   Y+  P  + KS+
Sbjct: 48  QESDATLYKPALEAMKNSIKTSTSSMTAVPKPLKFLRPHYETMTKLYDEWPAGDDKSS 105

>RPN1_YEAST (P38764) 26S proteasome regulatory subunit RPN1 (Proteasome|
           non-ATPase subunit 1)
          Length = 992

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 29/66 (43%), Positives = 45/66 (68%)
 Frame = +2

Query: 260 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMPE 439
           LEL V R ++ D  +   +L ++++ I+++TSSMT+VPKPLKFLRP Y  L + Y+   +
Sbjct: 48  LELLVERLKEDDSSLYEASLNALKESIKNSTSSMTAVPKPLKFLRPTYPDLCSIYDKWTD 107

Query: 440 SELKST 457
             LKS+
Sbjct: 108 PNLKSS 113

>RPN1_CANGA (Q6FPV6) 26S proteasome regulatory subunit RPN1|
          Length = 983

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 26/66 (39%), Positives = 40/66 (60%)
 Frame = +2

Query: 260 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMPE 439
           LE+ V    + D  +    L  +++ I+++TSSMT+VPKPLKFLRP Y  L   Y+   +
Sbjct: 49  LEMLVQTLLEDDSKLYETTLTQLKEFIKNSTSSMTAVPKPLKFLRPFYPDLCKAYDKWSD 108

Query: 440 SELKST 457
            + KS+
Sbjct: 109 KDQKSS 114

>DMF1_SCHPO (P78953) Division mal foutue 1 protein|
          Length = 920

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = +2

Query: 263 ELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMPES 442
           ELY+  +++ +P +  +  +S++QE      S TS+PK     +  YG     Y  +P  
Sbjct: 357 ELYLQSSRNSEPEISTIINDSLQQENMDEDISATSIPKS----QAAYGHGSVTYHEVPRY 412

Query: 443 ELKSTWLTY 469
            L S  + Y
Sbjct: 413 NLTSASVGY 421

>UACA_MOUSE (Q8CGB3) Uveal autoantigen with coiled-coil domains and ankyrin|
           repeats protein (Nucling) (Nuclear membrane-binding
           protein)
          Length = 1411

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 257 QLELYVVRAQDVDPGVQ-RLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESM 433
           Q ++Y    Q   PG+   +   SM + +  +  S TS  +  + L+    TL+TYY+S 
Sbjct: 403 QGQMYTTEPQCASPGIPPHMHSRSMLRPLELSLPSQTSYSEN-EILKKELETLRTYYDSA 461

Query: 434 PESELK 451
            +  LK
Sbjct: 462 KQDRLK 467

>YACF_SHIFL (Q83MF4) UPF0289 protein yacF|
          Length = 247

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +2

Query: 296 PGVQRLALESMRQEIRSATSSMTSVPKPLKFLR 394
           PGV +  +E++ Q++++A S + S P+  +FLR
Sbjct: 81  PGVDQSRIEALIQQLKAAVSVLISAPRIGQFLR 113


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,093,331
Number of Sequences: 219361
Number of extensions: 456473
Number of successful extensions: 1721
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1721
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)