ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl47h09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF250767.1| Uncultured bacterium pCosFS1 ElsD (elsD) and ElsE... 44 0.10
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.10
3dbj|AP005126.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.10
4gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 44 0.10
5emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete ... 40 1.6
6emb|CR676645.2|CNS0FL29 Tetraodon nigroviridis full-length cDNA 38 6.3
7emb|CR675619.2|CNS0FKA1 Tetraodon nigroviridis full-length cDNA 38 6.3
8emb|CR674425.2|CNS0FJCV Tetraodon nigroviridis full-length cDNA 38 6.3
9emb|CR674229.2|CNS0FJ7F Tetraodon nigroviridis full-length cDNA 38 6.3
10emb|CR674199.2|CNS0FJ6L Tetraodon nigroviridis full-length cDNA 38 6.3
11emb|CR674004.2|CNS0FJ16 Tetraodon nigroviridis full-length cDNA 38 6.3
12emb|CR673127.2|CNS0FICT Tetraodon nigroviridis full-length cDNA 38 6.3
13emb|CR672595.2|CNS0FHY1 Tetraodon nigroviridis full-length cDNA 38 6.3
14emb|CR671683.2|CNS0FH8P Tetraodon nigroviridis full-length cDNA 38 6.3
15emb|CR670858.2|CNS0FGLS Tetraodon nigroviridis full-length cDNA 38 6.3
16emb|CR670788.2|CNS0FGJU Tetraodon nigroviridis full-length cDNA 38 6.3
17emb|CR669707.2|CNS0FFPT Tetraodon nigroviridis full-length cDNA 38 6.3
18emb|CR669359.2|CNS0FFG5 Tetraodon nigroviridis full-length cDNA 38 6.3
19emb|CR669010.2|CNS0FF6G Tetraodon nigroviridis full-length cDNA 38 6.3
20emb|CR666853.2|CNS0FDIJ Tetraodon nigroviridis full-length cDNA 38 6.3
21emb|CR664422.2|CNS0FBN0 Tetraodon nigroviridis full-length cDNA 38 6.3
22emb|CR662716.2|CNS0FABM Tetraodon nigroviridis full-length cDNA 38 6.3
23emb|CR662452.2|CNS0FA4A Tetraodon nigroviridis full-length cDNA 38 6.3
24emb|CR662158.2|CNS0F9W4 Tetraodon nigroviridis full-length cDNA 38 6.3
25emb|CR661197.2|CNS0F95F Tetraodon nigroviridis full-length cDNA 38 6.3
26emb|CR660161.2|CNS0F8CN Tetraodon nigroviridis full-length cDNA 38 6.3
27emb|CR658577.2|CNS0F74N Tetraodon nigroviridis full-length cDNA 38 6.3
28emb|CR657496.2|CNS0F6AM Tetraodon nigroviridis full-length cDNA 38 6.3
29emb|CR648969.2|CNS0EZPR Tetraodon nigroviridis full-length cDNA 38 6.3
30emb|CR647857.2|CNS0EYUV Tetraodon nigroviridis full-length cDNA 38 6.3
31emb|CR638496.2|CNS0ERMU Tetraodon nigroviridis full-length cDNA 38 6.3
32gb|AC146340.1| Genomic sequence for Oryza sativa, Nipponbare str... 38 6.3
33gb|AC090487.3| Genomic Sequence for Oryza sativa, Nipponbare str... 38 6.3
34emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete ... 38 6.3
35emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete ... 38 6.3
36tpg|BK000324.1| TPA: TPA_exp: Oryza sativa transposon Rim2-M43, ... 38 6.3
37dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.3
38dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.3
39dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic D... 38 6.3
40dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 38 6.3
41gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 38 6.3
42gb|AF019870.1| Plinthanthesis paradoxa internal transcribed spac... 38 6.3
43gb|U72725.1|OLRKLP2 Oryza longistaminata receptor kinase-like pr... 38 6.3 
>gb|AF250767.1| Uncultured bacterium pCosFS1 ElsD (elsD) and ElsE (elsE) genes,
            complete cds; and ElsF (elsF) gene, partial cds
          Length = 3500

 Score = 44.1 bits (22), Expect = 0.10
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 101  gtcggccggcgccgtactgaccctggccgt 130
            |||||||||| |||||||||||| ||||||
Sbjct: 3354 gtcggccggcaccgtactgacccgggccgt 3325
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.10
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 88       ccgcgcggcggtggtcggccggcgcc 113
                |||||||||||||| |||||||||||
Sbjct: 21838583 ccgcgcggcggtggccggccggcgcc 21838558
to top
>dbj|AP005126.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0041B22
          Length = 142446

 Score = 44.1 bits (22), Expect = 0.10
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 88    ccgcgcggcggtggtcggccggcgcc 113
             |||||||||||||| |||||||||||
Sbjct: 52259 ccgcgcggcggtggccggccggcgcc 52234
to top
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 44.1 bits (22), Expect = 0.10
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 85      acaccgcgcggcggtggtcggccggcgccg 114
               ||||||| |||| |||||||||||||||||
Sbjct: 2189350 acaccgcccggccgtggtcggccggcgccg 2189321
to top
>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29
          Length = 310550

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 92     gcggcggtggtcggccggcg 111
              ||||||||||||||||||||
Sbjct: 202677 gcggcggtggtcggccggcg 202696
to top
>emb|CR676645.2|CNS0FL29 Tetraodon nigroviridis full-length cDNA
          Length = 980

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 105 gccggcgccgtactgaccctggccgtg 131
           |||| ||||| ||||||||||||||||
Sbjct: 228 gccgccgccggactgaccctggccgtg 202
to top
>emb|CR675619.2|CNS0FKA1 Tetraodon nigroviridis full-length cDNA
          Length = 1010

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 105 gccggcgccgtactgaccctggccgtg 131
           |||| ||||| ||||||||||||||||
Sbjct: 419 gccgccgccggactgaccctggccgtg 393



 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 105 gccggcgccgtactgaccctggccgtg 131
           |||| ||||| ||||||||||||||||
Sbjct: 228 gccgccgccggactgaccctggccgtg 202
to top
>emb|CR674425.2|CNS0FJCV Tetraodon nigroviridis full-length cDNA
          Length = 910

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 105 gccggcgccgtactgaccctggccgtg 131
           |||| ||||| ||||||||||||||||
Sbjct: 212 gccgccgccggactgaccctggccgtg 186
to top
>emb|CR674229.2|CNS0FJ7F Tetraodon nigroviridis full-length cDNA
          Length = 981

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 105 gccggcgccgtactgaccctggccgtg 131
           |||| ||||| ||||||||||||||||
Sbjct: 227 gccgccgccggactgaccctggccgtg 201
to top
>emb|CR674199.2|CNS0FJ6L Tetraodon nigroviridis full-length cDNA
          Length = 977

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 105 gccggcgccgtactgaccctggccgtg 131
           |||| ||||| ||||||||||||||||
Sbjct: 227 gccgccgccggactgaccctggccgtg 201
to top
>emb|CR674004.2|CNS0FJ16 Tetraodon nigroviridis full-length cDNA
          Length = 942

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 105 gccggcgccgtactgaccctggccgtg 131
           |||| ||||| ||||||||||||||||
Sbjct: 228 gccgccgccggactgaccctggccgtg 202
to top
>emb|CR673127.2|CNS0FICT Tetraodon nigroviridis full-length cDNA
          Length = 981

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 105 gccggcgccgtactgaccctggccgtg 131
           |||| ||||| ||||||||||||||||
Sbjct: 228 gccgccgccggactgaccctggccgtg 202
to top
>emb|CR672595.2|CNS0FHY1 Tetraodon nigroviridis full-length cDNA
          Length = 944

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 105 gccggcgccgtactgaccctggccgtg 131
           |||| ||||| ||||||||||||||||
Sbjct: 227 gccgccgccggactgaccctggccgtg 201
to top
>emb|CR671683.2|CNS0FH8P Tetraodon nigroviridis full-length cDNA
          Length = 975

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 105 gccggcgccgtactgaccctggccgtg 131
           |||| ||||| ||||||||||||||||
Sbjct: 228 gccgccgccggactgaccctggccgtg 202
to top
>emb|CR670858.2|CNS0FGLS Tetraodon nigroviridis full-length cDNA
          Length = 981

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 105 gccggcgccgtactgaccctggccgtg 131
           |||| ||||| ||||||||||||||||
Sbjct: 228 gccgccgccggactgaccctggccgtg 202
to top
>emb|CR670788.2|CNS0FGJU Tetraodon nigroviridis full-length cDNA
          Length = 981

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 105 gccggcgccgtactgaccctggccgtg 131
           |||| ||||| ||||||||||||||||
Sbjct: 228 gccgccgccggactgaccctggccgtg 202
to top
>emb|CR669707.2|CNS0FFPT Tetraodon nigroviridis full-length cDNA
          Length = 980

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 105 gccggcgccgtactgaccctggccgtg 131
           |||| ||||| ||||||||||||||||
Sbjct: 228 gccgccgccggactgaccctggccgtg 202
to top
>emb|CR669359.2|CNS0FFG5 Tetraodon nigroviridis full-length cDNA
          Length = 981

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 105 gccggcgccgtactgaccctggccgtg 131
           |||| ||||| ||||||||||||||||
Sbjct: 228 gccgccgccggactgaccctggccgtg 202
to top
>emb|CR669010.2|CNS0FF6G Tetraodon nigroviridis full-length cDNA
          Length = 976

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 105 gccggcgccgtactgaccctggccgtg 131
           |||| ||||| ||||||||||||||||
Sbjct: 227 gccgccgccggactgaccctggccgtg 201
to top
>emb|CR666853.2|CNS0FDIJ Tetraodon nigroviridis full-length cDNA
          Length = 980

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 105 gccggcgccgtactgaccctggccgtg 131
           |||| ||||| ||||||||||||||||
Sbjct: 228 gccgccgccggactgaccctggccgtg 202
to top
>emb|CR664422.2|CNS0FBN0 Tetraodon nigroviridis full-length cDNA
          Length = 970

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 105 gccggcgccgtactgaccctggccgtg 131
           |||| ||||| ||||||||||||||||
Sbjct: 218 gccgccgccggactgaccctggccgtg 192
to top
>emb|CR662716.2|CNS0FABM Tetraodon nigroviridis full-length cDNA
          Length = 982

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 105 gccggcgccgtactgaccctggccgtg 131
           |||| ||||| ||||||||||||||||
Sbjct: 228 gccgccgccggactgaccctggccgtg 202
to top
>emb|CR662452.2|CNS0FA4A Tetraodon nigroviridis full-length cDNA
          Length = 981

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 105 gccggcgccgtactgaccctggccgtg 131
           |||| ||||| ||||||||||||||||
Sbjct: 230 gccgccgccggactgaccctggccgtg 204
to top
>emb|CR662158.2|CNS0F9W4 Tetraodon nigroviridis full-length cDNA
          Length = 984

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 105 gccggcgccgtactgaccctggccgtg 131
           |||| ||||| ||||||||||||||||
Sbjct: 229 gccgccgccggactgaccctggccgtg 203
to top
>emb|CR661197.2|CNS0F95F Tetraodon nigroviridis full-length cDNA
          Length = 981

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 105 gccggcgccgtactgaccctggccgtg 131
           |||| ||||| ||||||||||||||||
Sbjct: 228 gccgccgccggactgaccctggccgtg 202
to top
>emb|CR660161.2|CNS0F8CN Tetraodon nigroviridis full-length cDNA
          Length = 988

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 105 gccggcgccgtactgaccctggccgtg 131
           |||| ||||| ||||||||||||||||
Sbjct: 229 gccgccgccggactgaccctggccgtg 203
to top
>emb|CR658577.2|CNS0F74N Tetraodon nigroviridis full-length cDNA
          Length = 914

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 105 gccggcgccgtactgaccctggccgtg 131
           |||| ||||| ||||||||||||||||
Sbjct: 228 gccgccgccggactgaccctggccgtg 202
to top
>emb|CR657496.2|CNS0F6AM Tetraodon nigroviridis full-length cDNA
          Length = 981

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 105 gccggcgccgtactgaccctggccgtg 131
           |||| ||||| ||||||||||||||||
Sbjct: 229 gccgccgccggactgaccctggccgtg 203
to top
>emb|CR648969.2|CNS0EZPR Tetraodon nigroviridis full-length cDNA
          Length = 981

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 105 gccggcgccgtactgaccctggccgtg 131
           |||| ||||| ||||||||||||||||
Sbjct: 228 gccgccgccggactgaccctggccgtg 202
to top
>emb|CR647857.2|CNS0EYUV Tetraodon nigroviridis full-length cDNA
          Length = 976

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 105 gccggcgccgtactgaccctggccgtg 131
           |||| ||||| ||||||||||||||||
Sbjct: 222 gccgccgccggactgaccctggccgtg 196
to top
>emb|CR638496.2|CNS0ERMU Tetraodon nigroviridis full-length cDNA
          Length = 946

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 105 gccggcgccgtactgaccctggccgtg 131
           |||| ||||| ||||||||||||||||
Sbjct: 228 gccgccgccggactgaccctggccgtg 202
to top
>gb|AC146340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNAa0044A10, from chromosome 10, complete sequence
          Length = 173374

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 97     ggtggtcggccggcgccgt 115
              |||||||||||||||||||
Sbjct: 119970 ggtggtcggccggcgccgt 119952
to top
>gb|AC090487.3| Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0044I14, from Chromosome 10, complete sequence
          Length = 63167

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 97    ggtggtcggccggcgccgt 115
             |||||||||||||||||||
Sbjct: 56572 ggtggtcggccggcgccgt 56590
to top
>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29
          Length = 296500

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 110    cgccgtactgaccctggcc 128
              |||||||||||||||||||
Sbjct: 266295 cgccgtactgaccctggcc 266313
to top
>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29
          Length = 339650

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 93    cggcggtggtcggccggcg 111
             |||||||||||||||||||
Sbjct: 92101 cggcggtggtcggccggcg 92119
to top
>tpg|BK000324.1| TPA: TPA_exp: Oryza sativa transposon Rim2-M43, complete sequence
          Length = 1796

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 90   gcgcggcggtggtcggccggcgc 112
            |||||||||||| ||||||||||
Sbjct: 1273 gcgcggcggtggccggccggcgc 1295
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 97       ggtggtcggccggcgccgt 115
                |||||||||||||||||||
Sbjct: 13273721 ggtggtcggccggcgccgt 13273703
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 90      gcgcggcggtggtcggccggcgc 112
               |||||||||||| ||||||||||
Sbjct: 7077435 gcgcggcggtggccggccggcgc 7077457
to top
>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0452F10
          Length = 145120

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 90    gcgcggcggtggtcggccggcgc 112
             |||||||||||| ||||||||||
Sbjct: 65015 gcgcggcggtggccggccggcgc 65037
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 75     cccgccgcgtacaccgcgc 93
              |||||||||||||||||||
Sbjct: 559916 cccgccgcgtacaccgcgc 559934
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 97       ggtggtcggccggcgccgt 115
                |||||||||||||||||||
Sbjct: 13281061 ggtggtcggccggcgccgt 13281043
to top
>gb|AF019870.1| Plinthanthesis paradoxa internal transcribed spacer 1, 5.8S
           ribosomal RNA gene, and internal transcribed spacer 2,
           complete sequence
          Length = 607

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 89  cgcgcggcggtggtcggcc 107
           |||||||||||||||||||
Sbjct: 172 cgcgcggcggtggtcggcc 190
to top
>gb|U72725.1|OLRKLP2 Oryza longistaminata receptor kinase-like protein gene, family member
            A1, complete cds
          Length = 8416

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 89   cgcgcggcggtggtcggccggcg 111
            ||||||||||||||||| |||||
Sbjct: 1827 cgcgcggcggtggtcgggcggcg 1849


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 371,263
Number of Sequences: 3902068
Number of extensions: 371263
Number of successful extensions: 26724
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26213
Number of HSP's gapped (non-prelim): 511
length of query: 134
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 113
effective length of database: 17,151,101,840
effective search space: 1938074507920
effective search space used: 1938074507920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top