ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl47h07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence 72 1e-09
2ref|XM_521713.1| PREDICTED: Pan troglodytes similar to hypotheti... 42 1.2
3ref|NM_001012709.1| Homo sapiens keratin associated protein 5-4 ... 42 1.2
4gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 1.2
5gb|AC130310.17| Homo sapiens chromosome 11, clone RP11-269A12, c... 42 1.2
6dbj|AB126073.1| Homo sapiens KRTAP5-4 mRNA for keratin associate... 42 1.2
7dbj|AP006285.2| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 1.2
8gb|AC145958.3| Gallus gallus BAC clone CH261-16J12 from chromoso... 42 1.2
9gb|AY663543.1| Sus scrofa albumin gene, complete cds 40 4.9
10gb|AC141477.4| Mus musculus BAC clone RP23-386J14 from chromosom... 40 4.9
11gb|AC107685.7| Mus musculus chromosome 19, clone RP24-376I6, com... 40 4.9
12ref|NM_008787.3| Mus musculus pericentrin (kendrin) (Pcnt), tran... 40 4.9
13gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.9
14gb|AC140378.2| Mus musculus BAC clone RP24-84M18 from chromosome... 40 4.9
15emb|AL953897.6| Human DNA sequence from clone RP11-56N19 on chro... 40 4.9
16emb|AL834308.1|HSM805347 Homo sapiens mRNA; cDNA DKFZp434F1313 (... 40 4.9
17emb|AL833920.1|HSM805231 Homo sapiens mRNA; cDNA DKFZp434E1410 (... 40 4.9
18gb|AC093269.3| Homo sapiens chromosome 5 clone RP11-302I6, compl... 40 4.9
19gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 geno... 40 4.9
20gb|AC087277.11| Homo sapiens chromosome 11, clone RP11-514F3, co... 40 4.9
21gb|AC108460.5| Homo sapiens chromosome 11, clone CTD-2302A16, co... 40 4.9
22gb|AC021436.8| Homo sapiens chromosome , clone RP11-121C18, comp... 40 4.9
23ref|XM_938203.1| PREDICTED: Homo sapiens chromosome 1 open readi... 40 4.9
24ref|XM_209234.5| PREDICTED: Homo sapiens chromosome 1 open readi... 40 4.9
25gb|AC158618.5| Mus musculus 10 BAC RP23-280M4 (Roswell Park Canc... 40 4.9
26gb|AC008869.5| Homo sapiens chromosome 5 clone CTD-2194L12, comp... 40 4.9
27dbj|AK029906.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 4.9
28dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
29dbj|AK122275.2| Mus musculus mRNA for mKIAA0402 protein 40 4.9
30gb|AC019050.4| Homo sapiens BAC clone RP11-92K14 from 2, complet... 40 4.9
31gb|AC129502.10| Homo sapiens chromosome 11, clone RP11-1110F20, ... 40 4.9
32gb|AC091494.9| Oryza sativa chromosome 3 BAC OSJNBa0070N04 genom... 40 4.9
33gb|AC095023.2| Sus scrofa clone RP44-405I2, complete sequence 40 4.9 
>gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence
          Length = 184425

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                                 
Query: 132   tcctcctccctgagaagcaaggccggggctccctgt 167
             ||||||||||||||||||||||||||||||||||||
Sbjct: 62310 tcctcctccctgagaagcaaggccggggctccctgt 62345
to top
>ref|XM_521713.1| PREDICTED: Pan troglodytes similar to hypothetical gene supported
           by AY129010 (LOC466313), mRNA
          Length = 1143

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 286 tgctgctcctcctcaggttgt 306
           |||||||||||||||||||||
Sbjct: 28  tgctgctcctcctcaggttgt 8



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 287 gctgctcctcctcaggttgt 306
           ||||||||||||||||||||
Sbjct: 114 gctgctcctcctcaggttgt 95
to top
>ref|NM_001012709.1| Homo sapiens keratin associated protein 5-4 (KRTAP5-4), mRNA
          Length = 1359

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 286 tgctgctcctcctcaggttgt 306
           |||||||||||||||||||||
Sbjct: 802 tgctgctcctcctcaggttgt 822



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 286 tgctgctcctcctcaggttgt 306
           |||||||||||||||||||||
Sbjct: 715 tgctgctcctcctcaggttgt 735
to top
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 227     cccagttcggccggatctcgg 247
               |||||||||||||||||||||
Sbjct: 2648071 cccagttcggccggatctcgg 2648091
to top
>gb|AC130310.17| Homo sapiens chromosome 11, clone RP11-269A12, complete sequence
          Length = 155537

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 286   tgctgctcctcctcaggttgt 306
             |||||||||||||||||||||
Sbjct: 39071 tgctgctcctcctcaggttgt 39051



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 286   tgctgctcctcctcaggttgt 306
             |||||||||||||||||||||
Sbjct: 38984 tgctgctcctcctcaggttgt 38964
to top
>dbj|AB126073.1| Homo sapiens KRTAP5-4 mRNA for keratin associated protein, complete
           cds
          Length = 1359

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 286 tgctgctcctcctcaggttgt 306
           |||||||||||||||||||||
Sbjct: 802 tgctgctcctcctcaggttgt 822



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 286 tgctgctcctcctcaggttgt 306
           |||||||||||||||||||||
Sbjct: 715 tgctgctcctcctcaggttgt 735
to top
>dbj|AP006285.2| Homo sapiens genomic DNA, chromosome 11 clone:RP13-25N22, complete
              sequence
          Length = 190267

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 286    tgctgctcctcctcaggttgt 306
              |||||||||||||||||||||
Sbjct: 117016 tgctgctcctcctcaggttgt 116996



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 286    tgctgctcctcctcaggttgt 306
              |||||||||||||||||||||
Sbjct: 116929 tgctgctcctcctcaggttgt 116909
to top
>gb|AC145958.3| Gallus gallus BAC clone CH261-16J12 from chromosome unknown, complete
             sequence
          Length = 207441

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 291   ctcctcctcaggttgttccac 311
             |||||||||||||||||||||
Sbjct: 35271 ctcctcctcaggttgttccac 35251
to top
>gb|AY663543.1| Sus scrofa albumin gene, complete cds
          Length = 35317

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 136  cctccctgagaagcaaggcc 155
            ||||||||||||||||||||
Sbjct: 3167 cctccctgagaagcaaggcc 3148
to top
>gb|AC141477.4| Mus musculus BAC clone RP23-386J14 from chromosome 10, complete sequence
          Length = 213720

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 279    ccgcagttgctgctcctcct 298
              ||||||||||||||||||||
Sbjct: 151244 ccgcagttgctgctcctcct 151263
to top
>gb|AC107685.7| Mus musculus chromosome 19, clone RP24-376I6, complete sequence
          Length = 175566

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   tcctcctccctgagaagcaa 151
             ||||||||||||||||||||
Sbjct: 41448 tcctcctccctgagaagcaa 41467
to top
>ref|NM_008787.3| Mus musculus pericentrin (kendrin) (Pcnt), transcript variant 1, mRNA
          Length = 9530

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 279  ccgcagttgctgctcctcct 298
            ||||||||||||||||||||
Sbjct: 7296 ccgcagttgctgctcctcct 7277
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 280      cgcagttgctgctcctcctc 299
                ||||||||||||||||||||
Sbjct: 31937025 cgcagttgctgctcctcctc 31937006
to top
>gb|AC140378.2| Mus musculus BAC clone RP24-84M18 from chromosome 19, complete sequence
          Length = 194681

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 132    tcctcctccctgagaagcaa 151
              ||||||||||||||||||||
Sbjct: 108319 tcctcctccctgagaagcaa 108338
to top
>emb|AL953897.6| Human DNA sequence from clone RP11-56N19 on chromosome 1 Contains the
             3' end of a novel gene, the AGTRAP gene for angiotensin II
             receptor-associated protein, two novel genes, the MTHFR
             gene for 5,10-methylenetetrahydrofolate reductase (NADPH),
             the 5' end of the CLCN6 gene for chloride channel 6 and a
             CpG island, complete sequence
          Length = 102509

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   agcaaggccggggctccctg 166
             ||||||||||||||||||||
Sbjct: 62563 agcaaggccggggctccctg 62582
to top
>emb|AL834308.1|HSM805347 Homo sapiens mRNA; cDNA DKFZp434F1313 (from clone DKFZp434F1313)
          Length = 2714

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 147 agcaaggccggggctccctg 166
           ||||||||||||||||||||
Sbjct: 390 agcaaggccggggctccctg 409
to top
>emb|AL833920.1|HSM805231 Homo sapiens mRNA; cDNA DKFZp434E1410 (from clone DKFZp434E1410)
          Length = 2565

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 147  agcaaggccggggctccctg 166
            ||||||||||||||||||||
Sbjct: 1285 agcaaggccggggctccctg 1304
to top
>gb|AC093269.3| Homo sapiens chromosome 5 clone RP11-302I6, complete sequence
          Length = 132720

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 303   ttgttccacctttggccaat 322
             ||||||||||||||||||||
Sbjct: 30316 ttgttccacctttggccaat 30297
to top
>gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 genomic sequence, complete
             sequence
          Length = 144306

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   cgcagttgctgctcctcctc 299
             ||||||||||||||||||||
Sbjct: 28977 cgcagttgctgctcctcctc 28958
to top
>gb|AC087277.11| Homo sapiens chromosome 11, clone RP11-514F3, complete sequence
          Length = 196859

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 297  ctcaggttgttccacctttggcca 320
            ||||||||||| ||||||||||||
Sbjct: 2876 ctcaggttgtttcacctttggcca 2853
to top
>gb|AC108460.5| Homo sapiens chromosome 11, clone CTD-2302A16, complete sequence
          Length = 149148

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 138    tccctgagaagcaaggccgg 157
              ||||||||||||||||||||
Sbjct: 101844 tccctgagaagcaaggccgg 101825
to top
>gb|AC021436.8| Homo sapiens chromosome , clone RP11-121C18, complete sequence
          Length = 180765

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 138    tccctgagaagcaaggccgg 157
              ||||||||||||||||||||
Sbjct: 162257 tccctgagaagcaaggccgg 162238
to top
>ref|XM_938203.1| PREDICTED: Homo sapiens chromosome 1 open reading frame 167
            (C1orf167), mRNA
          Length = 5317

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 147  agcaaggccggggctccctg 166
            ||||||||||||||||||||
Sbjct: 2120 agcaaggccggggctccctg 2139
to top
>ref|XM_209234.5| PREDICTED: Homo sapiens chromosome 1 open reading frame 167
            (C1orf167), mRNA
          Length = 5317

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 147  agcaaggccggggctccctg 166
            ||||||||||||||||||||
Sbjct: 2120 agcaaggccggggctccctg 2139
to top
>gb|AC158618.5| Mus musculus 10 BAC RP23-280M4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 235639

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 279    ccgcagttgctgctcctcct 298
              ||||||||||||||||||||
Sbjct: 199804 ccgcagttgctgctcctcct 199785
to top
>gb|AC008869.5| Homo sapiens chromosome 5 clone CTD-2194L12, complete sequence
          Length = 227979

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 303    ttgttccacctttggccaat 322
              ||||||||||||||||||||
Sbjct: 219589 ttgttccacctttggccaat 219570
to top
>dbj|AK029906.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4931433K19 product:pericentrin, full
            insert sequence
          Length = 5014

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 279  ccgcagttgctgctcctcct 298
            ||||||||||||||||||||
Sbjct: 2792 ccgcagttgctgctcctcct 2773
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 280      cgcagttgctgctcctcctc 299
                ||||||||||||||||||||
Sbjct: 32027538 cgcagttgctgctcctcctc 32027519
to top
>dbj|AK122275.2| Mus musculus mRNA for mKIAA0402 protein
          Length = 6212

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 279  ccgcagttgctgctcctcct 298
            ||||||||||||||||||||
Sbjct: 3989 ccgcagttgctgctcctcct 3970
to top
>gb|AC019050.4| Homo sapiens BAC clone RP11-92K14 from 2, complete sequence
          Length = 153120

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 297   ctcaggttgttccacctttggcca 320
             ||||| ||||||||||||||||||
Sbjct: 97616 ctcagattgttccacctttggcca 97593
to top
>gb|AC129502.10| Homo sapiens chromosome 11, clone RP11-1110F20, complete sequence
          Length = 97538

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 297   ctcaggttgttccacctttggcca 320
             ||||||||||| ||||||||||||
Sbjct: 34524 ctcaggttgtttcacctttggcca 34547
to top
>gb|AC091494.9| Oryza sativa chromosome 3 BAC OSJNBa0070N04 genomic sequence, complete
              sequence
          Length = 150663

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 280    cgcagttgctgctcctcctc 299
              ||||||||||||||||||||
Sbjct: 138275 cgcagttgctgctcctcctc 138256
to top
>gb|AC095023.2| Sus scrofa clone RP44-405I2, complete sequence
          Length = 51739

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 297  ctcaggttgttccacctttggcca 320
            |||||||||||||| |||||||||
Sbjct: 6107 ctcaggttgttccagctttggcca 6084


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,924,621
Number of Sequences: 3902068
Number of extensions: 1924621
Number of successful extensions: 32797
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32722
Number of HSP's gapped (non-prelim): 75
length of query: 368
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 346
effective length of database: 17,147,199,772
effective search space: 5932931121112
effective search space used: 5932931121112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top