No.
Definition
Score (bits)
E Value
1 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...
125
1e-25
2 dbj|AP004140.3| Oryza sativa (japonica cultivar-group) genomic D...
125
1e-25
3 dbj|AK073793.1| Oryza sativa (japonica cultivar-group) cDNA clon...
125
1e-25
4 dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...
70
7e-09
5 dbj|AP005652.3| Oryza sativa (japonica cultivar-group) genomic D...
70
7e-09
6 dbj|AP004991.3| Oryza sativa (japonica cultivar-group) genomic D...
70
7e-09
7 gb|AF466199.1| Sorghum bicolor putative receptor protein kinase,...
62
2e-06
8 gb|AY530952.1| Zea mays unknown (Z576C20.2), putative heme oxyge...
62
2e-06
9 emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp...
44
0.40
10 dbj|AB189642.1| Halorhodospira halophila rnfA, nifA, nifB genes ...
42
1.6
11 gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
40
6.3
12 gb|AC084438.5| Homo sapiens BAC clone RP11-89D15 from 7, complet...
40
6.3
13 emb|Z98056.2|SPAC5D6 S.pombe chromosome I cosmid c5D6
40
6.3
14 gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
40
6.3
15 gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp...
40
6.3
16 gb|AC012055.9|AC012055 Homo sapiens chromosome 4, clone RP11-248...
40
6.3
17 dbj|AP003491.3| Oryza sativa (japonica cultivar-group) genomic D...
40
6.3
18 dbj|AP005387.3| Oryza sativa (japonica cultivar-group) genomic D...
40
6.3
19 gb|AC147184.3| Mus musculus BAC clone RP24-286F20 from 1, comple...
40
6.3
20 dbj|AP004503.1| Lotus japonicus genomic DNA, chromosome 5, clone...
40
6.3
>dbj|AP008208.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 125 bits (63), Expect = 1e-25
Identities = 108/123 (87%)
Strand = Plus / Plus
Query: 111 acgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtcc 170
||||| |||||||||||||| ||||||||| ||| ||||||| ||||||||| ||| ||
Sbjct: 32901846 acgctactggagatcaagaagtccttccgcaatgtggacaacgtgctgtacgattgggcc 32901905
Query: 171 ggcgacggggcgtccccgggctactgctcctggcgcggcgtgctctgcgacaacgtcacc 230
||||| || ||| | | | |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 32901906 ggcgatggcgcgccgcggcgctactgctcgtggcgcggcgtgctctgcgacaacgtcacc 32901965
Query: 231 ttc 233
|||
Sbjct: 32901966 ttc 32901968
Score = 71.9 bits (36), Expect = 2e-09
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 328 agtcgaatggactctccgggcagatccctgacgagattggtgattgctcgtcgcttaaaa 387
||||||||| ||| || |||||||||||||| |||||||| |||||| ||||||||||||
Sbjct: 32902251 agtcgaatgaactttctgggcagatccctgatgagattggcgattgcacgtcgcttaaaa 32902310
Score = 63.9 bits (32), Expect = 4e-07
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 394 acctgtcctccaaca-tctggaaggagacatacccttttccatatcgaagctgaagcacc 452
|||||||||| |||| ||| | |||||| ||||| ||||||||||| |||||||||||||
Sbjct: 32902414 acctgtcctctaacaatctaggaggagatataccattttccatatctaagctgaagcacc 32902473
Query: 453 ttga 456
||||
Sbjct: 32902474 ttga 32902477
Score = 58.0 bits (29), Expect = 3e-05
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 248 caacctctcagggttcaatctcggcggcgagatctccccggccttcggggatttgaagag 307
||||||||| ||| ||||||| || ||||| |||||||||||| ||||| || |||| ||
Sbjct: 32902067 caacctctcggggctcaatcttgggggcgaaatctccccggccatcgggaatctgaaaag 32902126
Query: 308 cgtcg 312
|||||
Sbjct: 32902127 cgtcg 32902131
>dbj|AP004140.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1534_E09
Length = 126209
Score = 125 bits (63), Expect = 1e-25
Identities = 108/123 (87%)
Strand = Plus / Plus
Query: 111 acgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtcc 170
||||| |||||||||||||| ||||||||| ||| ||||||| ||||||||| ||| ||
Sbjct: 56587 acgctactggagatcaagaagtccttccgcaatgtggacaacgtgctgtacgattgggcc 56646
Query: 171 ggcgacggggcgtccccgggctactgctcctggcgcggcgtgctctgcgacaacgtcacc 230
||||| || ||| | | | |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 56647 ggcgatggcgcgccgcggcgctactgctcgtggcgcggcgtgctctgcgacaacgtcacc 56706
Query: 231 ttc 233
|||
Sbjct: 56707 ttc 56709
Score = 71.9 bits (36), Expect = 2e-09
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 328 agtcgaatggactctccgggcagatccctgacgagattggtgattgctcgtcgcttaaaa 387
||||||||| ||| || |||||||||||||| |||||||| |||||| ||||||||||||
Sbjct: 56992 agtcgaatgaactttctgggcagatccctgatgagattggcgattgcacgtcgcttaaaa 57051
Score = 63.9 bits (32), Expect = 4e-07
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 394 acctgtcctccaaca-tctggaaggagacatacccttttccatatcgaagctgaagcacc 452
|||||||||| |||| ||| | |||||| ||||| ||||||||||| |||||||||||||
Sbjct: 57155 acctgtcctctaacaatctaggaggagatataccattttccatatctaagctgaagcacc 57214
Query: 453 ttga 456
||||
Sbjct: 57215 ttga 57218
Score = 58.0 bits (29), Expect = 3e-05
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 248 caacctctcagggttcaatctcggcggcgagatctccccggccttcggggatttgaagag 307
||||||||| ||| ||||||| || ||||| |||||||||||| ||||| || |||| ||
Sbjct: 56808 caacctctcggggctcaatcttgggggcgaaatctccccggccatcgggaatctgaaaag 56867
Query: 308 cgtcg 312
|||||
Sbjct: 56868 cgtcg 56872
>dbj|AP008212.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 69.9 bits (35), Expect = 7e-09
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 191 ctactgctcctggcgcggcgtgctctgcgacaacgtcaccttc 233
||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 5261305 ctactgctcgtggcgcggcgtcctctgcgacaacgtcaccttc 5261263
Score = 63.9 bits (32), Expect = 4e-07
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 111 acgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtcc 170
|||||||||||||||||||| ||||||||| ||| ||||||| |||||||| ||| ||
Sbjct: 5261373 acgctgctggagatcaagaagtccttccgcaatgtggacaacgtactgtacgattgggcc 5261314
Query: 171 ggcg 174
||||
Sbjct: 5261313 ggcg 5261310
Score = 52.0 bits (26), Expect = 0.002
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 328 agtcgaatggactctccgggcagatccctgacgagattggtgattg 373
|||||||||| || || |||||||||||||| |||||||| |||||
Sbjct: 5260982 agtcgaatgggctgtctgggcagatccctgatgagattggcgattg 5260937
Score = 40.1 bits (20), Expect = 6.3
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 210 gtgctctgcgacaacgtcaccttc 233
||||||||||||||| ||||||||
Sbjct: 9109086 gtgctctgcgacaacatcaccttc 9109109
Score = 40.1 bits (20), Expect = 6.3
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 248 caacctctcagggttcaatctcggcggcgagatctccccggccttcgg 295
|||||| || ||| |||| ||||| ||||||||||| |||||| ||||
Sbjct: 5261161 caacctatccgggctcaacctcggaggcgagatctctccggccgtcgg 5261114
>dbj|AP005652.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0015B15
Length = 123083
Score = 69.9 bits (35), Expect = 7e-09
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 191 ctactgctcctggcgcggcgtgctctgcgacaacgtcaccttc 233
||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 2817 ctactgctcgtggcgcggcgtcctctgcgacaacgtcaccttc 2775
Score = 63.9 bits (32), Expect = 4e-07
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 111 acgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtcc 170
|||||||||||||||||||| ||||||||| ||| ||||||| |||||||| ||| ||
Sbjct: 2885 acgctgctggagatcaagaagtccttccgcaatgtggacaacgtactgtacgattgggcc 2826
Query: 171 ggcg 174
||||
Sbjct: 2825 ggcg 2822
Score = 52.0 bits (26), Expect = 0.002
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 328 agtcgaatggactctccgggcagatccctgacgagattggtgattg 373
|||||||||| || || |||||||||||||| |||||||| |||||
Sbjct: 2494 agtcgaatgggctgtctgggcagatccctgatgagattggcgattg 2449
Score = 40.1 bits (20), Expect = 6.3
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 248 caacctctcagggttcaatctcggcggcgagatctccccggccttcgg 295
|||||| || ||| |||| ||||| ||||||||||| |||||| ||||
Sbjct: 2673 caacctatccgggctcaacctcggaggcgagatctctccggccgtcgg 2626
>dbj|AP004991.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0016O19
Length = 169120
Score = 69.9 bits (35), Expect = 7e-09
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 191 ctactgctcctggcgcggcgtgctctgcgacaacgtcaccttc 233
||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 128027 ctactgctcgtggcgcggcgtcctctgcgacaacgtcaccttc 127985
Score = 63.9 bits (32), Expect = 4e-07
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 111 acgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtcc 170
|||||||||||||||||||| ||||||||| ||| ||||||| |||||||| ||| ||
Sbjct: 128095 acgctgctggagatcaagaagtccttccgcaatgtggacaacgtactgtacgattgggcc 128036
Query: 171 ggcg 174
||||
Sbjct: 128035 ggcg 128032
Score = 52.0 bits (26), Expect = 0.002
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 328 agtcgaatggactctccgggcagatccctgacgagattggtgattg 373
|||||||||| || || |||||||||||||| |||||||| |||||
Sbjct: 127704 agtcgaatgggctgtctgggcagatccctgatgagattggcgattg 127659
Score = 40.1 bits (20), Expect = 6.3
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 248 caacctctcagggttcaatctcggcggcgagatctccccggccttcgg 295
|||||| || ||| |||| ||||| ||||||||||| |||||| ||||
Sbjct: 127883 caacctatccgggctcaacctcggaggcgagatctctccggccgtcgg 127836
>gb|AF466199.1 | Sorghum bicolor putative receptor protein kinase,
aminoalcoholphosphotransferase, putative
growth-regulating factor 1, putative GAG-POL precursor,
putative GAG-POL precursor, putative RIRE2 orf3, putative
anthocyanin regulatory C1, putative protein T30F21.6,
putative copia polyprotein, putative copia polyprotein,
putative protein NP_196765.1, and gb protein genes,
complete cds; and putative zinc finger protein gene,
partial cds
Length = 144159
Score = 61.9 bits (31), Expect = 2e-06
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 191 ctactgctcctggcgcggcgtgctctgcgacaacgtcac 229
||||||||||||||||||||| || ||||||||||||||
Sbjct: 7501 ctactgctcctggcgcggcgtcctgtgcgacaacgtcac 7463
Score = 60.0 bits (30), Expect = 7e-06
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 328 agtcgaatggactctccgggcagatccctgacgagattggtgattg 373
|||| ||||| || ||||||||||||||||| ||||||||||||||
Sbjct: 7181 agtcaaatgggctatccgggcagatccctgatgagattggtgattg 7136
Score = 54.0 bits (27), Expect = 4e-04
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 111 acgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtcc 170
|||||| ||||||||||||| ||||||||| | | || ||||| |||||||| ||| ||
Sbjct: 7569 acgctggtggagatcaagaagtccttccgcaacgtcggcaacgtactgtacgattgggcc 7510
Query: 171 ggcgacg 177
|||||||
Sbjct: 7509 ggcgacg 7503
Score = 46.1 bits (23), Expect = 0.10
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 419 gacatacccttttccatatcgaagctgaagcacct 453
|||||||| ||||| ||||| ||||||||||||||
Sbjct: 7008 gacataccattttctatatcaaagctgaagcacct 6974
>gb|AY530952.1 | Zea mays unknown (Z576C20.2), putative heme oxygenase 1 (Z576C20.3),
anthocyanin biosynthesis regulatory protein Pl1_B73
(Z576C20.4), putative growth-regulating factor 1
(Z576C20.6), and putative aminoalcoholphosphotransferase
(Z576C20.14) genes, complete cds; and putative receptor
protein kinase (Z576C20.21) gene, partial cds
Length = 155173
Score = 61.9 bits (31), Expect = 2e-06
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 191 ctactgctcctggcgcggcgtgctctgcgacaacgtcac 229
||||||||||||||||||||| || ||||||||||||||
Sbjct: 154398 ctactgctcctggcgcggcgtcctgtgcgacaacgtcac 154436
Score = 52.0 bits (26), Expect = 0.002
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 328 agtcgaatggactctccgggcagatccctgacgagattggtgattg 373
|||| ||||| || ||||||||||||||||| |||||||| |||||
Sbjct: 154735 agtcaaatggcctatccgggcagatccctgatgagattggcgattg 154780
Score = 52.0 bits (26), Expect = 0.002
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 112 cgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtccg 171
||||| ||||||||||||| ||||||||| | | || ||||| |||||||| ||| |||
Sbjct: 154331 cgctggtggagatcaagaagtccttccgcaacgtcggcaacgtactgtacgattgggccg 154390
Query: 172 gcgacg 177
||||||
Sbjct: 154391 gcgacg 154396
Score = 46.1 bits (23), Expect = 0.10
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 419 gacatacccttttccatatcgaagctgaagcacct 453
|||||||| ||||| ||||| ||||||||||||||
Sbjct: 154924 gacataccattttcaatatcaaagctgaagcacct 154958
>dbj|AB189642.1 | Halorhodospira halophila rnfA, nifA, nifB genes for RnfA, NifA, NifB,
complete and partial cds
Length = 3791
Score = 42.1 bits (21), Expect = 1.6
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 273 ggcgagatctccccggccttc 293
|||||||||||||||||||||
Sbjct: 2165 ggcgagatctccccggccttc 2185
>dbj|AP004503.1 | Lotus japonicus genomic DNA, chromosome 5, clone:LjT02M03, TM0034a,
complete sequence
Length = 83232
Score = 40.1 bits (20), Expect = 6.3
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 339 ctctccgggcagatccctgacgagattggtga 370
|||||||||||||| || || |||||||||||
Sbjct: 78868 ctctccgggcagataccagatgagattggtga 78837
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,604,780
Number of Sequences: 3902068
Number of extensions: 2604780
Number of successful extensions: 42682
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42441
Number of HSP's gapped (non-prelim): 239
length of query: 467
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 445
effective length of database: 17,147,199,772
effective search space: 7630503898540
effective search space used: 7630503898540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)