Clone Information

BLAST Search Result

Clone Name	bastl47h02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ATX7_HUMAN (O15265) Ataxin-7 (Spinocerebellar ataxia type 7 prot...	37	0.016
2	OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)	31	0.66
3	IF3A_ARATH (Q9LD55) Eukaryotic translation initiation factor 3 s...	31	0.66
4	YBX2B_XENLA (P45441) Y-box-binding protein 2-B (Cytoplasmic RNA-...	31	0.86
5	MTF1_HUMAN (Q14872) Metal-regulatory transcription factor 1 (Tra...	31	0.86
6	PS1C2_MOUSE (Q80ZC9) Psoriasis susceptibility 1 candidate gene 2...	31	0.86
7	DIA_DROME (P48608) Protein diaphanous	31	0.86
8	GLP_HORSE (P02726) Glycophorin HA	30	1.1
9	TRUB_HALSA (Q9HPA4) Probable tRNA pseudouridine synthase B (EC 5...	30	1.9
10	CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing pro...	30	1.9
11	CABL2_MOUSE (Q8K3M5) CDK5 and ABL1 enzyme substrate 2 (Interacto...	30	1.9
12	WASF4_HUMAN (Q8IV90) Wiskott-Aldrich syndrome protein family mem...	29	3.3
13	PRP1_HUMAN (P04280) Basic salivary proline-rich protein 1 precur...	28	4.3
14	DDX51_HUMAN (Q8N8A6) ATP-dependent RNA helicase DDX51 (EC 3.6.1....	28	4.3
15	CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing pro...	28	4.3
16	CABL2_HUMAN (Q9BTV7) CDK5 and ABL1 enzyme substrate 2 (Interacto...	28	4.3
17	SSB_SHEON (Q8EA81) Single-stranded DNA-binding protein (SSB) (He...	28	4.3
18	YLM2_CAEEL (P34376) Hypothetical protein D2007.2 in chromosome III	28	4.3
19	ENA_DROME (Q8T4F7) Protein enabled	28	4.3
20	RBLL_CHRVI (Q93UZ0) Ribulose bisphosphate carboxylase-like prote...	28	5.6
21	SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF	28	5.6
22	TSP2_BOVIN (Q95116) Thrombospondin-2 precursor (Corticotropin-in...	28	5.6
23	EGFL9_MOUSE (Q8K1E3) EGF-like domain-containing protein 9 precur...	28	5.6
24	WASL_HUMAN (O00401) Neural Wiskott-Aldrich syndrome protein (N-W...	28	5.6
25	WASL_RAT (O08816) Neural Wiskott-Aldrich syndrome protein (N-WASP)	28	5.6
26	WASL_MOUSE (Q91YD9) Neural Wiskott-Aldrich syndrome protein (N-W...	28	5.6
27	K1543_MOUSE (Q80VC9) Protein KIAA1543	28	5.6
28	ARHGB_HUMAN (O15085) Rho guanine nucleotide exchange factor 11 (...	28	5.6
29	YLK2_CAEEL (P41950) Hypothetical protein D1044.2 precursor	28	7.3
30	PRB2_HUMAN (P02812) Basic salivary proline-rich protein 2 (Saliv...	28	7.3
31	FXR2_HUMAN (P51116) Fragile X mental retardation syndrome-relate...	28	7.3
32	CNGB1_BOVIN (Q28181) 240 kDa protein of rod photoreceptor CNG-ch...	28	7.3
33	VGNB_CPSMV (P36312) Genome polyprotein B (RNA1 polyprotein) [Con...	28	7.3
34	TRUB_THET8 (Q5SLS6) tRNA pseudouridine synthase B (EC 5.4.99.-) ...	28	7.3
35	TRUB_THET2 (Q72GS9) tRNA pseudouridine synthase B (EC 5.4.99.-) ...	28	7.3
36	TCGAP_HUMAN (O14559) TC10/CDC42 GTPase-activating protein (Sorti...	28	7.3
37	FGF10_HUMAN (O15520) Fibroblast growth factor 10 precursor (FGF-...	27	9.5
38	VG47_ICHV1 (Q00139) 56 kDa serine protease (EC 3.4.21.-)	27	9.5
39	MTF1_MOUSE (Q07243) Metal-regulatory transcription factor 1 (Tra...	27	9.5
40	PDZK8_HUMAN (Q8NEN9) PDZ domain-containing protein 8 (Sarcoma an...	27	9.5
41	K1043_HUMAN (Q96AY4) TPR repeat-containing protein KIAA1043	27	9.5
42	BZR2_ARATH (Q9LN63) BRASSINAZOLE-RESISTANT 2 protein (BRI1-EMS-S...	27	9.5
43	WASP_HUMAN (P42768) Wiskott-Aldrich syndrome protein (WASp)	27	9.5
44	WASF2_HUMAN (Q9Y6W5) Wiskott-Aldrich syndrome protein family mem...	27	9.5
45	FOR3_SCHPO (O94532) Formin-3	27	9.5
46	EYA2_HUMAN (O00167) Eyes absent homolog 2 (EC 3.1.3.48)	27	9.5
47	SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1	27	9.5
48	DVL1_PANTR (Q5IS48) Segment polarity protein dishevelled homolog...	27	9.5
49	DVL1_HUMAN (O14640) Segment polarity protein dishevelled homolog...	27	9.5

>ATX7_HUMAN (O15265) Ataxin-7 (Spinocerebellar ataxia type 7 protein)|
          Length = 892

 Score = 36.6 bits (83), Expect = 0.016
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = -2

Query: 339 AAAAACLPQGEKRRWRERPNAQHMGISHPPPPASESRAGDGPPPAS 202
           AAAAA   Q ++++ ++ P  Q     HPPPP   +R  DG P A+
Sbjct: 23  AAAAAARQQQQQQQQQQPPPPQPQRQQHPPPPPRRTRPEDGGPGAA 68

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>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)|
          Length = 2716

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
 Frame = -2

Query: 315  QGEKRRWRERPNAQHMGISHPPPPASES---------RAGDGPPPA 205
            Q   +  ++ P  QH G+  PPPP  +            G GPPPA
Sbjct: 1272 QAAGQHQQQHPQHQHPGLPGPPPPQQQQGQQGQQPPPSVGGGPPPA 1317

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>IF3A_ARATH (Q9LD55) Eukaryotic translation initiation factor 3 subunit 10 (eIF-3|
            theta) (Eukaryotic translation initiation factor 3 large
            subunit) (eIF3a) (p114)
          Length = 987

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -2

Query: 342  AAAAAACLPQGEKRRWRERPNAQHMGISHPPPPASESRAGDGPPPASD*W 193
            AAAAAA  P        +R   +  G S P    ++ R+  GPPP  D W
Sbjct: 884  AAAAAAGAPAAPYVPKWKRQTTEVSGPSAPTSSETDRRSNRGPPPGDDHW 933

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>YBX2B_XENLA (P45441) Y-box-binding protein 2-B (Cytoplasmic RNA-binding protein|
           p54) (mRNP3)
          Length = 324

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 315 QGEKRRWRERPNAQHMGISHPPPPASESRAGDGPPPASD 199
           +GE +R R RP  Q      PP    ES+A     PAS+
Sbjct: 257 EGEPQRQRNRPYVQRRRAQQPPTVQGESKAEPSEHPASE 295

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>MTF1_HUMAN (Q14872) Metal-regulatory transcription factor 1 (Transcription|
           factor MTF-1) (MRE-binding transcription factor)
          Length = 753

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 294 RERPNAQHMGISHPPPPASESRAGDGP 214
           +ER +++  G S PPPP    +A DGP
Sbjct: 643 KERASSRRKGCSSPPPPEPSPQAPDGP 669

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>PS1C2_MOUSE (Q80ZC9) Psoriasis susceptibility 1 candidate gene 2 protein|
           homolog precursor (SPR1 protein)
          Length = 134

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 318 PQGEKRRWRERPNAQHMGISHPPPPASESRAGDGPPPASD*WPVG 184
           P G  R WR+ P++   G   P PP+++      PP   D WP G
Sbjct: 64  PPGSNRPWRDLPDS---GAWPPKPPSTDP---PKPPLPDDPWPAG 102

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>DIA_DROME (P48608) Protein diaphanous|
          Length = 1091

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -2

Query: 267 GISHPPPPASESRAGDGPPP 208
           G   PPPP    RAG GPPP
Sbjct: 522 GAPPPPPPPMPGRAGGGPPP 541

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>GLP_HORSE (P02726) Glycophorin HA|
          Length = 120

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -2

Query: 303 RRWRERPNAQHMGISHPPPPASESRAGDGPPPASD 199
           RR R+RP A        PPPAS   + D PPP S+
Sbjct: 74  RRLRKRPPAD------VPPPASTVPSADAPPPVSE 102

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>TRUB_HALSA (Q9HPA4) Probable tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 301

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +1

Query: 181 PADGPLIACRWRPVAGSRLACWGRRVRDP 267
           PADG L+AC     AG    C GR V DP
Sbjct: 261 PADGALVACY---TAGGTAVCLGRLVGDP 286

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>CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing protein C19orf7|
          Length = 1303

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/32 (50%), Positives = 16/32 (50%)
 Frame = -2

Query: 255 PPPPASESRAGDGPPPASD*WPVGGVTDARTA 160
           PPPP SES     PPP S   P     DAR A
Sbjct: 8   PPPPPSESPPPPSPPPPSTPSPPPCSPDARPA 39

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>CABL2_MOUSE (Q8K3M5) CDK5 and ABL1 enzyme substrate 2 (Interactor with CDK3 2)|
           (Ik3-2)
          Length = 481

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 255 PPPPASESRAGDGPPPASD*WPVGGV 178
           PPPP +E+R    PPPA    P GG+
Sbjct: 73  PPPPPTEAREAPAPPPA----PPGGL 94

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>WASF4_HUMAN (Q8IV90) Wiskott-Aldrich syndrome protein family member 4|
           (WASP-family protein member 4)
          Length = 625

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 285 PNAQHMGISHPPPPASESRAGDGPPPASD*WP 190
           P    +GI  PPPP      G  PPP+S  +P
Sbjct: 453 PPPPMIGIPPPPPPIGFGSPGTPPPPSSPSFP 484

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>PRP1_HUMAN (P04280) Basic salivary proline-rich protein 1 precursor (Salivary|
           proline-rich protein) [Contains: Basic peptide IB-6;
           Peptide P-H]
          Length = 392

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 318 PQGEKRRWRERPNAQHMGISHPPPPASESRAGDGPPP 208
           PQG+K R  + P  +  G   PPP       G  PPP
Sbjct: 265 PQGDKSRSPQSPPGKPQG---PPPQGGNQPQGPPPPP 298



 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -2

Query: 318 PQGEKRRWRERPNAQHMGISHPPPPASESRAGDGPPP 208
           PQG+K R    P  +  G   PPP       G  PPP
Sbjct: 82  PQGDKSRSPRSPPGKPQG---PPPQGGNQPQGPPPPP 115

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>DDX51_HUMAN (Q8N8A6) ATP-dependent RNA helicase DDX51 (EC 3.6.1.-) (DEAD box|
           protein 51)
          Length = 666

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 26/100 (26%), Positives = 40/100 (40%)
 Frame = -3

Query: 314 RERNAGGESAPMRSTWGSLTRLPQQASREPATGLHLQAINGPSAG*QTLAQPSQRYSCPA 135
           + R A GE A   S         ++A  EP+ G   +A   PSAG  +   P +R +  +
Sbjct: 90  KRRKADGEDAGAESN--------EEAPGEPSAGSSEEAPGEPSAG-SSEEAPGERSTSAS 140

Query: 134 AAYRYTSPHQGER*IEQQPSSIVTGFTYSGDGAERAMKAR 15
           A      P      +E+    +V G    G G  +A K +
Sbjct: 141 AEAAPDGPA-----LEEAAGPLVPGLVLGGFGKRKAPKVQ 175

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>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7|
           homolog
          Length = 1304

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 15/32 (46%), Positives = 15/32 (46%)
 Frame = -2

Query: 255 PPPPASESRAGDGPPPASD*WPVGGVTDARTA 160
           PPPP SES     PPP S   P     D R A
Sbjct: 8   PPPPPSESPPPPSPPPPSTPSPPPCSPDGRAA 39

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>CABL2_HUMAN (Q9BTV7) CDK5 and ABL1 enzyme substrate 2 (Interactor with CDK3 2)|
           (Ik3-2)
          Length = 478

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 288 RPNAQHMGISHPPPPASESRAGDGPPP 208
           RP +   G   PPPP +E+R    PPP
Sbjct: 60  RPPSLGPGGEKPPPPPAEAREPPAPPP 86

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>SSB_SHEON (Q8EA81) Single-stranded DNA-binding protein (SSB)|
           (Helix-destabilizing protein)
          Length = 238

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
 Frame = -3

Query: 317 LRERNAGGESAPM--RSTWGSLTRLPQQASREPATGLHLQAINGPSAG*QTLAQPSQRYS 144
           L  RN GG+ APM      G     PQQA+  PA   +  A     A      QP   Y+
Sbjct: 112 LGSRNQGGQGAPMGGMPQNGGYQSAPQQAA--PAQNQYAPAPQAAPAYQAPAPQPQSGYN 169

Query: 143 CPAAAYRY 120
            P A   Y
Sbjct: 170 QPPAQQSY 177

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>YLM2_CAEEL (P34376) Hypothetical protein D2007.2 in chromosome III|
          Length = 195

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 352 RDDGCCCCCLLASGRETQVARAPQCAAHGDLS 257
           R  GC CCC +A+G  T + R  + +  G LS
Sbjct: 63  RQPGCTCCCHIAAG-VTVIPRVARFSIEGGLS 93

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>ENA_DROME (Q8T4F7) Protein enabled|
          Length = 834

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = -2

Query: 339 AAAAACLPQGEKRRWRERPNAQHMGISHPPPPASESRAGDGPPPA 205
           AA     P    + +   P    MG   PP P +    G GPPPA
Sbjct: 568 AAGGGPPPPAPPQMFNGAPPPPAMGGGPPPAPPAPPAMGGGPPPA 612



 Score = 27.7 bits (60), Expect = 7.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 255 PPPPASESRAGDGPPP 208
           PPPP+    AG GPPP
Sbjct: 560 PPPPSFGGAAGGGPPP 575

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>RBLL_CHRVI (Q93UZ0) Ribulose bisphosphate carboxylase-like protein|
           (RuBisCO-like protein)
          Length = 457

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = -3

Query: 290 SAPMRSTWGSLTR---LPQQASREPATGLHLQAINGPSAG*QTLAQPSQRYSCPAAA 129
           +A +R  W ++     L ++A R P     + A   P+ G     QPS++ S P AA
Sbjct: 397 AASIRQAWEAIVAGETLEERAKRHPELSAAIAAFGKPAHGQAASPQPSEQASEPDAA 453

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>SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF|
          Length = 1097

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 306 KRRWRERPNAQHMGISHPPPPASESRAGDGPPPAS 202
           +++ +++P    M    PPPPA+ +R G GPP  S
Sbjct: 72  QQQQQQQPRPSPMARPGPPPPAAMARPG-GPPQVS 105

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>TSP2_BOVIN (Q95116) Thrombospondin-2 precursor (Corticotropin-induced secreted|
           protein) (CISP)
          Length = 1170

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 316 SGRETQVARAPQCAAHGDLSPASP 245
           SGRET+  + P C   G  SP SP
Sbjct: 477 SGRETKACQGPPCPVDGRWSPWSP 500

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>EGFL9_MOUSE (Q8K1E3) EGF-like domain-containing protein 9 precursor (Multiple|
           EGF-like domain protein 9) (Endothelial cell-specific
           protein S-1)
          Length = 382

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = -1

Query: 343 GCCC----CCLLASGRETQVARAPQCAAHGDLS 257
           GC C    C L   G  +Q ARA  C++H DL+
Sbjct: 4   GCRCLNLVCLLCILGATSQPARADDCSSHCDLA 36

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>WASL_HUMAN (O00401) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 505

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -2

Query: 255 PPPPASESRAGDGPPP 208
           PPPPA  S A  GPPP
Sbjct: 345 PPPPALPSSAPSGPPP 360

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>WASL_RAT (O08816) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 501

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -2

Query: 255 PPPPASESRAGDGPPP 208
           PPPPA  S A  GPPP
Sbjct: 342 PPPPALPSSAPSGPPP 357

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>WASL_MOUSE (Q91YD9) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 501

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -2

Query: 255 PPPPASESRAGDGPPP 208
           PPPPA  S A  GPPP
Sbjct: 342 PPPPALPSSAPSGPPP 357

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>K1543_MOUSE (Q80VC9) Protein KIAA1543|
          Length = 1252

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = -2

Query: 318 PQGEKRRWRERPNAQHMGISHPPPPASESRAGDG----PPPASD 199
           P+G  +   +R N   + ISHP  P+  S    G    PPP S+
Sbjct: 503 PEGASKPLSDRLNKAPIYISHPENPSKSSPCSTGEILKPPPPSE 546

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>ARHGB_HUMAN (O15085) Rho guanine nucleotide exchange factor 11 (PDZ-RhoGEF)|
          Length = 1522

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 10/49 (20%)
 Frame = -2

Query: 321  LPQGEKRRWRE------RPNAQHMGIS----HPPPPASESRAGDGPPPA 205
            L   +K  W E      R   +H G +    HPPPP     A  GP P+
Sbjct: 1062 LTSSDKNTWMELLEEAVRNATRHPGAAPMPVHPPPPGPREPAQQGPTPS 1110

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>YLK2_CAEEL (P41950) Hypothetical protein D1044.2 precursor|
          Length = 1090

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -1

Query: 343  GCCCCCLLASGRETQVARAPQCAAHGDLSPASPSKRVES 227
            G   CC   + RE+   RA   AA+G    A  SKR ES
Sbjct: 977  GAVVCCKRRNSRESSQLRAMYGAAYGVRPTAYESKRKES 1015

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>PRB2_HUMAN (P02812) Basic salivary proline-rich protein 2 (Salivary|
           proline-rich protein) (Con1 glycoprotein) [Contains:
           Basic peptide P-F] (Fragment)
          Length = 382

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -2

Query: 318 PQGEKRRWRERPNAQHMGISHPPPPASESRAGDGPPP 208
           PQG+K R    P  +  G   PPP       G  PPP
Sbjct: 69  PQGDKSRSPRSPPGKPQG---PPPQGGNQPQGPPPPP 102

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>FXR2_HUMAN (P51116) Fragile X mental retardation syndrome-related protein 2|
          Length = 673

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 16/36 (44%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
 Frame = -2

Query: 294 RERPNAQHMGISHPPPPASESR------AGDGPPPA 205
           RE PN    G   PP    ESR       G GPPPA
Sbjct: 460 REEPNRAGPGDRDPPTRGEESRRRPTGGRGRGPPPA 495

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>CNGB1_BOVIN (Q28181) 240 kDa protein of rod photoreceptor CNG-channel [Contains:|
            Glutamic acid-rich protein (GARP);
            Cyclic-nucleotide-gated cation channel 4 (CNG channel 4)
            (CNG-4) (Cyclic nucleotide-gated cation channel
            modulatory subunit)]
          Length = 1394

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -2

Query: 255  PPPPASESRAGDGPPPASD*WPVGGVTDARTAE 157
            P  PA E+ A   PPPAS   P G    AR  E
Sbjct: 1310 PEAPAPEAPAPSSPPPASQERPEGDKDAARPEE 1342

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>VGNB_CPSMV (P36312) Genome polyprotein B (RNA1 polyprotein) [Contains:|
           Protease cofactor (32 kDa protein); Putative helicase
           (EC 3.6.1.-) (NTP-binding protein) (NTB)
           (Membrane-binding protein) (58 kDa protein); Viral
           genome-linked protein (VPg); Picornai
          Length = 1858

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 3   SASGSCFHCSLGPVSRVSKTSNNGGWLLLDS 95
           SA+ SCF   +G  + VS  S +GG  +L+S
Sbjct: 292 SATSSCFQSPVGQATDVSAESQSGGVEMLES 322

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>TRUB_THET8 (Q5SLS6) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 312

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +3

Query: 213 EARRRLSTRLLGEAGERSPCA 275
           EARRRLSTR +G  G   P A
Sbjct: 20  EARRRLSTRRVGHTGTLDPLA 40

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>TRUB_THET2 (Q72GS9) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 312

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +3

Query: 213 EARRRLSTRLLGEAGERSPCA 275
           EARRRLSTR +G  G   P A
Sbjct: 20  EARRRLSTRRVGHTGTLDPLA 40

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>TCGAP_HUMAN (O14559) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)|
          Length = 1287

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -2

Query: 306 KRRWRERPNAQHMGISHPPPPASESRAGDGPPP 208
           K R  + P    M    PPPP S  R G  PPP
Sbjct: 859 KLRGAQGPLGPDMESPLPPPPLSLLRPGGAPPP 891

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>FGF10_HUMAN (O15520) Fibroblast growth factor 10 precursor (FGF-10)|
           (Keratinocyte growth factor 2)
          Length = 208

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 13/52 (25%)
 Frame = -1

Query: 343 GCCCCCLL-------------ASGRETQVARAPQCAAHGDLSPASPSKRVES 227
           GCCCCC L             A G++     A   ++    SP+S  + V S
Sbjct: 18  GCCCCCFLLLFLVSSVPVTCQALGQDMVSPEATNSSSSSFSSPSSAGRHVRS 69

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>VG47_ICHV1 (Q00139) 56 kDa serine protease (EC 3.4.21.-)|
          Length = 518

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +3

Query: 198 NRLQVEARRRLSTRLLGEAGERSPCAAHWGALATC 302
           +RL++EARR LST        R+P A  W  L TC
Sbjct: 405 SRLEIEARRELST-------SRAPVA--WSTLDTC 430

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>MTF1_MOUSE (Q07243) Metal-regulatory transcription factor 1 (Transcription|
           factor MTF-1) (MRE-binding transcription factor)
          Length = 675

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 294 RERPNAQHMGISHPPPPASESRAGDGP 214
           +ER   +  G S PPPP    +  DGP
Sbjct: 643 KERAAGRRKGCSSPPPPEPNPQPPDGP 669

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>PDZK8_HUMAN (Q8NEN9) PDZ domain-containing protein 8 (Sarcoma antigen|
           NY-SAR-84/NY-SAR-104)
          Length = 1154

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 261 SHPPPPASESRAGDGPPP 208
           SHP PP  +S+ G+ PPP
Sbjct: 549 SHPLPPKIQSKDGNKPPP 566

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>K1043_HUMAN (Q96AY4) TPR repeat-containing protein KIAA1043|
          Length = 1716

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 179  TPPTGH*SLAGGGPSPALDSLAGGGG*EIP 268
            +P +GH S AG  PSPAL   + G     P
Sbjct: 1542 SPSSGHQSPAGSAPSPALSYSSAGSARSSP 1571

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>BZR2_ARATH (Q9LN63) BRASSINAZOLE-RESISTANT 2 protein (BRI1-EMS-SUPPRESSOR 1|
           protein) (BIN2 SUBSTRATE 1 protein) (107 protein)
          Length = 335

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 348 TMAAAAAACLPQGEKRRWRERPN 280
           T AAAAAA +    K  WRER N
Sbjct: 9   TSAAAAAAAMATRRKPSWREREN 31

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>WASP_HUMAN (P42768) Wiskott-Aldrich syndrome protein (WASp)|
          Length = 501

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 339 AAAAACLPQGEKRRWRERPNAQHMGISHPPPPASESRAGDGPP 211
           A A   L Q + ++  +R +     +  PP PA+E R G  PP
Sbjct: 133 AQAFRALVQEKIQKRNQRQSGDRRQLPPPPTPANEERRGGLPP 175

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>WASF2_HUMAN (Q9Y6W5) Wiskott-Aldrich syndrome protein family member 2|
           (WASP-family protein member 2) (WAVE-2 protein)
           (Verprolin homology domain-containing protein 2)
          Length = 498

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 285 PNAQHMGISHPPPPASESRAGDGPPPASD*WP 190
           P    +GI  PPPP      G  PPP+   +P
Sbjct: 325 PPPPMIGIPPPPPPVGFGSPGTPPPPSPPSFP 356

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>FOR3_SCHPO (O94532) Formin-3|
          Length = 1461

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = -2

Query: 285 PNAQHMGISHPPPPASESRAGDGPPP 208
           P A  MG   PPPP     AG GPPP
Sbjct: 753 PPAPIMG-GPPPPPPPPGVAGAGPPP 777

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>EYA2_HUMAN (O00167) Eyes absent homolog 2 (EC 3.1.3.48)|
          Length = 538

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = -3

Query: 317 LRERNAGGESAPMRSTWGSLTRLPQQASREPATGLHLQAINGPSAG*QTLAQPSQRYSCP 138
           L +R    +SAP+R +       P+   R+P+T +        SAG Q  A P   Y  P
Sbjct: 32  LSDRQGITKSAPLRVSQLFSRSCPRVLPRQPSTAMAAYGQTQYSAGIQQ-ATPYTAYPPP 90

Query: 137 AAAY 126
           A AY
Sbjct: 91  AQAY 94

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>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 318 PQGEKRRWRERPNAQHMGISHPPPPASESRAGDGPPP 208
           P    R+ ++ P+ +    S  PPPA   R+   PPP
Sbjct: 524 PSPSPRKRQKEPSPRRRRRSPSPPPARRRRSPSPPPP 560

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>DVL1_PANTR (Q5IS48) Segment polarity protein dishevelled homolog DVL-1|
           (Dishevelled-1) (DSH homolog 1)
          Length = 670

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = -2

Query: 318 PQGEKRRWRERPNAQHMGISHPPPPASESRAGDGPP 211
           P G    WRERP  Q    S P   AS +  G  PP
Sbjct: 584 PSGVGSSWRERPAGQLSRGSSPRSQASATAPGLPPP 619

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>DVL1_HUMAN (O14640) Segment polarity protein dishevelled homolog DVL-1|
           (Dishevelled-1) (DSH homolog 1)
          Length = 670

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = -2

Query: 318 PQGEKRRWRERPNAQHMGISHPPPPASESRAGDGPP 211
           P G    WRERP  Q    S P   AS +  G  PP
Sbjct: 584 PSGVGSSWRERPAGQLSRGSSPRSQASATAPGLPPP 619


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,616,028
Number of Sequences: 219361
Number of extensions: 1161231
Number of successful extensions: 5410
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 4238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5263
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result