ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl47g08 |
|---|---|
| Clone Library Name | barley_pub |
>EZ2_MAIZE (Q8S4P5) Polycomb protein EZ2 (Enhancer of zeste protein 2)| Length = 894 Score = 52.8 bits (125), Expect = 2e-07 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%) Frame = +1 Query: 112 KRPDQGLGVGTSA--LMALHGKLTQMKRQIQQARLASIREKLEANRRALQNTPAACSMW 282 KR DQG+G +A ++ +H LTQ+ RQ+Q RLA I+EKLE NR+ LQ +CS++ Sbjct: 15 KRSDQGMGKDAAAASVVPIHANLTQLIRQVQSGRLAYIKEKLEVNRKTLQR--HSCSLF 71
>EZ3_MAIZE (Q8S4P4) Polycomb protein EZ3 (Enhancer of zeste protein 3)| Length = 895 Score = 51.6 bits (122), Expect = 5e-07 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%) Frame = +1 Query: 112 KRPDQGLG--VGTSALMALHGKLTQMKRQIQQARLASIREKLEANRRALQNTPAACSMW 282 KR DQG G ++++ +HG LTQ+ RQI+ RL I+EKLEANR+ LQ +CS++ Sbjct: 16 KRSDQGTGREAAPASVVPIHGNLTQLIRQIKSRRLLYIKEKLEANRKTLQR--HSCSLF 72
>EZA1_ARATH (Q9ZSM8) Probable Polycomb group protein EZA1 (CURLY LEAF-like 1)| (Protein SET DOMAIN GROUP 10) Length = 856 Score = 35.8 bits (81), Expect = 0.029 Identities = 16/32 (50%), Positives = 24/32 (75%) Frame = +1 Query: 151 LMALHGKLTQMKRQIQQARLASIREKLEANRR 246 L L +L+++KR+IQ R+ SI+EK EANR+ Sbjct: 29 LEGLENRLSELKRKIQGERVRSIKEKFEANRK 60
>Y384_VIBF1 (Q5E7W7) UPF0042 protein VF0384| Length = 284 Score = 29.3 bits (64), Expect = 2.7 Identities = 19/60 (31%), Positives = 28/60 (46%) Frame = +1 Query: 97 HRDGPKRPDQGLGVGTSALMALHGKLTQMKRQIQQARLASIREKLEANRRALQNTPAACS 276 H + RP GL + +A H ++ Q+K QIQQ L + LE N R+ C+ Sbjct: 192 HWEPSLRPMTGLDKPVADYLAKHTEVIQLKEQIQQF-LTTWLPALEKNNRSYLTVAIGCT 250
>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1419 Score = 28.5 bits (62), Expect = 4.6 Identities = 15/32 (46%), Positives = 16/32 (50%) Frame = +3 Query: 114 AAGSGARRGHLRAHGAPREADADEAPNPAGPT 209 AAG RG A GAP +P PAGPT Sbjct: 983 AAGVKGDRGETGALGAPGAPGPPGSPGPAGPT 1014
>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1418 Score = 28.5 bits (62), Expect = 4.6 Identities = 15/32 (46%), Positives = 16/32 (50%) Frame = +3 Query: 114 AAGSGARRGHLRAHGAPREADADEAPNPAGPT 209 AAG RG A GAP +P PAGPT Sbjct: 982 AAGVKGDRGETGAVGAPGAPGPPGSPGPAGPT 1013
>CINA_ECOLI (P77808) CinA-like protein| Length = 400 Score = 28.5 bits (62), Expect = 4.6 Identities = 16/37 (43%), Positives = 19/37 (51%) Frame = -3 Query: 276 RTGRRCVLQRPPVCLQLLPDGRESGLLDLALHLRQLP 166 R R L +PPVCL+L GR L +L QLP Sbjct: 168 RLRERFSLPQPPVCLRLTTFGRSESDLAQSLDTLQLP 204
>VGLY_LYCVA (P09991) Glycoprotein polyprotein [Contains: Glycoprotein G1;| Glycoprotein G2] Length = 498 Score = 28.5 bits (62), Expect = 4.6 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -3 Query: 246 PPVCLQLLPDGRESGLLDLALHLRQLPVERHERGGAHAEP 127 P + LL + L+ + LHL ++P RH +GG+ +P Sbjct: 433 PLALMDLLMFSTSAYLVSIFLHLVKIPTHRHIKGGSCPKP 472
>CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1459 Score = 28.5 bits (62), Expect = 4.6 Identities = 15/32 (46%), Positives = 16/32 (50%) Frame = +3 Query: 114 AAGSGARRGHLRAHGAPREADADEAPNPAGPT 209 AAG RG A GAP +P PAGPT Sbjct: 1023 AAGVKGDRGETGALGAPGAPGPPGSPGPAGPT 1054
>SPB4_SCHPO (O74764) ATP-dependent rRNA helicase spb4 (EC 3.6.1.-)| Length = 606 Score = 28.1 bits (61), Expect = 6.0 Identities = 17/41 (41%), Positives = 23/41 (56%) Frame = -3 Query: 279 HRTGRRCVLQRPPVCLQLLPDGRESGLLDLALHLRQLPVER 157 HR GR R V + LL DGRE +L L +R++P+ R Sbjct: 345 HRCGRAGRAGRAGVAIVLLNDGREEEYEEL-LRVRKVPITR 384
>SPB4_NEUCR (Q873H9) ATP-dependent rRNA helicase spb-4 (EC 3.6.1.-)| Length = 654 Score = 28.1 bits (61), Expect = 6.0 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = -3 Query: 279 HRTGRRCVLQRPPVCLQLLPDGRESGLLDLALHLRQLPVERHERGGAHAEP 127 HR GR R + + LL GRE G + L L +RQ P+ E+ P Sbjct: 388 HRCGRAGRAGRRGLAVVLLQPGREEGYVQL-LEVRQTPITPLEKPAISVTP 437
>LAMB1_DROME (P11046) Laminin beta-1 chain precursor (Laminin B1 chain)| Length = 1790 Score = 28.1 bits (61), Expect = 6.0 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -3 Query: 285 RPHRTGRRCVLQRPPVCLQLLPDGRESGLLD 193 RPH TGR C + + LLP+ E+ ++D Sbjct: 553 RPHMTGRSCSQPKQNYFIPLLPEVHEAEVVD 583
>NUCB1_HUMAN (Q02818) Nucleobindin-1 precursor (CALNUC)| Length = 461 Score = 27.7 bits (60), Expect = 7.8 Identities = 17/49 (34%), Positives = 24/49 (48%) Frame = +1 Query: 124 QGLGVGTSALMALHGKLTQMKRQIQQARLASIREKLEANRRALQNTPAA 270 Q L T AL G+L KR++QQA L + K + ++ PAA Sbjct: 366 QRLSQETEALGRSQGRLEAQKRELQQAVLHMEQRKQQQQQQQGHKAPAA 414
>IRAK1_HUMAN (P51617) Interleukin-1 receptor-associated kinase 1 (EC 2.7.11.1)| (IRAK-1) Length = 712 Score = 27.7 bits (60), Expect = 7.8 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = +1 Query: 100 RDGPKRPDQGLGVGTSALMALHGKLTQMKRQIQQARLASIREKLEA 237 R GP P+ GLG+G A LH + KR+ ++ EKL+A Sbjct: 481 RPGPCPPELGLGLGQLACCCLH---RRAKRRPPMTQVYERLEKLQA 523 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,188,804 Number of Sequences: 219361 Number of extensions: 416216 Number of successful extensions: 1617 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1493 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1617 length of database: 80,573,946 effective HSP length: 71 effective length of database: 64,999,315 effective search space used: 1559983560 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
