>U202A_ARATH (Q9XIK4) Hypothetical UPF0202 protein At1g10490|
          Length = 1058

 Score =  238 bits (606), Expect = 7e-63
 Identities = 111/143 (77%), Positives = 132/143 (92%)
 Frame = +1

Query: 28  MRKKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYVLAKSRVKSRPSVLWCYRN 207
           MRKKVDERIRTLIENGV+ R RSMF+I+GDK+RDQIVNL+++L+KS VKS PSVLWCY+N
Sbjct: 1   MRKKVDERIRTLIENGVKLRHRSMFVIIGDKARDQIVNLHHILSKSVVKSNPSVLWCYKN 60

Query: 208 KLEISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNTFGMC 387
           +L+ISSH KKRAKQ+KK+ +RG +DPEK D FSLFL+  D+T+C+YKDSER+LGNTFG+C
Sbjct: 61  RLDISSHNKKRAKQLKKMKERGQLDPEKLDAFSLFLDVVDVTHCLYKDSERILGNTFGIC 120

Query: 388 ILQDFEALTPNLLARTIETVEGG 456
           ILQDFEALTPNLLARTIETVEGG
Sbjct: 121 ILQDFEALTPNLLARTIETVEGG 143

>U202B_ARATH (Q9M2Q4) Hypothetical UPF0202 protein At3g57940|
          Length = 1024

 Score =  226 bits (576), Expect = 2e-59
 Identities = 105/143 (73%), Positives = 129/143 (90%)
 Frame = +1

Query: 28  MRKKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYVLAKSRVKSRPSVLWCYRN 207
           MRKKVDERIRTLIENGV+ R RSMF+I+GDKSRDQIVNL+++L+K+ +K  PSVLWCY++
Sbjct: 1   MRKKVDERIRTLIENGVKLRHRSMFVIIGDKSRDQIVNLHHMLSKAVIKCNPSVLWCYKD 60

Query: 208 KLEISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNTFGMC 387
           KL+ISSH++KR+KQ+K+L +RG +DPEK D FS  L+   +T+C+YKDSER+LGNTFGMC
Sbjct: 61  KLDISSHKQKRSKQLKRLRERGQLDPEKLDAFSRLLDVGRVTHCLYKDSERILGNTFGMC 120

Query: 388 ILQDFEALTPNLLARTIETVEGG 456
           ILQDFEALTPNLLARTIETVEGG
Sbjct: 121 ILQDFEALTPNLLARTIETVEGG 143

>ALP_HUMAN (Q9H0A0) N-acetyltransferase-like protein (EC 2.3.1.-)|
          Length = 1025

 Score =  196 bits (498), Expect = 2e-50
 Identities = 87/142 (61%), Positives = 120/142 (84%)
 Frame = +1

Query: 31  RKKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYVLAKSRVKSRPSVLWCYRNK 210
           RKKVD RIR LIENGV +RQRS+F++VGD+ +DQ+V L+++L+K+ VK+RPSVLWCY+ +
Sbjct: 3   RKKVDNRIRILIENGVAERQRSLFVVVGDRGKDQVVILHHMLSKATVKARPSVLWCYKKE 62

Query: 211 LEISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNTFGMCI 390
           L  SSHRKKR +Q++K ++ G ++ ++ DPF LF+  ++I YC Y ++ ++LGNTFGMC+
Sbjct: 63  LGFSSHRKKRMRQLQKKIKNGTLNIKQDDPFELFIAATNIRYCYYNETHKILGNTFGMCV 122

Query: 391 LQDFEALTPNLLARTIETVEGG 456
           LQDFEALTPNLLART+ETVEGG
Sbjct: 123 LQDFEALTPNLLARTVETVEGG 144

>YDK9_SCHPO (P87115) Hypothetical UPF0202 protein C20G8.09c in chromosome I|
          Length = 1033

 Score =  182 bits (462), Expect = 3e-46
 Identities = 84/143 (58%), Positives = 116/143 (81%), Gaps = 1/143 (0%)
 Frame = +1

Query: 31  RKKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYVLAKSRVKSRPSVLWCYRNK 210
           +K +D RI TLI+NG +++QRS F++VGD++RDQ+VNL+++L++S+V +RP+VLW Y+  
Sbjct: 3   KKALDSRIPTLIKNGCQEKQRSFFVVVGDRARDQVVNLHWLLSQSKVAARPNVLWMYKKD 62

Query: 211 L-EISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNTFGMC 387
           L   +SHRKKR  +IKK ++RG+ DP   DPF LF   ++I YC YK+SE++LG T+GM 
Sbjct: 63  LLGFTSHRKKRENKIKKEIKRGIRDPNSEDPFELFCSITNIRYCYYKESEKILGQTYGML 122

Query: 388 ILQDFEALTPNLLARTIETVEGG 456
           +LQDFEALTPNLLARTIETVEGG
Sbjct: 123 VLQDFEALTPNLLARTIETVEGG 145

>YIL8_CAEEL (O01757) Hypothetical UPF0202 protein F55A12.8 in chromosome I|
          Length = 1043

 Score =  172 bits (437), Expect = 3e-43
 Identities = 81/143 (56%), Positives = 108/143 (75%)
 Frame = +1

Query: 28  MRKKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYVLAKSRVKSRPSVLWCYRN 207
           MR K+D RIRT IENGV    RSMF +VGDK+RDQ+  L ++L+KS V +RP+VLWCY+ 
Sbjct: 1   MRTKLDGRIRTQIENGVASGHRSMFAVVGDKARDQVPILYHILSKSTVSARPNVLWCYKK 60

Query: 208 KLEISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNTFGMC 387
           +L  S+HR K+AK++KK           ADPF +F+ ++ I YC Y ++E++LGNTFG+ 
Sbjct: 61  ELSFSTHRAKKAKKMKKATTTISGSLPDADPFDVFISSTQIRYCYYNETEKILGNTFGVL 120

Query: 388 ILQDFEALTPNLLARTIETVEGG 456
           +LQDFEA+TPNLLARTIET+EGG
Sbjct: 121 VLQDFEAMTPNLLARTIETIEGG 143

>YNN2_YEAST (P53914) Hypothetical UPF0202 protein YNL132w|
          Length = 1056

 Score =  170 bits (431), Expect = 1e-42
 Identities = 81/143 (56%), Positives = 110/143 (76%), Gaps = 1/143 (0%)
 Frame = +1

Query: 31  RKKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYVLAKSRVKSRPSVLWCYRNK 210
           +K +D RI +LI NGV+ +QRS+F+IVGD++R+Q+ NL+Y++  + +K   SVLW Y+ K
Sbjct: 3   KKAIDSRIPSLIRNGVQTKQRSIFVIVGDRARNQLPNLHYLMMSADLKMNKSVLWAYKKK 62

Query: 211 L-EISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNTFGMC 387
           L   +SHRKKR  +IKK ++RG  +  + DPF  F+   +I Y  YK+SE++LGNT+GMC
Sbjct: 63  LLGFTSHRKKRENKIKKEIKRGTREVNEMDPFESFISNQNIRYVYYKESEKILGNTYGMC 122

Query: 388 ILQDFEALTPNLLARTIETVEGG 456
           ILQDFEALTPNLLARTIETVEGG
Sbjct: 123 ILQDFEALTPNLLARTIETVEGG 145

>U202_DROME (Q9W3C1) Polycomb protein l(1)G0020 (p110 protein)|
          Length = 1008

 Score =  157 bits (396), Expect = 2e-38
 Identities = 81/144 (56%), Positives = 106/144 (73%), Gaps = 1/144 (0%)
 Frame = +1

Query: 28  MRKKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYVLAKSRVKSRPSVLWCYRN 207
           ++KK+D RIR +IENGV+   R+MFI++GDK+RDQ+  L  +L KS VK+RP+VLWCY+N
Sbjct: 2   VKKKIDNRIRVMIENGVKLGHRTMFIVIGDKARDQVPILYDILTKSTVKARPTVLWCYKN 61

Query: 208 KLE-ISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNTFGM 384
           K E IS+H KKRAK+I      G +D  +AD F  F   + I    Y ++  VLG T+G+
Sbjct: 62  KDEAISNHGKKRAKKIAV----GKVDVNEADLFDSFRVATTIHGRYYSETHAVLGRTYGV 117

Query: 385 CILQDFEALTPNLLARTIETVEGG 456
           C+LQDFEALTPNLLART+ETVEGG
Sbjct: 118 CVLQDFEALTPNLLARTVETVEGG 141

>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)|
          Length = 1206

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 129  PDRQPQLRAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQE 257
            P   P L+    P  +A  + L++PQQ + QQ QEE +Q  Q+
Sbjct: 902  PQAIPTLQLQSAPSTIADPQQLMVPQQQQQQQHQEEQQQQPQQ 944

>GPA12_CAEEL (Q19572) Guanine nucleotide-binding protein alpha-12 subunit|
          Length = 355

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
 Frame = +1

Query: 28  MRKKVDERIRTLIENGVRQRQRSMFII--VGDKSRDQIVNLNYVLAKSRVKSRPSVLWCY 201
           MR++++  +    E+G     + M II   G+ + D++      + ++ + S   VL   
Sbjct: 26  MRRQINLLLLGSGESGKSTFVKQMHIIHGAGEFTADEVRAYRQQIYQNAI-SAMRVLLDA 84

Query: 202 RNKLEISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDS 354
           RNKL I+    KR  +++K+M+  + D  K   F+ F+E + I    + D+
Sbjct: 85  RNKLGIAWEDPKRQVEVEKVMRFSVGDLLKGIDFTTFVEVAPIISDFWNDA 135

>CN102_HUMAN (Q9H7Z3) Protein C14orf102|
          Length = 1164

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = +1

Query: 142 LNYVLAKSRVKSRPSVLWCYRNKLEISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLET 321
           L Y +AK        V+WC   K +     K + K  KKL +  L +PE  + F L+ + 
Sbjct: 737 LQYEIAK--------VIWCLHTKNK--KRLKSQGKNCKKLAKNLLKEPENCNNFCLWKQY 786

Query: 322 SDITYCM--YKDSERVLGNTFGM 384
           + + + +   +D+ +V     GM
Sbjct: 787 AHLEWLLGNTEDARKVFDTALGM 809

>CN102_MOUSE (Q80XC6) Protein C14orf102 homolog|
          Length = 1172

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 26/86 (30%), Positives = 37/86 (43%)
 Frame = +1

Query: 118 KSRDQIVNLNYVLAKSRVKSRPSVLWCYRNKLEISSHRKKRAKQIKKLMQRGLMDPEKAD 297
           KS+  +  L Y +AK        V+WC   K       K + K  KKL +  L +PE  +
Sbjct: 738 KSQLSLSWLRYEIAK--------VIWCLHTK---KKRLKSQGKSCKKLAKNLLKEPENRN 786

Query: 298 PFSLFLETSDITYCMYKDSERVLGNT 375
            F L+ +        Y   E +LGNT
Sbjct: 787 NFCLWKQ--------YAHLEWLLGNT 804

>GPA12_CAEBR (Q613V4) Guanine nucleotide-binding protein alpha-12 subunit|
          Length = 355

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
 Frame = +1

Query: 28  MRKKVDERIRTLIENGVRQRQRSMFII--VGDKSRDQIVNLNYVLAKSRVKSRPSVLWCY 201
           MR++++  +    E+G     + M II   G+ + D++      + ++ + S   VL   
Sbjct: 26  MRRQINLLLLGSGESGKSTFVKQMHIIHGAGEFTADEVRAYRQQIYQNAI-SAMRVLLDA 84

Query: 202 RNKLEISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDS 354
           RNKL I+    KR  +++K+M+  + D  K   F+ F+E + I    + D+
Sbjct: 85  RNKLGIAWEDPKRQVEVEKVMRFTVGDLLKGIDFTTFVEVAPIISDFWNDA 135

>DPOG1_MOUSE (P54099) DNA polymerase gamma subunit 1 (EC 2.7.7.7) (Mitochondrial|
           DNA polymerase catalytic subunit) (PolG-alpha)
          Length = 1239

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 24/94 (25%), Positives = 42/94 (44%)
 Frame = +1

Query: 46  ERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYVLAKSRVKSRPSVLWCYRNKLEISS 225
           ER  T  +N   + QR M   + D + D       +L+  R K  P   W +  + ++  
Sbjct: 425 ERYLTEAQNTYEELQREMKKSLMDLANDAC----QLLSGERYKEDP---WLWDLEWDLQE 477

Query: 226 HRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSD 327
            ++K+AK++KK      +  E A PF   ++  D
Sbjct: 478 FKQKKAKKVKKPASASKLPIEGAGPFGDPMDQED 511

>LMBL3_MOUSE (Q8BLB7) Lethal(3)malignant brain tumor-like 3 protein|
           (L(3)mbt-like 3 protein)
          Length = 883

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 141 PQLRAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQEAHAARA 275
           P ++  Q P+QV  ++    PQQA+     ++A+QA Q   A +A
Sbjct: 664 PSVQQSQPPQQVQQVQHAQPPQQAQKAPQAQQAQQAQQAQQAPQA 708

>AGO2_DROME (Q9VUQ5) Argonaute 2 protein|
          Length = 1214

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 135 RQPQLRAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQE 257
           RQ Q +  Q P+Q+   + L  PQQ + QQP ++ +Q+ ++
Sbjct: 30  RQQQPQQLQQPQQLQQPQQLQQPQQQQQQQPHQQQQQSSRQ 70

>OCTB1_DROME (Q9VCZ3) Octopamine receptor beta-1 (DmOct-beta-1R) (DmOA2)|
          Length = 508

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -2

Query: 338 Q*VMSEVSRKREKGSAFSGSMSPRCMSFLICLARFFLWLLISSL 207
           Q  +S + R+R+        MS    +FLIC   FFLW ++SSL
Sbjct: 336 QSTISTMRRERKAARTLGIIMS----AFLICWLPFFLWYIVSSL 375

>NAB2_YEAST (P32505) Nuclear polyadenylated RNA-binding protein NAB2|
          Length = 525

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 129 PDRQPQLRAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQ 254
           P +QPQ +  Q P+Q         PQQ   QQPQ++ +Q  Q
Sbjct: 124 PQQQPQQQPQQQPQQQ--------PQQQPQQQPQQQPQQQPQ 157

>UVRB_FUSNN (Q8RGR2) UvrABC system protein B (Protein uvrB) (Excinuclease ABC|
           subunit B)
          Length = 663

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 17/56 (30%), Positives = 33/56 (58%)
 Frame = +1

Query: 127 DQIVNLNYVLAKSRVKSRPSVLWCYRNKLEISSHRKKRAKQIKKLMQRGLMDPEKA 294
           + ++NL+Y + + + ++   V   +RNK +I     K  K+IKKL++   +D E+A
Sbjct: 596 EDLINLDYGIEEKKFENDKKV---FRNKTDIEKEITKLEKKIKKLVEE--LDFEQA 646

>HRS_DROME (Q960X8) Hepatocyte growth factor-regulated tyrosine kinase|
           substrate
          Length = 760

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +3

Query: 129 PDRQPQLRAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQ 254
           P +QPQ   GQ P+Q+   +    PQQ   QQPQ+   Q  Q
Sbjct: 658 PGQQPQQIPGQQPQQIPGQQ----PQQIPGQQPQQIPVQQPQ 695

>RS6E_NANEQ (Q74MJ5) 30S ribosomal protein S6e|
          Length = 126

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +1

Query: 28  MRKKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYVLAK 162
           MRK+V+  +R  I   V +R R    + G+   D+IV +N V+ K
Sbjct: 64  MRKEVEGAVRKKIWWWVDKRMRVKKTVYGNTISDEIVQVNTVIVK 108

>SYK2_ECOLI (P0A8N5) Lysyl-tRNA synthetase, heat inducible (EC 6.1.1.6)|
           (Lysine--tRNA ligase) (LysRS)
          Length = 504

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 13  RAAARMRKKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYVLAKSR 168
           R   +  + + ++   L +  VR RQR + +I  DKSR   V  + +LA  R
Sbjct: 143 RLLTKALRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIR 194

>SYK2_ECOL6 (Q8FAT5) Lysyl-tRNA synthetase, heat inducible (EC 6.1.1.6)|
           (Lysine--tRNA ligase) (LysRS)
          Length = 504

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 13  RAAARMRKKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYVLAKSR 168
           R   +  + + ++   L +  VR RQR + +I  DKSR   V  + +LA  R
Sbjct: 143 RLLTKALRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIR 194

>SYK2_ECO57 (P0A8N6) Lysyl-tRNA synthetase, heat inducible (EC 6.1.1.6)|
           (Lysine--tRNA ligase) (LysRS)
          Length = 504

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 13  RAAARMRKKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYVLAKSR 168
           R   +  + + ++   L +  VR RQR + +I  DKSR   V  + +LA  R
Sbjct: 143 RLLTKALRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIR 194

>DPOG1_RAT (Q9QYV8) DNA polymerase gamma subunit 1 (EC 2.7.7.7) (Mitochondrial|
           DNA polymerase catalytic subunit) (PolG-alpha)
          Length = 1216

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
 Frame = +1

Query: 46  ERIRTLIENGVRQRQRSMFIIVGDKSRDQIVN-LNYVLAKSRVKSRPSVLWCYRNKLEIS 222
           ER  T  ++   + QR M      KS  ++ N    +L+  R K  P   W +  + ++ 
Sbjct: 424 ERYLTEAQSTYEELQREM-----KKSLMELANDACQLLSGERYKEDP---WLWDLEWDLQ 475

Query: 223 SHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSD 327
             ++K+AK++KK      +  E A PF   ++  D
Sbjct: 476 EFKQKKAKKVKKTASASKLPIEGAGPFGDPMDQED 510


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,680,116
Number of Sequences: 219361
Number of extensions: 660113
Number of successful extensions: 3122
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 2991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3104
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)