ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl47g02 |
|---|---|
| Clone Library Name | barley_pub |
>RENT2_HUMAN (Q9HAU5) Regulator of nonsense transcripts 2 (Nonsense mRNA| reducing factor 2) (Up-frameshift suppressor 2 homolog) (hUpf2) Length = 1272 Score = 82.4 bits (202), Expect = 5e-16 Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 8/136 (5%) Frame = +3 Query: 54 FKKALSSYYDAAVAVLQSEHASLRALESENAKILNAKGELSDENTALYEKLRKSFDQLLR 233 F+ L Y+ + L+ +H L+ E +N +IL++KGELS++ YE+ S+ +LL Sbjct: 352 FQNLLKEYFTSLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLA 411 Query: 234 CVSSLAEALDMQPPVMPDDGHTTRVTTVAELSPSGKDFSAVEP--------IWDDEDTKA 389 SLA+ LD P +P D T E P F+ +P IW+DED + Sbjct: 412 NSQSLADLLDENMPDLPQDKPTPE-----EHGPGIDIFTPGKPGEYDLEGGIWEDEDARN 466 Query: 390 FYESLPDLRVFVPGVL 437 FYE+L DL+ FVP +L Sbjct: 467 FYENLIDLKAFVPAIL 482
>NMD2_YEAST (P38798) Nonsense-mediated mRNA decay protein 2 (Up-frameshift| suppressor 2) Length = 1089 Score = 48.1 bits (113), Expect = 9e-06 Identities = 31/124 (25%), Positives = 55/124 (44%) Frame = +3 Query: 42 LKTFFKKALSSYYDAAVAVLQSEHASLRALESENAKILNAKGELSDENTALYEKLRKSFD 221 LK + ++ DA A H + L+ E+ K G+L DE Y+KL F Sbjct: 231 LKGALQSLFKNFIDATFARATELHKKVNKLQREHQKCQIRTGKLRDEYVEEYDKLLPIFI 290 Query: 222 QLLRCVSSLAEALDMQPPVMPDDGHTTRVTTVAELSPSGKDFSAVEPIWDDEDTKAFYES 401 + +L E ++ P + + T + + + + + +W++EDT+ FYE Sbjct: 291 RFKTSAITLGEFFKLEIPELEGASNDDLKETASPMI-TNQILPPNQRLWENEDTRKFYEI 349 Query: 402 LPDL 413 LPD+ Sbjct: 350 LPDI 353
>GNAL_RAT (P38406) Guanine nucleotide-binding protein G(olf), alpha subunit| (Adenylate cyclase-stimulating G alpha protein, olfactory type) Length = 381 Score = 33.5 bits (75), Expect = 0.24 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 5/89 (5%) Frame = +3 Query: 147 KILNAKGELSDENTALYEKLRKSF-DQLLRCVSSLAEALDMQPPVMPDD----GHTTRVT 311 +IL+ G +E +RK+ D ++ VS+++ + P P++ + + Sbjct: 63 RILHVNGSNPEEKKQKILDIRKNVKDAIVTIVSAMSTIIPPVPLANPENQFRSDYIKSIA 122 Query: 312 TVAELSPSGKDFSAVEPIWDDEDTKAFYE 398 + + S + F V+ +WDDE KA +E Sbjct: 123 PITDFEYSQEFFDHVKKLWDDEGVKACFE 151
>MYSP_SCHJA (Q05870) Paramyosin (Antigen Sj97)| Length = 866 Score = 32.7 bits (73), Expect = 0.41 Identities = 17/43 (39%), Positives = 27/43 (62%) Frame = +3 Query: 129 LESENAKILNAKGELSDENTALYEKLRKSFDQLLRCVSSLAEA 257 LESEN ++ + +L+D+N AL + R+ DQ+ SSL +A Sbjct: 393 LESENMRLKSLVNDLTDKNNALERENRQMNDQVKELKSSLRDA 435
>GNAL_MOUSE (Q8CGK7) Guanine nucleotide-binding protein G(olf), alpha subunit| (Adenylate cyclase-stimulating G alpha protein, olfactory type) Length = 381 Score = 32.3 bits (72), Expect = 0.53 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 5/89 (5%) Frame = +3 Query: 147 KILNAKGELSDENTALYEKLRKSF-DQLLRCVSSLAEALDMQPPVMPDD----GHTTRVT 311 +IL+ G +E +RK+ D ++ VS+++ + P P++ + + Sbjct: 63 RILHVNGFNPEEKKQKILDIRKNVKDAIVTIVSAMSTIIPPVPLANPENQFRSDYIKSIA 122 Query: 312 TVAELSPSGKDFSAVEPIWDDEDTKAFYE 398 + + S + F V+ +WDDE KA +E Sbjct: 123 PITDFEYSQEFFDHVKKLWDDEGVKACFE 151
>GNAL_HUMAN (P38405) Guanine nucleotide-binding protein G(olf), alpha subunit| (Adenylate cyclase-stimulating G alpha protein, olfactory type) Length = 381 Score = 32.3 bits (72), Expect = 0.53 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 5/89 (5%) Frame = +3 Query: 147 KILNAKGELSDENTALYEKLRKSF-DQLLRCVSSLAEALDMQPPVMPDD----GHTTRVT 311 +IL+ G +E +RK+ D ++ VS+++ + P P++ + + Sbjct: 63 RILHVNGFNPEEKKQKILDIRKNVKDAIVTIVSAMSTIIPPVPLANPENQFRSDYIKSIA 122 Query: 312 TVAELSPSGKDFSAVEPIWDDEDTKAFYE 398 + + S + F V+ +WDDE KA +E Sbjct: 123 PITDFEYSQEFFDHVKKLWDDEGVKACFE 151
>CSE1_DROME (Q9XZU1) Importin-alpha re-exporter (Cellular apoptosis| susceptibility protein homolog) Length = 975 Score = 32.3 bits (72), Expect = 0.53 Identities = 20/66 (30%), Positives = 34/66 (51%) Frame = +3 Query: 6 DEFFMGLNVTDDLKTFFKKALSSYYDAAVAVLQSEHASLRALESENAKILNAKGELSDEN 185 ++ F LN + DL FF+ ++++ A + L ++ SLR + E+A +L EN Sbjct: 219 NKVFFSLN-SQDLPEFFEDNINTWMGAFIQQLAADVPSLRTADDEDAGVLEHLRAQVCEN 277 Query: 186 TALYEK 203 LY K Sbjct: 278 ICLYAK 283
>KPRS_THEAC (Q9HLV6) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)| (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) Length = 286 Score = 32.0 bits (71), Expect = 0.70 Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 10/135 (7%) Frame = +3 Query: 9 EFFMGLNVTDDLKTFFKKALSSYYDAAVAVLQSEHASLRALESENAKILN---------- 158 E + L+ D + ++ YY A +H R E +++I Sbjct: 64 EMILSLSAVRDYQVKSVNIIAPYYGYA-----RQHQRYRRGEPISSQIFTEIFASYSTSI 118 Query: 159 AKGELSDENTALYEKLRKSFDQLLRCVSSLAEALDMQPPVMPDDGHTTRVTTVAELSPSG 338 A ++ DE T Y K+R + R + +D+ V PDDG RV VAE G Sbjct: 119 ATVDIHDEQTLSYSKVRFTDLHADRSIIDFYRHVDIDYVVSPDDGGLQRVKHVAE--ALG 176 Query: 339 KDFSAVEPIWDDEDT 383 K + +E D+ T Sbjct: 177 KKYFYIEKKRIDDRT 191
>NMD2_SCHPO (O13824) Nonsense-mediated mRNA decay protein 2 (Up-frameshift| suppressor 2) Length = 1049 Score = 31.6 bits (70), Expect = 0.91 Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 9/131 (6%) Frame = +3 Query: 45 KTFFKKALSSYYDAAVAVLQSEHASLRALESENAKILNAKGELSDENTALYEKLRKSFDQ 224 +T+ +K+L+SY D Q + L + + + + ++E KS + Sbjct: 267 RTYLRKSLNSYVDKLEVYCQKRKSLFEELNKQYQEQSIIRADPNNEKFQRLANFSKSIES 326 Query: 225 LLRCVSSLAEALDMQPPV---------MPDDGHTTRVTTVAELSPSGKDFSAVEPIWDDE 377 +SL+E L+ + G + E S S +A +WDD Sbjct: 327 EFSSYASLSEVLNRKASEDLLELNFMEKASSGTNSVFNASGERSESANVETA--QVWDDR 384 Query: 378 DTKAFYESLPD 410 + FYE P+ Sbjct: 385 EQYFFYEVFPN 395
>DNJC3_CHICK (Q5ZI13) DnaJ homolog subfamily C member 3| Length = 503 Score = 31.2 bits (69), Expect = 1.2 Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 27/160 (16%) Frame = +3 Query: 24 LNVTDDLKTFFKKALSSY----YDAAVAVLQ---------SEHASLRA----LESENAKI 152 L +D+L+ + +ALS+Y Y+AA+ +L +E LRA E E +K Sbjct: 147 LTKSDELQRLYSQALSAYRQEDYEAAIPLLDEILAVCVWDAELRELRAECYIKEGEPSKA 206 Query: 153 ---LNAKGELSDENTALYEKLRKSFDQLLRCVSSLAEALDMQPPVMPDDGHTTRVTTVAE 323 L A +L +NT + K+ + + QL SL+E + + D H + + Sbjct: 207 ISDLKAAAKLKSDNTEAFYKISRIYYQLGDHELSLSEVREC---LKLDQDHKQCFSLYKQ 263 Query: 324 LSPSGKDFSAVEPIWDD---EDTKAFYESL----PDLRVF 422 + K + E + ED + Y+S+ PD+ V+ Sbjct: 264 VKKLNKQIESAEEFIREGRYEDAISKYDSVMKTEPDVPVY 303
>GOGA3_MOUSE (P55937) Golgin subfamily A member 3 (Golgin-160) (Male-enhanced| antigen 2) (MEA-2) Length = 1487 Score = 31.2 bits (69), Expect = 1.2 Identities = 17/60 (28%), Positives = 30/60 (50%) Frame = +3 Query: 81 DAAVAVLQSEHASLRALESENAKILNAKGELSDENTALYEKLRKSFDQLLRCVSSLAEAL 260 D +A LQ EH + + + L AKG+ D+ Y++L+ ++L R S +A+ Sbjct: 705 DQQLAALQQEHLDVIKQLTSTQEALQAKGQSLDDLHTRYDELQARLEELQREADSREDAI 764
>MYSP_SCHMA (P06198) Paramyosin| Length = 866 Score = 30.8 bits (68), Expect = 1.6 Identities = 16/43 (37%), Positives = 26/43 (60%) Frame = +3 Query: 129 LESENAKILNAKGELSDENTALYEKLRKSFDQLLRCVSSLAEA 257 LESEN ++ + +L+D+N L + R+ DQ+ SSL +A Sbjct: 393 LESENLRLKSLVNDLTDKNNLLERENRQMNDQVKELKSSLRDA 435
>SMC3_PONPY (Q5R4K5) Structural maintenance of chromosome 3 (Chondroitin sulfate| proteoglycan 6) Length = 1217 Score = 30.4 bits (67), Expect = 2.0 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%) Frame = +3 Query: 120 LRALESENAKILNAK----GELSDENTALYEKLRKSFDQLLRCVSSLAEALDMQPPVMPD 287 +R L+ EN ++LN + G ++ T L E LRK DQ+ + ++ L E Sbjct: 804 IRQLQQENRQLLNERIKLEGIITRVETYLNENLRKRLDQVEQELNELRET---------- 853 Query: 288 DGHTTRVTTVAELSPSGK 341 +G T T +EL K Sbjct: 854 EGGTVLTATTSELEAINK 871
>SMC3_MOUSE (Q9CW03) Structural maintenance of chromosome 3 (Chondroitin sulfate| proteoglycan 6) (Chromosome segregation protein SmcD) (Bamacan) (Basement membrane-associated chondroitin proteoglycan) (Mad member-interacting protein 1) Length = 1217 Score = 30.4 bits (67), Expect = 2.0 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%) Frame = +3 Query: 120 LRALESENAKILNAK----GELSDENTALYEKLRKSFDQLLRCVSSLAEALDMQPPVMPD 287 +R L+ EN ++LN + G ++ T L E LRK DQ+ + ++ L E Sbjct: 804 IRQLQQENRQLLNERIKLEGIITRVETYLNENLRKRLDQVEQELNELRET---------- 853 Query: 288 DGHTTRVTTVAELSPSGK 341 +G T T +EL K Sbjct: 854 EGGTVLTATTSELEAINK 871
>SMC3_HUMAN (Q9UQE7) Structural maintenance of chromosome 3 (Chondroitin sulfate| proteoglycan 6) (Chromosome-associated polypeptide) (hCAP) (Bamacan) (Basement membrane-associated chondroitin proteoglycan) Length = 1217 Score = 30.4 bits (67), Expect = 2.0 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%) Frame = +3 Query: 120 LRALESENAKILNAK----GELSDENTALYEKLRKSFDQLLRCVSSLAEALDMQPPVMPD 287 +R L+ EN ++LN + G ++ T L E LRK DQ+ + ++ L E Sbjct: 804 IRQLQQENRQLLNERIKLEGIITRVETYLNENLRKRLDQVEQELNELRET---------- 853 Query: 288 DGHTTRVTTVAELSPSGK 341 +G T T +EL K Sbjct: 854 EGGTVLTATTSELEAINK 871
>SMC3_BOVIN (O97594) Structural maintenance of chromosome 3 (Chondroitin sulfate| proteoglycan 6) Length = 1218 Score = 30.4 bits (67), Expect = 2.0 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%) Frame = +3 Query: 120 LRALESENAKILNAK----GELSDENTALYEKLRKSFDQLLRCVSSLAEALDMQPPVMPD 287 +R L+ EN ++LN + G ++ T L E LRK DQ+ + ++ L E Sbjct: 804 IRQLQQENRQLLNERIKLEGIITRVETYLNENLRKRLDQVEQELNELRET---------- 853 Query: 288 DGHTTRVTTVAELSPSGK 341 +G T T +EL K Sbjct: 854 EGGTVLTATTSELEAINK 871
>GATB_STRP3 (Q8K618) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B| (EC 6.3.5.-) (Asp/Glu-ADT subunit B) Length = 479 Score = 30.4 bits (67), Expect = 2.0 Identities = 19/63 (30%), Positives = 32/63 (50%) Frame = +3 Query: 18 MGLNVTDDLKTFFKKALSSYYDAAVAVLQSEHASLRALESENAKILNAKGELSDENTALY 197 +GL+ D + KALS +++ AV++ L+ E A+ LNA+G+ +E Sbjct: 309 LGLSAYDASQLTATKALSDFFETAVSLGGDAKQVSNWLQGEVAQFLNAEGKTIEEIALTP 368 Query: 198 EKL 206 E L Sbjct: 369 ENL 371
>UVRC_ZYMMO (Q5NPR4) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 664 Score = 30.0 bits (66), Expect = 2.7 Identities = 12/39 (30%), Positives = 25/39 (64%) Frame = -2 Query: 222 DRKISEASHTRQYSHHLVHLWHLKSSHFQTPVHEETHVL 106 DR+++EAS +Q +V+L+HL + V++ +H++ Sbjct: 414 DRRLAEASTQKQLLKEMVNLFHLDKIPDRIEVYDNSHIM 452
>DRL21_ARATH (Q9LRR5) Putative disease resistance protein At3g14460| Length = 1424 Score = 30.0 bits (66), Expect = 2.7 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -1 Query: 346 KSFPEGDNSATVVTLVVCPSSGITGG 269 K FPEG S+T VT+ CP ++GG Sbjct: 882 KKFPEGLPSSTEVTISDCPLRAVSGG 907
>MYSP_OPIFE (Q9BMQ6) Paramyosin (Fragment)| Length = 638 Score = 30.0 bits (66), Expect = 2.7 Identities = 17/59 (28%), Positives = 31/59 (52%) Frame = +3 Query: 81 DAAVAVLQSEHASLRALESENAKILNAKGELSDENTALYEKLRKSFDQLLRCVSSLAEA 257 D + + H+ LE+EN ++ + +L D+N AL + R+ DQ+ S+L +A Sbjct: 358 DELTIEINNLHSQNSQLEAENMRLKSQVNDLVDKNAALDRENRQLSDQVKDLKSTLRDA 416
>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c| precursor Length = 943 Score = 29.6 bits (65), Expect = 3.5 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 2/121 (1%) Frame = -1 Query: 436 STPGTNTLRSGKDS*NAFVSSSSQIGSTAEKSFPEGDNSATVVTLVVCPSSGITGGCISR 257 ++ TN+ S + ++ SSS+ S A S +++ +T SS IT ++ Sbjct: 92 ASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLAS 151 Query: 256 ASAKDETQRNN*SKDFRSF--SYKAVFSSLSSPLAFKIXXXXXXXXXXXACSDWRTATAA 83 +S + ++ + S + A SSLSS A + TAT++ Sbjct: 152 SSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSS 211 Query: 82 S 80 S Sbjct: 212 S 212
>MUTS_AQUAE (O66652) DNA mismatch repair protein mutS| Length = 859 Score = 29.6 bits (65), Expect = 3.5 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%) Frame = +3 Query: 60 KALSSYYDAAVAVLQSEHASLRALESENAKILNAKGELSDENTALYEKLR----KSFDQL 227 K + SY+ + SE + L+ KIL+A+ ++D LY++LR K D++ Sbjct: 477 KYVPSYFRRRQTLSNSERFTTEELQRLEEKILSAQTRINDLEYELYKELRERVVKELDKV 536 Query: 228 LRCVSSLAE 254 S++AE Sbjct: 537 GNNASAVAE 545
>YXJG_BACSU (P42318) Hypothetical protein yxjG| Length = 378 Score = 29.3 bits (64), Expect = 4.5 Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 1/127 (0%) Frame = +3 Query: 39 DLKTFFKKALSSYYDAAVAVLQSEHASLRALESENA-KILNAKGELSDENTALYEKLRKS 215 D+ +KKA+ ++YD LQ + + SE K + A G DE L+ K Sbjct: 176 DVSKAYKKAIQAFYDRGCRYLQLDDTAWAVFLSEKGLKQIEAFGTTPDELRQLFAK---- 231 Query: 216 FDQLLRCVSSLAEALDMQPPVMPDDGHTTRVTTVAELSPSGKDFSAVEPIWDDEDTKAFY 395 S+ +A+ +P + H R + + G +A E I+D + + Sbjct: 232 ---------SINDAIADRPDDLTVTMHICRGNFQSTWTAEGGYDAAAETIFDGLNLDGLF 282 Query: 396 ESLPDLR 416 D R Sbjct: 283 LEYDDSR 289
>HRCA_BURPS (Q63R42) Heat-inducible transcription repressor hrcA| Length = 340 Score = 28.9 bits (63), Expect = 5.9 Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 3/114 (2%) Frame = +3 Query: 102 QSEHASLRALESENAKILNAKGELSDENTALYEKLRKSFDQLLRCVSSLAEALDMQPPVM 281 Q ++A + E+ N + G DE + +LR+ DQL +++L A Sbjct: 166 QRDYAPAQLTEASNYINAHFAGLSFDE---VRRRLREEIDQLRGDMTALMHAAVTASTEE 222 Query: 282 PDDGHTTRVT---TVAELSPSGKDFSAVEPIWDDEDTKAFYESLPDLRVFVPGV 434 PDD T ++ + E++ D + + ++D D K L D+ GV Sbjct: 223 PDDEETVLISGERNLLEVADLSSDMARLRKLFDVFDQKTSLLQLLDVSSHAQGV 276
>HRCA_BURMA (Q62HD0) Heat-inducible transcription repressor hrcA| Length = 340 Score = 28.9 bits (63), Expect = 5.9 Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 3/114 (2%) Frame = +3 Query: 102 QSEHASLRALESENAKILNAKGELSDENTALYEKLRKSFDQLLRCVSSLAEALDMQPPVM 281 Q ++A + E+ N + G DE + +LR+ DQL +++L A Sbjct: 166 QRDYAPAQLTEASNYINAHFAGLSFDE---VRRRLREEIDQLRGDMTALMHAAVTASTEE 222 Query: 282 PDDGHTTRVT---TVAELSPSGKDFSAVEPIWDDEDTKAFYESLPDLRVFVPGV 434 PDD T ++ + E++ D + + ++D D K L D+ GV Sbjct: 223 PDDEETVLISGERNLLEVADLSSDMARLRKLFDVFDQKTSLLQLLDVSSHAQGV 276
>HD_FUGRU (P51112) Huntingtin (Huntington disease protein homolog) (HD protein)| Length = 3148 Score = 28.9 bits (63), Expect = 5.9 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 3/66 (4%) Frame = +3 Query: 171 LSDENTALYEKLRKSFDQLLRCVSSLAEALDMQPPVMPDDGHTTRVTTVAELSP---SGK 341 LSD A + + F LL+ ++ A LD PP P +T LSP GK Sbjct: 1125 LSDR--AFVAMVEQLFSHLLKVLNICAHVLDDTPPGPPVKATLPSLTNTPSLSPIRRKGK 1182 Query: 342 DFSAVE 359 D AV+ Sbjct: 1183 DKDAVD 1188
>STCB_EMENI (Q12608) Probable sterigmatocystin biosynthesis P450 monooxygenase| STCB (EC 1.14.-.-) (Cytochrome P450 62) Length = 435 Score = 28.9 bits (63), Expect = 5.9 Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 9/89 (10%) Frame = +3 Query: 144 AKILNAKGELSDENTALYEKLRKSFDQLLRCVSSLAEALDMQPP---------VMPDDGH 296 A++ +GEL+DE L D+ LR + + PP +PDD Sbjct: 270 AEVATLEGELTDEACERLPILNAVIDESLRLYGAAPGCMPRSPPSGGVTIGGYFIPDDTI 329 Query: 297 TTRVTTVAELSPSGKDFSAVEPIWDDEDT 383 + +PS IWDD DT Sbjct: 330 VATQNWSLQRNPS---------IWDDADT 349
>RPOA_BORGA (Q661B8) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 344 Score = 28.9 bits (63), Expect = 5.9 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 7/88 (7%) Frame = +3 Query: 24 LNVTDDLKTFFKKA---LSSYYDAAVAVLQSEHASLRALESENAKILNAKGELSDENTAL 194 ++ D++ T F+K+ S+ D ++ L SL L EN + L GEL +N Sbjct: 243 IDFEDNINTSFEKSKSESSNLLDMSIEKLDLSVRSLNCLAKENVRTL---GELISKNAEE 299 Query: 195 YEKLR----KSFDQLLRCVSSLAEALDM 266 K R KS ++++ +SS L M Sbjct: 300 LSKARNFGKKSLEEIIEKLSSYQLFLGM 327
>ABCF1_MOUSE (Q6P542) ATP-binding cassette sub-family F member 1| Length = 837 Score = 28.9 bits (63), Expect = 5.9 Identities = 19/58 (32%), Positives = 30/58 (51%) Frame = +3 Query: 84 AAVAVLQSEHASLRALESENAKILNAKGELSDENTALYEKLRKSFDQLLRCVSSLAEA 257 A AVL+++ LR LE E +G+L + EKL K +++L ++ AEA Sbjct: 368 AVQAVLRADTKRLRLLEEER----RLQGQLEQGDDTAAEKLEKVYEELRATGAAAAEA 421
>ABCF1_RAT (Q6MG08) ATP-binding cassette sub-family F member 1 (ATP-binding| cassette 50) Length = 839 Score = 28.9 bits (63), Expect = 5.9 Identities = 19/58 (32%), Positives = 30/58 (51%) Frame = +3 Query: 84 AAVAVLQSEHASLRALESENAKILNAKGELSDENTALYEKLRKSFDQLLRCVSSLAEA 257 A AVL+++ LR LE E +G+L + EKL K +++L ++ AEA Sbjct: 370 AVQAVLRADTKRLRLLEEEK----RLQGQLEQGDDTAAEKLEKVYEELRATGAAAAEA 423
>YG1F_YEAST (P53214) Hypothetical 57.5 kDa protein in VMA7-RPS25A intergenic| region Length = 551 Score = 28.5 bits (62), Expect = 7.7 Identities = 26/93 (27%), Positives = 39/93 (41%) Frame = -1 Query: 445 SPNSTPGTNTLRSGKDS*NAFVSSSSQIGSTAEKSFPEGDNSATVVTLVVCPSSGITGGC 266 S +ST ++TL + + SS+ S + S S +V T V S T Sbjct: 154 STSSTVASSTLSTSSSLVISTSSSTFTFSSESSSSLISSSISTSVSTSSVYVPSSSTSSP 213 Query: 265 ISRASAKDETQRNN*SKDFRSFSYKAVFSSLSS 167 S +S + ++ S FSY + FSS SS Sbjct: 214 PSSSSELTSSSYSSSSSSSTLFSYSSSFSSSSS 246
>INVO_HYLLA (P17941) Involucrin| Length = 522 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/62 (24%), Positives = 27/62 (43%) Frame = -2 Query: 336 QKGITQXXXXXXLYVHHLA*QEAAYQELQLRMKHSAITDRKISEASHTRQYSHHLVHLWH 157 Q+G + + HL QE + L + K + ++++++ H Q L HL H Sbjct: 169 QEGQLELPEQQEGQLEHLEQQEGQLKHLDQQGKQPELPEQQVAQLKHLEQQEGQLKHLEH 228 Query: 156 LK 151 K Sbjct: 229 QK 230 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,193,023 Number of Sequences: 219361 Number of extensions: 1048799 Number of successful extensions: 3569 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 3479 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3565 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
