ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl47f09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FGD5_MOUSE (Q80UZ0) FYVE, RhoGEF and PH domain-containing protein 5 28 7.1

>FGD5_MOUSE (Q80UZ0) FYVE, RhoGEF and PH domain-containing protein 5|
          Length = 1219

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 284 LQPGNIFPHDGMVSRARGGDGENRHVFI 367
           LQPG  F  +G + R RG     RH+F+
Sbjct: 864 LQPGREFLKEGTLMRVRGKSRHPRHLFL 891


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,254,992
Number of Sequences: 219361
Number of extensions: 509864
Number of successful extensions: 1468
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1468
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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