ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl47f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK110648.1| Oryza sativa (japonica cultivar-group) cDNA clon... 182 4e-43
2gb|AC150751.1| Oryza sativa (japonica cultivar-group) chromosome... 155 9e-35
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 155 9e-35
4gb|AC116604.1| Genomic sequence for Oryza sativa, Nipponbare str... 155 9e-35
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 155 9e-35
6ref|XM_792191.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 0.92
7gb|AC091965.2| Homo sapiens chromosome 5 clone RP11-480D4, compl... 42 0.92
8gb|AC034217.6| Homo sapiens chromosome 5 clone CTD-2004D16, comp... 42 0.92
9gb|AC160516.1| Medicago truncatula chromosome 7 BAC clone mth2-6... 42 0.92
10gb|AC004074.1|AC004074 Homo Sapiens Chromosome X clone bWXD759, ... 42 0.92
11ref|NM_122259.1| Arabidopsis thaliana ATP binding / damaged DNA ... 40 3.7
12gb|AF295186.1| Dendrocopos major recombination activating protei... 40 3.7
13gb|AC140026.11| Medicago truncatula clone mth2-36j24, complete s... 40 3.7
14gb|AY228038.1| Sylvia atricapilla NRM 976380 recombination activ... 40 3.7
15emb|AL513265.4| Human DNA sequence from clone RP13-377L5 on chro... 40 3.7
16gb|AY165793.1| Megalaima virens recombination activating protein... 40 3.7
17gb|AY136434.2| Arabidopsis thaliana unknown protein (At5g23520) ... 40 3.7
18emb|AL136970.8| Human DNA sequence from clone RP1-238D4 on chrom... 40 3.7
19gb|BT000216.1| Arabidopsis thaliana unknown protein (At5g23520) ... 40 3.7
20gb|AC093689.4| Homo sapiens BAC clone RP11-725M22 from 4, comple... 40 3.7
21gb|AY057033.1| Sylvia nana recombination activating protein 1 (R... 40 3.7
22gb|AY057025.1| Psarisomus dalhousiae recombination activating pr... 40 3.7
23gb|AY057015.1| Pardalotus striatus recombination activating prot... 40 3.7
24gb|AY140765.1| Anhima cornuta recombination activating protein (... 40 3.7
25dbj|AB025633.2| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 3.7
26gb|AF143735.1|AF143735 Turnix hottentotta recombination activati... 40 3.7
27gb|AY756083.1| Turnix varia recombination activating protein (RA... 40 3.7 
>dbj|AK110648.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-169-D10, full
            insert sequence
          Length = 1255

 Score =  182 bits (92), Expect = 4e-43
 Identities = 230/276 (83%)
 Strand = Plus / Plus

                                                                        
Query: 5    catgaatttctcaccttgtttttgtctctgcttgagcgttcgttaagttactccaaggtc 64
            |||||||| ||||| || ||||||||| |||| ||| ||||  ||||| | |||||||| 
Sbjct: 860  catgaattcctcacattatttttgtctttgctcgagggttcactaagtcattccaaggtt 919

                                                                        
Query: 65   gctgttgcgaaaactattgtgcaagatttatttcgcgggagtgtgtcacatgtgactcgg 124
             | |  || | ||| ||||||||  |||| || || || |||||||| ||||| ||||||
Sbjct: 920  ccaggggctagaaccattgtgcagcatttgttccgtggaagtgtgtcccatgttactcgg 979

                                                                        
Query: 125  tgttcatcatgtggaagggattctgatgcatcttcaaaaatggaagacttctatgaactg 184
            || |||||||||||||||||||| || ||||||||||| ||||||||||| || ||||||
Sbjct: 980  tgctcatcatgtggaagggattccgaagcatcttcaaagatggaagacttttacgaactg 1039

                                                                        
Query: 185  gagctgaacattaaaggtttaagtaatttagaggaaagtctggatgactatttgagtgtg 244
            ||||| |||||||||||||||| |||| ||||  ||||| |||||||||||||||||   
Sbjct: 1040 gagcttaacattaaaggtttaaataatctagaacaaagtttggatgactatttgagtact 1099

                                                
Query: 245  gaggcactgaatggggagaaccaatattcctgtgag 280
            ||||||||| |||| |||||||| || | |||||||
Sbjct: 1100 gaggcactggatggagagaaccagtacttctgtgag 1135
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>gb|AC150751.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNOa0279P04, complete sequence
          Length = 32479

 Score =  155 bits (78), Expect = 9e-35
 Identities = 138/158 (87%)
 Strand = Plus / Plus

                                                                        
Query: 123  ggtgttcatcatgtggaagggattctgatgcatcttcaaaaatggaagacttctatgaac 182
            |||| |||||||||||||||||||| || ||||||||||| ||||||||||| || ||||
Sbjct: 3214 ggtgctcatcatgtggaagggattccgaagcatcttcaaagatggaagacttttacgaac 3273

                                                                        
Query: 183  tggagctgaacattaaaggtttaagtaatttagaggaaagtctggatgactatttgagtg 242
            ||||||| |||||||||||||||| |||| ||||  ||||| ||||||||||||||||| 
Sbjct: 3274 tggagcttaacattaaaggtttaaataatctagaacaaagtttggatgactatttgagta 3333

                                                  
Query: 243  tggaggcactgaatggggagaaccaatattcctgtgag 280
              ||||||||| |||| |||||||| || | |||||||
Sbjct: 3334 ctgaggcactggatggagagaaccagtacttctgtgag 3371
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  155 bits (78), Expect = 9e-35
 Identities = 138/158 (87%)
 Strand = Plus / Plus

                                                                           
Query: 123     ggtgttcatcatgtggaagggattctgatgcatcttcaaaaatggaagacttctatgaac 182
               |||| |||||||||||||||||||| || ||||||||||| ||||||||||| || ||||
Sbjct: 4819578 ggtgctcatcatgtggaagggattccgaagcatcttcaaagatggaagacttttacgaac 4819637

                                                                           
Query: 183     tggagctgaacattaaaggtttaagtaatttagaggaaagtctggatgactatttgagtg 242
               ||||||| |||||||||||||||| |||| ||||  ||||| ||||||||||||||||| 
Sbjct: 4819638 tggagcttaacattaaaggtttaaataatctagaacaaagtttggatgactatttgagta 4819697

                                                     
Query: 243     tggaggcactgaatggggagaaccaatattcctgtgag 280
                 ||||||||| |||| |||||||| || | |||||||
Sbjct: 4819698 ctgaggcactggatggagagaaccagtacttctgtgag 4819735
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>gb|AC116604.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0019D17, from chromosome 3, complete sequence
          Length = 129658

 Score =  155 bits (78), Expect = 9e-35
 Identities = 138/158 (87%)
 Strand = Plus / Minus

                                                                         
Query: 123   ggtgttcatcatgtggaagggattctgatgcatcttcaaaaatggaagacttctatgaac 182
             |||| |||||||||||||||||||| || ||||||||||| ||||||||||| || ||||
Sbjct: 15877 ggtgctcatcatgtggaagggattccgaagcatcttcaaagatggaagacttttacgaac 15818

                                                                         
Query: 183   tggagctgaacattaaaggtttaagtaatttagaggaaagtctggatgactatttgagtg 242
             ||||||| |||||||||||||||| |||| ||||  ||||| ||||||||||||||||| 
Sbjct: 15817 tggagcttaacattaaaggtttaaataatctagaacaaagtttggatgactatttgagta 15758

                                                   
Query: 243   tggaggcactgaatggggagaaccaatattcctgtgag 280
               ||||||||| |||| |||||||| || | |||||||
Sbjct: 15757 ctgaggcactggatggagagaaccagtacttctgtgag 15720
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  155 bits (78), Expect = 9e-35
 Identities = 138/158 (87%)
 Strand = Plus / Plus

                                                                           
Query: 123     ggtgttcatcatgtggaagggattctgatgcatcttcaaaaatggaagacttctatgaac 182
               |||| |||||||||||||||||||| || ||||||||||| ||||||||||| || ||||
Sbjct: 4819693 ggtgctcatcatgtggaagggattccgaagcatcttcaaagatggaagacttttacgaac 4819752

                                                                           
Query: 183     tggagctgaacattaaaggtttaagtaatttagaggaaagtctggatgactatttgagtg 242
               ||||||| |||||||||||||||| |||| ||||  ||||| ||||||||||||||||| 
Sbjct: 4819753 tggagcttaacattaaaggtttaaataatctagaacaaagtttggatgactatttgagta 4819812

                                                     
Query: 243     tggaggcactgaatggggagaaccaatattcctgtgag 280
                 ||||||||| |||| |||||||| || | |||||||
Sbjct: 4819813 ctgaggcactggatggagagaaccagtacttctgtgag 4819850
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>ref|XM_792191.1| PREDICTED: Strongylocentrotus purpuratus similar to CG3104-PA,
           isoform A (LOC592680), mRNA
          Length = 756

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 4   tcatgaatttctcaccttgtttttg 28
           ||||| |||||||||||||||||||
Sbjct: 756 tcatgcatttctcaccttgtttttg 732
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>gb|AC091965.2| Homo sapiens chromosome 5 clone RP11-480D4, complete sequence
          Length = 163656

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 17    accttgtttttgtctctgctt 37
             |||||||||||||||||||||
Sbjct: 99702 accttgtttttgtctctgctt 99722
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>gb|AC034217.6| Homo sapiens chromosome 5 clone CTD-2004D16, complete sequence
          Length = 123259

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 17     accttgtttttgtctctgctt 37
              |||||||||||||||||||||
Sbjct: 116303 accttgtttttgtctctgctt 116323
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>gb|AC160516.1| Medicago truncatula chromosome 7 BAC clone mth2-66d22, complete
            sequence
          Length = 116154

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 143  gattctgatgcatcttcaaaa 163
            |||||||||||||||||||||
Sbjct: 2848 gattctgatgcatcttcaaaa 2828
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>gb|AC004074.1|AC004074 Homo Sapiens Chromosome X clone bWXD759, complete sequence
          Length = 153578

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 17     accttgtttttgtctctgctt 37
              |||||||||||||||||||||
Sbjct: 141771 accttgtttttgtctctgctt 141791
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>ref|NM_122259.1| Arabidopsis thaliana ATP binding / damaged DNA binding AT5G23520
          mRNA, complete cds
          Length = 1308

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 17 accttgtttttgtctctgcttgag 40
          ||||||||| ||||||||||||||
Sbjct: 69 accttgtttctgtctctgcttgag 46
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>gb|AF295186.1| Dendrocopos major recombination activating protein 1 (RAG-1) gene,
           partial cds
          Length = 930

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 223 tctggatgactatttgagtg 242
           ||||||||||||||||||||
Sbjct: 696 tctggatgactatttgagtg 715
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>gb|AC140026.11| Medicago truncatula clone mth2-36j24, complete sequence
          Length = 162172

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                             
Query: 133   atgtggaagggattctgatgcatcttcaaaaatggaagacttctatga 180
             ||||||||| || ||||| || ||||| ||||||||||| || |||||
Sbjct: 54117 atgtggaagagactctgaagcttcttccaaaatggaagatttttatga 54070
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>gb|AY228038.1| Sylvia atricapilla NRM 976380 recombination activating protein 1
           (RAG1) gene, partial cds
          Length = 930

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 219 aaagtctggatgactatttgagtg 242
           |||| |||||||||||||||||||
Sbjct: 692 aaagcctggatgactatttgagtg 715
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>emb|AL513265.4| Human DNA sequence from clone RP13-377L5 on chromosome X, complete
             sequence
          Length = 49560

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   gattctgatgcatcttcaaa 162
             ||||||||||||||||||||
Sbjct: 29015 gattctgatgcatcttcaaa 29034
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>gb|AY165793.1| Megalaima virens recombination activating protein 1 (RAG-1) gene,
           partial cds
          Length = 1914

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 223 tctggatgactatttgagtg 242
           ||||||||||||||||||||
Sbjct: 696 tctggatgactatttgagtg 715
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>gb|AY136434.2| Arabidopsis thaliana unknown protein (At5g23520) mRNA, complete cds
          Length = 1700

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 17  accttgtttttgtctctgcttgag 40
           ||||||||| ||||||||||||||
Sbjct: 319 accttgtttctgtctctgcttgag 296
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>emb|AL136970.8| Human DNA sequence from clone RP1-238D4 on chromosome 6 Contains part
             of the ME1 gene for malic enzyme 1 (NADP-dependent,
             cytosolic), complete sequence
          Length = 43983

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    tctcaccttgtttttgtctc 32
             ||||||||||||||||||||
Sbjct: 28497 tctcaccttgtttttgtctc 28516
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>gb|BT000216.1| Arabidopsis thaliana unknown protein (At5g23520) mRNA, complete
          cds
          Length = 1424

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 17 accttgtttttgtctctgcttgag 40
          ||||||||| ||||||||||||||
Sbjct: 69 accttgtttctgtctctgcttgag 46
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>gb|AC093689.4| Homo sapiens BAC clone RP11-725M22 from 4, complete sequence
          Length = 167590

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 73     gaaaactattgtgcaagatttatt 96
              ||||||||||||||||| ||||||
Sbjct: 133247 gaaaactattgtgcaagctttatt 133224
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>gb|AY057033.1| Sylvia nana recombination activating protein 1 (RAG-1) gene, partial
            cds
          Length = 2872

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 219  aaagtctggatgactatttgagtg 242
            |||| |||||||||||||||||||
Sbjct: 1650 aaagcctggatgactatttgagtg 1673
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>gb|AY057025.1| Psarisomus dalhousiae recombination activating protein 1 (RAG-1)
            gene, partial cds
          Length = 2872

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  tctggatgactatttgagtg 242
            ||||||||||||||||||||
Sbjct: 1654 tctggatgactatttgagtg 1673
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>gb|AY057015.1| Pardalotus striatus recombination activating protein 1 (RAG-1) gene,
            partial cds
          Length = 2866

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  tctggatgactatttgagtg 242
            ||||||||||||||||||||
Sbjct: 1648 tctggatgactatttgagtg 1667
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>gb|AY140765.1| Anhima cornuta recombination activating protein (RAG-1) gene, partial
            cds
          Length = 2856

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 219  aaagtctggatgactatttgagtg 242
            |||| |||||||||||||||||||
Sbjct: 1665 aaagcctggatgactatttgagtg 1688
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>dbj|AB025633.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQM1
          Length = 81365

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 17    accttgtttttgtctctgcttgag 40
             ||||||||| ||||||||||||||
Sbjct: 10279 accttgtttctgtctctgcttgag 10302
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>gb|AF143735.1|AF143735 Turnix hottentotta recombination activating protein 1 (RAG-1) gene,
            partial cds
          Length = 2902

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  tctggatgactatttgagtg 242
            ||||||||||||||||||||
Sbjct: 1684 tctggatgactatttgagtg 1703
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>gb|AY756083.1| Turnix varia recombination activating protein (RAG-1) gene, partial
           cds
          Length = 930

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 223 tctggatgactatttgagtg 242
           ||||||||||||||||||||
Sbjct: 696 tctggatgactatttgagtg 715


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,804,464
Number of Sequences: 3902068
Number of extensions: 2804464
Number of successful extensions: 49985
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49926
Number of HSP's gapped (non-prelim): 59
length of query: 280
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 258
effective length of database: 17,147,199,772
effective search space: 4423977541176
effective search space used: 4423977541176
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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