>LGI3_MOUSE (Q8K406) Leucine-rich repeat LGI family member 3 precursor|
           (Leucine-rich glioma-inactivated protein 3) (Leubrin)
          Length = 548

 Score = 37.4 bits (85), Expect = 0.019
 Identities = 25/67 (37%), Positives = 31/67 (46%)
 Frame = +1

Query: 178 LLIQSSVDPLPLLPACSPSFSSLVDETFECEHGSSLPSASPVRSLSLGPQGISTRAISPM 357
           L++Q S    P  P C PS S   D  F C    S+P   P   +SL    +   A S +
Sbjct: 24  LMLQVSAKRPPKTPPCPPSCSCTRDTAF-CVDSKSVPKNLPSEVISLT---LVNAAFSEI 79

Query: 358 QDGALSH 378
           QDGA SH
Sbjct: 80  QDGAFSH 86

>LGI3_HUMAN (Q8N145) Leucine-rich repeat LGI family member 3 precursor|
           (Leucine-rich glioma-inactivated protein 3) (LGI1-like
           protein 4)
          Length = 548

 Score = 35.8 bits (81), Expect = 0.056
 Identities = 24/67 (35%), Positives = 31/67 (46%)
 Frame = +1

Query: 178 LLIQSSVDPLPLLPACSPSFSSLVDETFECEHGSSLPSASPVRSLSLGPQGISTRAISPM 357
           L++Q S    P  P C PS S   D  F C    ++P   P   +SL    +   A S +
Sbjct: 24  LMLQVSAKRPPKTPPCPPSCSCTRDTAF-CVDSKAVPRNLPSEVISLT---LVNAAFSEI 79

Query: 358 QDGALSH 378
           QDGA SH
Sbjct: 80  QDGAFSH 86

>RAD50_SULAC (O33600) DNA double-strand break repair rad50 ATPase|
          Length = 886

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +1

Query: 16  KFNANIDAKEAMRVNKIDIGQMEKIKYEKNSNSFDAKLHSLQSIENCDNMMDNELL 183
           + N+ I  +E +   +  + Q+E  K  K    ++AKL  LQ +E   N + NE+L
Sbjct: 473 RINSLIKEREELEATRNKL-QLELQKRSKEKGIYEAKLKELQRLEEEKNKLQNEIL 527

>ARODE_CHLTR (O84375) Shikimate biosynthesis protein aroDE [Includes:|
           3-dehydroquinate dehydratase (EC 4.2.1.10)
           (3-dehydroquinase) (Type I DHQase); Shikimate
           dehydrogenase (EC 1.1.1.25)]
          Length = 478

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = +1

Query: 232 SFSSLVDETFECEHGSSLPSASPVRSLSLGPQGISTRAISPMQDGALSHAQANNTSIVRP 411
           S SS  D    C    SLP  + V  + LG  G  +R +SP+     ++A++  +S V P
Sbjct: 137 SSSSTTDLLDICHQKRSLPENTTV--VCLGGMGRPSRILSPILQNPFTYARSTGSSPVAP 194

Query: 412 G 414
           G
Sbjct: 195 G 195

>ARODE_CHLMU (P56961) Shikimate biosynthesis protein aroDE [Includes:|
           3-dehydroquinate dehydratase (EC 4.2.1.10)
           (3-dehydroquinase) (Type I DHQase); Shikimate
           dehydrogenase (EC 1.1.1.25)]
          Length = 478

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 29/96 (30%), Positives = 42/96 (43%)
 Frame = +1

Query: 127 LHSLQSIENCDNMMDNELLIQSSVDPLPLLPACSPSFSSLVDETFECEHGSSLPSASPVR 306
           + SL + E+ D       ++ SS+D   L  A SP+  S  D    C    SLP  + V 
Sbjct: 106 IRSLHTSEHTDITQLYTQMLASSIDYYKL--AVSPA--STTDLLNICRQKHSLPQNTTV- 160

Query: 307 SLSLGPQGISTRAISPMQDGALSHAQANNTSIVRPG 414
            L LG  G S+R +SP+     ++        V PG
Sbjct: 161 -LCLGKIGQSSRILSPILQNPFTYTIPTGADPVAPG 195

>SFL1_YEAST (P20134) Flocculation suppression protein (SFL1 protein)|
          Length = 766

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
 Frame = +1

Query: 127 LHSLQSIENC--DNM--MDNELLIQSSVDPLPLLPACSPSFSSLVDETFECEHGSSLPSA 294
           L SL    NC  D++  +D+ +L       +  LPA S   S+L++     EH SSL  A
Sbjct: 644 LRSLNKAANCAPDSVTPLDSSVLTGPPPKNMDNLPAVS---SNLINSPMNVEHSSSLSQA 700

Query: 295 SPVRSLSLGPQGISTRAISPMQDGALSHAQANNTSIVRPGVGVNS 429
            P   + L    + T + +       +  +A+N+   R G GV S
Sbjct: 701 EPAPQIELPQPSLPTTSTTK------NTGEADNSK--RKGSGVYS 737

>ZIP1_SCHPO (Q10424) Transcription factor zip1|
          Length = 330

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 1/135 (0%)
 Frame = +1

Query: 1   SDASNKFNANIDAKEAMRVNKIDIGQMEKIKYEKNSNSFDAKLHSLQSIENCD-NMMDNE 177
           S  S   N+N   K   + N   I  ++++K E+ SN+F A L++  +  + +   +D  
Sbjct: 60  SQPSGSSNSNKQEKNVQQQNPEKISTLQQVKEEEVSNTFSAPLNATGNFSSANPASIDLA 119

Query: 178 LLIQSSVDPLPLLPACSPSFSSLVDETFECEHGSSLPSASPVRSLSLGPQGISTRAISPM 357
            L    +  LP     +   +S   E FE +   +  S   V S S+  QG ++  + P 
Sbjct: 120 YLDLQKLLTLPDHSKETQEKTSSQRELFEQKSSVASASKDNVSSSSI-LQGSASSKLLPD 178

Query: 358 QDGALSHAQANNTSI 402
           Q           T+I
Sbjct: 179 QSARQHQVLVGQTAI 193

>TAI12_MOUSE (Q8BGQ2) TGF-beta-induced apoptosis protein 12 (TAIP-12)|
          Length = 534

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
 Frame = +1

Query: 1   SDASNKFNANIDAKEAMRVNKIDIGQMEKIKYEKNSNSFDAKLHS-LQSIENCDNMMDNE 177
           S  +  F   I   E   ++     ++E++K E++S+   A L S ++S+  C  +++  
Sbjct: 299 SSQTQDFQEFIAENETAVMHLQSAEELERLKAEEDSSGSSASLDSSMESLGVC--ILEEP 356

Query: 178 LLIQSSVDP---LPLL-PACSPSFSSLVDETFECEHGSSLPSASPVRSLSLGP 324
           L +   + P    P+L  A  P  SS++  T   EH ++ P +SP   L+ GP
Sbjct: 357 LAVPQELCPGLAAPILIQAQLPPGSSVLCFTENSEHPAASPMSSP-SYLNSGP 408

>TBX3_RAT (Q7TST9) T-box transcription factor TBX3 (T-box protein 3)|
          Length = 743

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = -2

Query: 320 PSERERTGEAEGKLE----PCSHSKVSSTRDEKDGEQAG 216
           PSE E   EAE K E     C  +K+S+T  E+ G   G
Sbjct: 370 PSEAESDAEAESKEEHGPEACDTAKISTTTAEEPGRDKG 408

>ATL1P_ARATH (Q9XF63) RING-H2 finger protein ATL1P (RING-H2 finger protein ATL3)|
          Length = 324

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
 Frame = +1

Query: 148 ENCDNMMDNELLIQSSV--DPLPLLPACSPSFS-SLVDETFECEHGSSLPSASPV-RSLS 315
           ++C + ++  + +   V  D   LLP C+ SF    +D  F+        S  P+ R+  
Sbjct: 119 DSCKDGLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSH------STCPICRNTV 172

Query: 316 LGPQGISTRAISPMQDGALSHAQANN 393
           LGP+  S++ +  + D A +    NN
Sbjct: 173 LGPEQASSKRVEQVPDNAENAGTTNN 198

>TBX3_MOUSE (P70324) T-box transcription factor TBX3 (T-box protein 3)|
          Length = 741

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = -2

Query: 320 PSERERTGEAEGKLE----PCSHSKVSSTRDEKDGEQAG 216
           PSE E   EAE K E     C  +K+S+T  E+ G   G
Sbjct: 368 PSEAESDAEAESKEEHGPEACDAAKISTTTAEEPGRDKG 406

>EXU_DROME (P28750) Maternal protein exuperantia|
          Length = 532

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 8/125 (6%)
 Frame = +1

Query: 58  NKIDIGQMEKIKYEKNSNSFDAKLHSLQSIENCDNMMDNELLIQSSVDP--LPLLPACSP 231
           N  D+  +  I  EKN    D  L S+  +++ D     ELL  S  DP    + P    
Sbjct: 352 NGFDLNTLSAIWAEKNIEGLDIALQSIGRLKSKDKAELLELL-DSYFDPKKTTVKPVVKG 410

Query: 232 SFSSLVDETFECEHG------SSLPSASPVRSLSLGPQGISTRAISPMQDGALSHAQANN 393
           + ++  +       G       + PS+SP  S   G  G  +R++S + D        N 
Sbjct: 411 NSNNNNNYRRRNRRGGRQSVKDARPSSSPSASTEFGAGGDKSRSVSSLPDSTTKTPSPNK 470

Query: 394 TSIVR 408
             + R
Sbjct: 471 PRMHR 475


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,540,812
Number of Sequences: 219361
Number of extensions: 942313
Number of successful extensions: 2942
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2933
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)