Clone Name | bastl47f07 |
---|---|
Clone Library Name | barley_pub |
>gb|AC090054.2|AC090054 Oryza sativa chromosome 9 clone PAC0645D04, complete sequence Length = 139050 Score = 87.7 bits (44), Expect = 3e-14 Identities = 116/140 (82%) Strand = Plus / Minus Query: 115 tttgatgccaagctgcattccctacaaagtatagagaactgtgacaacatgatggacaat 174 |||||||| ||||||||| ||||||| | ||||| ||| ||||| || | ||||| ||| Sbjct: 96116 tttgatgcgaagctgcatgccctacagaatatagggaattgtgatgacgtaatggaaaat 96057 Query: 175 gaacttctcattcagagtagtgttgatcctcttccactgctgcctgcttgttcaccatct 234 ||| | |||||| ||| | |||| |||||||||||||||||||||||||||||||| Sbjct: 96056 agactccccattcaaagtggcattgagcctcttccactgctgcctgcttgttcaccatcg 95997 Query: 235 ttttcatctcttgttgatga 254 || || ||| |||||||||| Sbjct: 95996 ttctcttctgttgttgatga 95977
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 87.7 bits (44), Expect = 3e-14 Identities = 116/140 (82%) Strand = Plus / Minus Query: 115 tttgatgccaagctgcattccctacaaagtatagagaactgtgacaacatgatggacaat 174 |||||||| ||||||||| ||||||| | ||||| ||| ||||| || | ||||| ||| Sbjct: 5988955 tttgatgcgaagctgcatgccctacagaatatagggaattgtgatgacgtaatggaaaat 5988896 Query: 175 gaacttctcattcagagtagtgttgatcctcttccactgctgcctgcttgttcaccatct 234 ||| | |||||| ||| | |||| |||||||||||||||||||||||||||||||| Sbjct: 5988895 agactccccattcaaagtggcattgagcctcttccactgctgcctgcttgttcaccatcg 5988836 Query: 235 ttttcatctcttgttgatga 254 || || ||| |||||||||| Sbjct: 5988835 ttctcttctgttgttgatga 5988816
>dbj|AP006727.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0645D04 Length = 142890 Score = 87.7 bits (44), Expect = 3e-14 Identities = 116/140 (82%) Strand = Plus / Minus Query: 115 tttgatgccaagctgcattccctacaaagtatagagaactgtgacaacatgatggacaat 174 |||||||| ||||||||| ||||||| | ||||| ||| ||||| || | ||||| ||| Sbjct: 99886 tttgatgcgaagctgcatgccctacagaatatagggaattgtgatgacgtaatggaaaat 99827 Query: 175 gaacttctcattcagagtagtgttgatcctcttccactgctgcctgcttgttcaccatct 234 ||| | |||||| ||| | |||| |||||||||||||||||||||||||||||||| Sbjct: 99826 agactccccattcaaagtggcattgagcctcttccactgctgcctgcttgttcaccatcg 99767 Query: 235 ttttcatctcttgttgatga 254 || || ||| |||||||||| Sbjct: 99766 ttctcttctgttgttgatga 99747
>dbj|AK121112.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073I01, full insert sequence Length = 5984 Score = 79.8 bits (40), Expect = 7e-12 Identities = 115/140 (82%) Strand = Plus / Plus Query: 115 tttgatgccaagctgcattccctacaaagtatagagaactgtgacaacatgatggacaat 174 |||| ||| ||||||||| ||||||| | ||||| ||| ||||| || | ||||| ||| Sbjct: 2253 tttggtgcgaagctgcatgccctacagaatatagggaattgtgatgacgtaatggaaaat 2312 Query: 175 gaacttctcattcagagtagtgttgatcctcttccactgctgcctgcttgttcaccatct 234 ||| | |||||| ||| | |||| |||||||||||||||||||||||||||||||| Sbjct: 2313 agactccccattcaaagtggcattgagcctcttccactgctgcctgcttgttcaccatcg 2372 Query: 235 ttttcatctcttgttgatga 254 || || ||| |||||||||| Sbjct: 2373 ttctcttctgttgttgatga 2392
>ref|NM_015678.3| Homo sapiens neurobeachin (NBEA), mRNA Length = 10812 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 84 aaaaataaaatatgaaaagaattcaaa 110 |||||||||||||| |||||||||||| Sbjct: 10768 aaaaataaaatatgcaaagaattcaaa 10794
>gb|AC018977.9| Homo sapiens chromosome 10 clone RP11-386C23, complete sequence Length = 222810 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 69 tattgggcagatggaaaaaataa 91 ||||||||||||||||||||||| Sbjct: 77591 tattgggcagatggaaaaaataa 77613
>gb|AF467288.1| Homo sapiens BCL8B protein (BCL8B) mRNA, complete cds Length = 10812 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 84 aaaaataaaatatgaaaagaattcaaa 110 |||||||||||||| |||||||||||| Sbjct: 10768 aaaaataaaatatgcaaagaattcaaa 10794
>gb|AC012558.9| Homo sapiens chromosome 10 clone RP11-174J11, complete sequence Length = 179391 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 69 tattgggcagatggaaaaaataa 91 ||||||||||||||||||||||| Sbjct: 171102 tattgggcagatggaaaaaataa 171124
>gb|AC113431.2| Homo sapiens chromosome 5 clone RP11-90F2, complete sequence Length = 156789 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 84 aaaaataaaatatgaaaagaattcaaa 110 |||||||||||| |||||||||||||| Sbjct: 84622 aaaaataaaataggaaaagaattcaaa 84596
>gb|AC125057.5| Mus musculus BAC clone RP23-399K1 from chromosome 12, complete sequence Length = 182276 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 83 aaaaaataaaatatgaaaagaa 104 |||||||||||||||||||||| Sbjct: 120250 aaaaaataaaatatgaaaagaa 120229
>ref|XM_724307.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01616) partial mRNA Length = 3570 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 85 aaaataaaatatgaaaagaattcaaattct 114 |||||||||||||||||| | ||||||||| Sbjct: 2257 aaaataaaatatgaaaaggaatcaaattct 2286
>gb|AC154447.2| Mus musculus BAC clone RP23-185B14 from chromosome 16, complete sequence Length = 212505 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 77 agatggaaaaaataaaatatga 98 |||||||||||||||||||||| Sbjct: 118067 agatggaaaaaataaaatatga 118046
>gb|AC092130.3| Homo sapiens chromosome 16 clone RP11-148M9, complete sequence Length = 170514 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 80 tggaaaaaataaaatatgaaaa 101 |||||||||||||||||||||| Sbjct: 21563 tggaaaaaataaaatatgaaaa 21584
>gb|AC166487.6| Mus musculus chromosome 1, clone RP23-298A7, complete sequence Length = 187404 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 aaaatatgaaaagaattcaaa 110 ||||||||||||||||||||| Sbjct: 117742 aaaatatgaaaagaattcaaa 117762
>gb|AC084385.5| Mus musculus chromosome 15 clone RP23-54K18, complete sequence Length = 203712 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 85 aaaataaaatatgaaaagaattcaa 109 |||||||||||||||||||| |||| Sbjct: 97893 aaaataaaatatgaaaagaaatcaa 97917
>gb|AC121517.7| Mus musculus chromosome 15, clone RP23-120A12, complete sequence Length = 222681 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 85 aaaataaaatatgaaaagaattcaa 109 |||||||||||||||||||| |||| Sbjct: 207192 aaaataaaatatgaaaagaaatcaa 207168
>gb|AC121365.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0053E05, complete sequence Length = 196284 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 212 tgctgcctgcttgttcaccatcttt 236 |||| |||||||||||||||||||| Sbjct: 156287 tgctccctgcttgttcaccatcttt 156311
>gb|AC097111.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1014_C08, complete sequence Length = 95638 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 212 tgctgcctgcttgttcaccatcttt 236 |||| |||||||||||||||||||| Sbjct: 2592 tgctccctgcttgttcaccatcttt 2616
>emb|AL606862.8| Human DNA sequence from clone RP13-201I15 on chromosome 13 Contains a CpG island, complete sequence Length = 55149 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 85 aaaataaaatatgaaaagaat 105 ||||||||||||||||||||| Sbjct: 35111 aaaataaaatatgaaaagaat 35131
>emb|AL139083.15| Human DNA sequence from clone RP11-270C18 on chromosome 13 Contains the 3' end of the NBEA gene for neurobeachin (BCL8B FLJ10197 KIAA1544) and a novel gene, complete sequence Length = 162081 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 84 aaaaataaaatatgaaaagaattca 108 |||||||||||||| |||||||||| Sbjct: 63953 aaaaataaaatatgcaaagaattca 63977
>emb|AL136362.10| Human DNA sequence from clone RP13-136L2 on chromosome X Contains a eukaryotic translation initiation factor 4A, isoform 1 (EIF4A1) pseudogene, complete sequence Length = 135240 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 83 aaaaaataaaatatgaaaagaattcaaat 111 |||||||||||||| |||| ||||||||| Sbjct: 12764 aaaaaataaaatattaaaaaaattcaaat 12736
>gb|AC023442.17| Homo sapiens chromosome 11, clone RP11-375D13, complete sequence Length = 177644 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 aaaataaaatatgaaaagaat 105 ||||||||||||||||||||| Sbjct: 11049 aaaataaaatatgaaaagaat 11029
>gb|AC016382.8| Homo sapiens, clone RP11-25I11, complete sequence Length = 153988 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 97 gaaaagaattcaaattctttt 117 ||||||||||||||||||||| Sbjct: 113377 gaaaagaattcaaattctttt 113357
>gb|AC025212.5|AC025212 Homo sapiens chromosome 18, clone RP11-289A1, complete sequence Length = 182258 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 97 gaaaagaattcaaattctttt 117 ||||||||||||||||||||| Sbjct: 3528 gaaaagaattcaaattctttt 3548
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 212 tgctgcctgcttgttcaccatcttt 236 |||| |||||||||||||||||||| Sbjct: 26305239 tgctccctgcttgttcaccatcttt 26305263
>gb|AC010685.3|AC010685 Homo sapiens BAC clone RP11-465A8 from Y, complete sequence Length = 160302 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 83 aaaaaataaaatatgaaaagaattcaaat 111 |||||||||||||| |||| ||||||||| Sbjct: 119139 aaaaaataaaatattaaaaaaattcaaat 119111
>dbj|AP006140.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT37A01, TM0244, complete sequence Length = 102724 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 95 atgaaaagaattcaaattctt 115 ||||||||||||||||||||| Sbjct: 63095 atgaaaagaattcaaattctt 63075
>gb|AC155652.25| Mus musculus 6 BAC RP24-480I7 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 121680 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 cagatggaaaaaataaaatat 96 ||||||||||||||||||||| Sbjct: 32646 cagatggaaaaaataaaatat 32666
>gb|AC162280.4| Mus musculus chromosome 3, clone RP24-240C19, complete sequence Length = 165299 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 84 aaaaataaaatatgaaaagaattca 108 |||||||||||||| |||||||||| Sbjct: 104965 aaaaataaaatatgcaaagaattca 104989
>gb|AF536787.1| Begonia maynensis trnC-trnD intergenic spacer region, chloroplast sequence Length = 1664 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 gaaaaaataaaatatgaaaa 101 |||||||||||||||||||| Sbjct: 152 gaaaaaataaaatatgaaaa 133
>gb|AC152953.1| Mus musculus 10 BAC RP23-403E19 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 211343 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 ataaaatatgaaaagaattc 107 |||||||||||||||||||| Sbjct: 71518 ataaaatatgaaaagaattc 71537
>gb|AC163666.2| Mus musculus BAC clone RP23-46B12 from chromosome 9, complete sequence Length = 213408 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 gcagatggaaaaaataaaat 94 |||||||||||||||||||| Sbjct: 162036 gcagatggaaaaaataaaat 162055
>ref|XM_640006.1| Dictyostelium discoideum hypothetical protein (DDB0217032), partial mRNA Length = 1761 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 aaaaaataaaatatgaaaagaatt 106 |||||||||||||| ||||||||| Sbjct: 1212 aaaaaataaaatattaaaagaatt 1235
>gb|AE014833.1| Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence Length = 252394 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aaaaataaaatatgaaaaga 103 |||||||||||||||||||| Sbjct: 234105 aaaaataaaatatgaaaaga 234124
>gb|AE014849.1| Plasmodium falciparum 3D7 chromosome 12, section 6 of 9 of the complete sequence Length = 250421 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 agatggaaaaaataaaatat 96 |||||||||||||||||||| Sbjct: 63815 agatggaaaaaataaaatat 63796
>gb|AF125314.2| Mus musculus chromosome X clones MP1-C03180, MP1-C22301, CT7-374D15, proximal part, complete sequence Length = 300285 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gatgccaagctgcattccct 137 |||||||||||||||||||| Sbjct: 54829 gatgccaagctgcattccct 54848
>gb|AC134595.3| Mus musculus BAC clone RP23-388E14 from chromosome 15, complete sequence Length = 189263 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 gaaaaaataaaatatgaaaa 101 |||||||||||||||||||| Sbjct: 153416 gaaaaaataaaatatgaaaa 153397
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 aaataaaatatgaaaagaat 105 |||||||||||||||||||| Sbjct: 12220840 aaataaaatatgaaaagaat 12220859
>gb|DQ157860.1| Corynebacterium ammoniagenes secreted protein gene, partial cds; and RNA polymerase alpha operon, partial sequence Length = 3761 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 tttgccttctgcttctcctg 301 |||||||||||||||||||| Sbjct: 1794 tttgccttctgcttctcctg 1775
>gb|AC124467.3| Mus musculus BAC clone RP24-163L18 from chromosome 15, complete sequence Length = 169366 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 gaaaaaataaaatatgaaaa 101 |||||||||||||||||||| Sbjct: 149812 gaaaaaataaaatatgaaaa 149831
>gb|AC115680.3| Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence Length = 90373 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 83 aaaaaataaaatatgaaaagaatt 106 |||||||||||||| ||||||||| Sbjct: 15366 aaaaaataaaatattaaaagaatt 15343
>gb|AC174291.12| Medicago truncatula clone mth2-58k14, complete sequence Length = 117627 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 aataagtttaatgcaaatat 32 |||||||||||||||||||| Sbjct: 113349 aataagtttaatgcaaatat 113330
>emb|CR759732.9| Zebrafish DNA sequence from clone DKEY-183E23 in linkage group 14, complete sequence Length = 225630 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 311 tttcacttggtcctcaaggcataa 334 |||||||||||| ||||||||||| Sbjct: 8136 tttcacttggtcatcaaggcataa 8159
>emb|CR626934.1| Triticum aestivum Length = 94398 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 aaaaaataaaatatgaaaag 102 |||||||||||||||||||| Sbjct: 27341 aaaaaataaaatatgaaaag 27322
>emb|CR626926.1| Aegilops tauschii Length = 94421 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 aaaaaataaaatatgaaaag 102 |||||||||||||||||||| Sbjct: 25436 aaaaaataaaatatgaaaag 25417
>gb|AC146225.2| Pan troglodytes BAC clone RP43-32E8 from 7, complete sequence Length = 171272 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 gaaaaaataaaatatgaaaa 101 |||||||||||||||||||| Sbjct: 12714 gaaaaaataaaatatgaaaa 12695
>gb|AC126042.3| Mus musculus BAC clone RP24-303J10 from chromosome 18, complete sequence Length = 173064 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 83 aaaaaataaaatatgaaaagaattcaaa 110 |||| |||||||||||||| |||||||| Sbjct: 77506 aaaatataaaatatgaaaaaaattcaaa 77533
>gb|U95743.1|HUU95743 Homo sapiens chromosome 16 BAC clone CIT987-SK65D3, complete sequence Length = 192730 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 gcataagcaccagagctatt 348 |||||||||||||||||||| Sbjct: 137431 gcataagcaccagagctatt 137450
>gb|AC133124.3| Homo sapiens 3 BAC RP11-312A19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 119915 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 84 aaaaataaaatatgaaaagaattc 107 ||||||| |||||||||||||||| Sbjct: 110062 aaaaatagaatatgaaaagaattc 110039
>emb|Z68000.1|CEC05C9 Caenorhabditis elegans Cosmid C05C9, complete sequence Length = 33734 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 gaaaaaataaaatatgaaaa 101 |||||||||||||||||||| Sbjct: 8808 gaaaaaataaaatatgaaaa 8827
>gb|AC116598.3| Mus musculus BAC clone RP24-419D22 from chromosome 5, complete sequence Length = 175438 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 gttctagtttgccttctgct 294 |||||||||||||||||||| Sbjct: 11879 gttctagtttgccttctgct 11860
>gb|AC123790.4| Mus musculus BAC clone RP24-287C19 from chromosome 1, complete sequence Length = 175833 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aaaaataaaatatgaaaaga 103 |||||||||||||||||||| Sbjct: 21187 aaaaataaaatatgaaaaga 21168
>gb|AC127273.3| Mus musculus BAC clone RP24-142K18 from chromosome 6, complete sequence Length = 174882 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 85 aaaataaaatatgaaaagaattca 108 |||||||||||||||||| ||||| Sbjct: 147625 aaaataaaatatgaaaaggattca 147602
>gb|AC129325.4| Mus musculus BAC clone RP23-255J24 from 1, complete sequence Length = 194106 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aaaaataaaatatgaaaaga 103 |||||||||||||||||||| Sbjct: 11123 aaaaataaaatatgaaaaga 11142
>gb|AC100511.12| Mus musculus chromosome 3, clone RP23-144N19, complete sequence Length = 200790 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 gtctcatgcccaagctaata 391 |||||||||||||||||||| Sbjct: 71058 gtctcatgcccaagctaata 71039
>gb|AC162933.2| Mus musculus BAC clone RP23-148J22 from chromosome 12, complete sequence Length = 236972 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tgaacatggttctagtttgc 286 |||||||||||||||||||| Sbjct: 179161 tgaacatggttctagtttgc 179180
>emb|AL805915.9| Human DNA sequence from clone RP11-118H17 on chromosome 10 Contains a novel gene, complete sequence Length = 103488 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 tgtgaacagctatttcccac 439 |||||||||||||||||||| Sbjct: 15807 tgtgaacagctatttcccac 15788
>emb|AL590553.8| Human DNA sequence from clone RP11-272G1 on chromosome 6, complete sequence Length = 171882 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 cctcttccactgctgcctgc 221 |||||||||||||||||||| Sbjct: 105146 cctcttccactgctgcctgc 105127
>emb|AL389887.7| Human DNA sequence from clone RP11-54F22 on chromosome Xq21.1-21.31 Contains the 5' end of the RPS6KA6 gene for ribosomal protein S6 kinase (90kD) polypeptide 6 and a CpG island, complete sequence Length = 143220 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 tttaatgcaaatatagatgc 38 |||||||||||||||||||| Sbjct: 68013 tttaatgcaaatatagatgc 68032
>emb|AL160275.14| Human DNA sequence from clone RP11-402G3 on chromosome 9 Contains the ATP6V1G1 gene for ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G isoform 1 (ATP6G, ATP6GL), a novel gene (DKFZp547P234), a novel gene, a pseudogene similar to part of ribosomal protein L7 (RPL7), a pseudogene similar to part of ARP3 actin-related protein 3 homolog (yeast) (ACTR3) and three CpG islands, complete sequence Length = 189709 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aaaaataaaatatgaaaaga 103 |||||||||||||||||||| Sbjct: 94891 aaaaataaaatatgaaaaga 94872
>gb|AC119619.5| Homo sapiens X BAC RP11-1J4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 94158 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 aaaaaataaaatatgaaaag 102 |||||||||||||||||||| Sbjct: 59203 aaaaaataaaatatgaaaag 59184
>gb|AC093548.4| Drosophila melanogaster 3L BAC RP98-15B4 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 171697 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 gaaaaaataaaatatgaaaa 101 |||||||||||||||||||| Sbjct: 61434 gaaaaaataaaatatgaaaa 61415
>gb|AC105174.7| Mus musculus chromosome 5, clone RP24-230L5, complete sequence Length = 179947 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 gttctagtttgccttctgct 294 |||||||||||||||||||| Sbjct: 106121 gttctagtttgccttctgct 106140
>emb|CR548612.1| Paramecium tetraurelia macronuclear largest chromosome, complete sequence Length = 984602 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 84 aaaaataaaatatgaaaagaattc 107 ||||||||||||||||| |||||| Sbjct: 596268 aaaaataaaatatgaaatgaattc 596245
>emb|AL845484.9| Mouse DNA sequence from clone RP23-336L14 on chromosome 11 Contains the 3' end of the Sez6 gene for seizure related gene 6, complete sequence Length = 47702 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 215 tgcctgcttgttcaccatcttttt 238 |||||||||||||||| ||||||| Sbjct: 38319 tgcctgcttgttcaccttcttttt 38296
>emb|CR388069.10| Zebrafish DNA sequence from clone DKEY-65D16 in linkage group 3, complete sequence Length = 219206 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 aaaaaataaaatatgaaaag 102 |||||||||||||||||||| Sbjct: 163192 aaaaaataaaatatgaaaag 163211
>gb|AC132215.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0076E06, from chromosome 3, complete sequence Length = 126323 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 aaataaaatatgaaaagaat 105 |||||||||||||||||||| Sbjct: 113449 aaataaaatatgaaaagaat 113468
>gb|AC091714.3| Papio anubis clone RP41-93A16, complete sequence Length = 135851 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 tgatgccaagctgcattccc 136 |||||||||||||||||||| Sbjct: 45960 tgatgccaagctgcattccc 45941
>emb|CR318624.8| Zebrafish DNA sequence from clone CH211-227I15 in linkage group 24, complete sequence Length = 170084 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 aaaataaaatatgaaaagaa 104 |||||||||||||||||||| Sbjct: 54495 aaaataaaatatgaaaagaa 54514
>gb|AC010006.8| Drosophila melanogaster 3L BAC RP98-20A11 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 169735 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 gaaaaaataaaatatgaaaa 101 |||||||||||||||||||| Sbjct: 80503 gaaaaaataaaatatgaaaa 80484
>emb|BX682550.7| Zebrafish DNA sequence from clone DKEY-93N13 in linkage group 3, complete sequence Length = 149762 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 aaaaaataaaatatgaaaag 102 |||||||||||||||||||| Sbjct: 85693 aaaaaataaaatatgaaaag 85712
>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome Length = 2878529 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 aaataaaatatgaaaagaat 105 |||||||||||||||||||| Sbjct: 1958372 aaataaaatatgaaaagaat 1958353
>gb|AC068556.10| Homo sapiens chromosome 10 clone RP11-415G6, complete sequence Length = 182913 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 tgtgaacagctatttcccac 439 |||||||||||||||||||| Sbjct: 82688 tgtgaacagctatttcccac 82707
>gb|AC068060.5| Homo sapiens chromosome 10 clone RP11-359B3, complete sequence Length = 182912 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 tgtgaacagctatttcccac 439 |||||||||||||||||||| Sbjct: 100220 tgtgaacagctatttcccac 100201
>gb|AC092284.2| Homo sapiens chromosome 5 clone CTD-2160D9, complete sequence Length = 107044 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 aaaaaataaaatatgaaaag 102 |||||||||||||||||||| Sbjct: 19066 aaaaaataaaatatgaaaag 19047
>gb|AC099652.2| Homo sapiens BAC clone RP11-750J7 from 7, complete sequence Length = 152754 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 85 aaaataaaatatgaaaagaattcaaatt 112 ||||||| ||||||| |||||||||||| Sbjct: 135147 aaaataatatatgaagagaattcaaatt 135120
>emb|BX247946.6| Zebrafish DNA sequence from clone CH211-231B5 in linkage group 14, complete sequence Length = 156559 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 311 tttcacttggtcctcaaggcataa 334 |||||||||||| ||||||||||| Sbjct: 79446 tttcacttggtcatcaaggcataa 79423
>gb|AC154363.2| Mus musculus BAC clone RP23-154K12 from chromosome 13, complete sequence Length = 203241 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 82 gaaaaaataaaatatgaaaagaattcaaattc 113 ||||||| |||||||||||| ||||| ||||| Sbjct: 123442 gaaaaaagaaaatatgaaaacaattccaattc 123411
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 aaataaaatatgaaaagaat 105 |||||||||||||||||||| Sbjct: 12217603 aaataaaatatgaaaagaat 12217622
>gb|AC010705.15|AC010705 Drosophila melanogaster, chromosome X, region 12D-12E, BAC clone BACR28F21, complete sequence Length = 163958 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 aaaataaaatatgaaaagaattca 108 ||||| |||||||||||||||||| Sbjct: 118129 aaaatcaaatatgaaaagaattca 118152
>gb|AF285760.1|AF285760 Staphylococcus aureus enterotoxin gene cluster, complete sequence Length = 6418 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 aaataaaatatgaaaagaat 105 |||||||||||||||||||| Sbjct: 1427 aaataaaatatgaaaagaat 1446
>gb|AC133436.2| Homo sapiens 3 BAC RP13-486I7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 115667 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 84 aaaaataaaatatgaaaagaattc 107 ||||||| |||||||||||||||| Sbjct: 60766 aaaaatagaatatgaaaagaattc 60743
>gb|AC073257.6| Homo sapiens BAC clone RP11-213H22 from 2, complete sequence Length = 120488 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 agatggaaaaaataaaatat 96 |||||||||||||||||||| Sbjct: 8976 agatggaaaaaataaaatat 8995
>gb|AC019181.4| Homo sapiens BAC clone RP11-272E3 from 2, complete sequence Length = 190998 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 gaaaaaataaaatatgaaaa 101 |||||||||||||||||||| Sbjct: 119797 gaaaaaataaaatatgaaaa 119778
>gb|AC092875.2| Sus scrofa clone RP44-476K1, complete sequence Length = 155710 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aaaaataaaatatgaaaaga 103 |||||||||||||||||||| Sbjct: 154292 aaaaataaaatatgaaaaga 154311
>gb|AC096883.2| Sus scrofa clone RP44-276G17, complete sequence Length = 148088 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aaaaataaaatatgaaaaga 103 |||||||||||||||||||| Sbjct: 72361 aaaaataaaatatgaaaaga 72380
>gb|AC116910.11| Homo sapiens chromosome 17, clone CTD-2573C9, complete sequence Length = 149156 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 aaaataaaatatgaaaagaa 104 |||||||||||||||||||| Sbjct: 137922 aaaataaaatatgaaaagaa 137903
>gb|AC113407.2| Homo sapiens chromosome 5 clone RP11-475J5, complete sequence Length = 186648 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 aaaaaataaaatatgaaaag 102 |||||||||||||||||||| Sbjct: 11650 aaaaaataaaatatgaaaag 11631
>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome Length = 2814816 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 aaataaaatatgaaaagaat 105 |||||||||||||||||||| Sbjct: 1880579 aaataaaatatgaaaagaat 1880560
>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome Length = 1358633 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 gaaaaaataaaatatgaaaa 101 |||||||||||||||||||| Sbjct: 1332014 gaaaaaataaaatatgaaaa 1331995
>dbj|AP000421.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:T13C12 Length = 72800 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 aataaaatatgaaaagaatt 106 |||||||||||||||||||| Sbjct: 13463 aataaaatatgaaaagaatt 13444
>dbj|AB010076.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUB3 Length = 82188 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 aaaataaaatatgaaaagaa 104 |||||||||||||||||||| Sbjct: 662 aaaataaaatatgaaaagaa 643
>emb|CT025545.28| Mouse DNA sequence from clone RP24-88C18 on chromosome 12, complete sequence Length = 266295 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tgaacatggttctagtttgc 286 |||||||||||||||||||| Sbjct: 470 tgaacatggttctagtttgc 451
>gb|AC124762.4| Mus musculus BAC clone RP23-155A10 from 6, complete sequence Length = 199207 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 aaaataaaatatgaaaagaattca 108 |||||||||||||||||| ||||| Sbjct: 157187 aaaataaaatatgaaaaggattca 157210
>gb|AE003494.4| Drosophila melanogaster chromosome X, section 46 of 74 of the complete sequence Length = 310498 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 aaaataaaatatgaaaagaattca 108 ||||| |||||||||||||||||| Sbjct: 82317 aaaatcaaatatgaaaagaattca 82340
>gb|AE003474.4| Drosophila melanogaster chromosome 3L, section 8 of 83 of the complete sequence Length = 312072 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 gaaaaaataaaatatgaaaa 101 |||||||||||||||||||| Sbjct: 281456 gaaaaaataaaatatgaaaa 281475
>gb|AC115761.12| Mus musculus chromosome 7, clone RP23-62N10, complete sequence Length = 215013 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 85 aaaataaaatatgaaaagaattca 108 ||||||||||||||| |||||||| Sbjct: 61629 aaaataaaatatgaacagaattca 61606
>dbj|AP002961.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-2I22, complete sequence Length = 157903 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 aaaatatgaaaagaattcaaattc 113 ||||||||||||| |||||||||| Sbjct: 108741 aaaatatgaaaagtattcaaattc 108718
>dbj|AP000684.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-57N12, complete sequences Length = 141977 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 taaaatatgaaaagaattcaaatt 112 ||||||| |||||||||||||||| Sbjct: 56256 taaaataggaaaagaattcaaatt 56279
>emb|AL772299.10| Mouse DNA sequence from clone RP23-158L6 on chromosome 2, complete sequence Length = 203368 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 gaaaaaataaaatatgaaaa 101 |||||||||||||||||||| Sbjct: 199991 gaaaaaataaaatatgaaaa 199972
>gb|AC151323.2| Xenopus tropicalis clone ISB-253E6, complete sequence Length = 74805 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 tatgaaaagaattcaaattctttt 117 ||||||||||||| |||||||||| Sbjct: 8526 tatgaaaagaatttaaattctttt 8549
>gb|AC122538.4| Mus musculus BAC clone RP24-548J11 from 16, complete sequence Length = 209585 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 aaaatatgaaaagaattcaa 109 |||||||||||||||||||| Sbjct: 59218 aaaatatgaaaagaattcaa 59199
>gb|AF058825.1|AF058825 Arabidopsis thaliana BAC F7N22 Length = 110157 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 aataaaatatgaaaagaatt 106 |||||||||||||||||||| Sbjct: 25831 aataaaatatgaaaagaatt 25850
>emb|CT025673.8| Mouse DNA sequence from clone RP24-286H7 on chromosome 9, complete sequence Length = 148870 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 gcagatggaaaaaataaaat 94 |||||||||||||||||||| Sbjct: 37249 gcagatggaaaaaataaaat 37268
>emb|AL772272.14| Mouse DNA sequence from clone RP23-369I8 on chromosome 4, complete sequence Length = 129858 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 85 aaaataaaatatgaaaagaattca 108 |||||||||||| ||||||||||| Sbjct: 66803 aaaataaaatataaaaagaattca 66780
>emb|AL831724.7| Mouse DNA sequence from clone RP23-405G17 on chromosome X, complete sequence Length = 100597 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 cagatggaaaaaataaaata 95 |||||||||||||||||||| Sbjct: 8740 cagatggaaaaaataaaata 8759
>emb|AL731843.14| Mouse DNA sequence from clone RP23-300F6 on chromosome X, complete sequence Length = 226657 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gatgccaagctgcattccct 137 |||||||||||||||||||| Sbjct: 147911 gatgccaagctgcattccct 147930
>dbj|AB046764.1| Homo sapiens mRNA for KIAA1544 protein, partial cds Length = 4831 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 84 aaaaataaaatatgaaaagaattc 107 |||||||||||||| ||||||||| Sbjct: 4808 aaaaataaaatatgcaaagaattc 4831 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,724,992 Number of Sequences: 3902068 Number of extensions: 6724992 Number of successful extensions: 154286 Number of sequences better than 10.0: 109 Number of HSP's better than 10.0 without gapping: 109 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 153721 Number of HSP's gapped (non-prelim): 565 length of query: 468 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 446 effective length of database: 17,147,199,772 effective search space: 7647651098312 effective search space used: 7647651098312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)