>YC47_SCHPO (O14053) Hypothetical WD-repeat protein C1672.07 in chromosome III|
          Length = 902

 Score = 67.4 bits (163), Expect = 9e-12
 Identities = 32/71 (45%), Positives = 44/71 (61%)
 Frame = +2

Query: 95  IFEPFRAIGYITTGGVPFSLQRLGTETFVTVSVGKAFHVYNCAKLTLVLAGPQLPKKIRA 274
           I+ PFR+IG+++   VPF ++  GT   VT SVG  F  Y+C KL L+  G QL K+I  
Sbjct: 23  IYAPFRSIGHVSNA-VPFDIEARGTHFLVTTSVGNTFQTYDCEKLNLLFVGKQLDKEITC 81

Query: 275 LASFKEYTFAA 307
           L SFK++   A
Sbjct: 82  LKSFKDFMLVA 92

>YL409_YEAST (Q06078) Hypothetical 104.8 kDa Trp-Asp repeats-containing protein|
           in RPL31B-VIP1 intergenic region
          Length = 939

 Score = 52.0 bits (123), Expect = 4e-07
 Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
 Frame = +2

Query: 95  IFEPFRAIGYITTGGVPFSLQRLGTETFVTVSVGKAFHVYNCAKLTLV-LAGPQLPKKIR 271
           IF PFR IG ++ G VPF+   LG+  ++   VGK F +Y+   L L+ ++  + P  I 
Sbjct: 23  IFSPFRIIGNVSNG-VPFATGTLGSTFYIVTCVGKTFQIYDANTLHLLFVSEKETPSSIV 81

Query: 272 ALASFKEYTFAAY 310
           AL++   Y +AAY
Sbjct: 82  ALSAHFHYVYAAY 94

>WDR36_HUMAN (Q8NI36) WD repeat-containing protein 36 (T-cell activation WD|
           repeat-containing protein) (TA-WDRP)
          Length = 951

 Score = 44.3 bits (103), Expect = 8e-05
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
 Frame = +2

Query: 95  IFEPFRAIGYITTGGVPFSLQ--RLGTETFVTVSVGKAFHVYNCAKLTLVLAGPQLPKKI 268
           +F  FRA+G + +  +P  ++   L    +VT  VGK+FH Y+  KL+LV     +P+ I
Sbjct: 69  LFAGFRALG-LFSNDIPHVVRFSALKRRFYVTTCVGKSFHTYDVQKLSLVAVSNSVPQDI 127

Query: 269 RALASFKEYTFAAY 310
             +A+     FAAY
Sbjct: 128 CCMAADGRLVFAAY 141

>TRUD_METMA (Q8Q0M2) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)|
           (tRNA-uridine isomerase D) (tRNA pseudouridylate
           synthase D)
          Length = 438

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 125 ITTGGVP--FSLQRLGTETFVTVSVGKAFHVYNCAKLTLVLAGPQLPKK 265
           +  GGVP  F +QR G+   VT  VGKA    N  K  L+      P++
Sbjct: 161 LAQGGVPNFFGIQRFGSVRPVTHLVGKAIVEGNFEKAALLYIAEPFPEE 209

>Y111_METJA (Q57575) Hypothetical protein MJ0111|
          Length = 396

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 137 GVPFSLQRLGTETFVTVSVGKAFH 208
           GVPF L   G + F  V+ GKA+H
Sbjct: 141 GVPFELTLEGAKKFAEVAKGKAYH 164

>SYN_XYLFT (Q87A82) Asparaginyl-tRNA synthetase (EC 6.1.1.22)|
           (Asparagine--tRNA ligase) (AsnRS)
          Length = 466

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 131 TGGVPFSLQRLGTETFVTVSVGKAFHVYNCAKLTLVLAGP 250
           TGG+ FS    G ETF+TVS       Y  A   +   GP
Sbjct: 192 TGGIDFSHDFFGKETFLTVSGQLNVEAYALALSKVYTFGP 231

>SYN_XYLFA (Q9PAF5) Asparaginyl-tRNA synthetase (EC 6.1.1.22)|
           (Asparagine--tRNA ligase) (AsnRS)
          Length = 466

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 131 TGGVPFSLQRLGTETFVTVSVGKAFHVYNCAKLTLVLAGP 250
           TGG+ FS    G ETF+TVS       Y  A   +   GP
Sbjct: 192 TGGIDFSHDFFGKETFLTVSGQLNVEAYALALSKVYTFGP 231

>SYN_YERPS (Q66CG7) Asparaginyl-tRNA synthetase (EC 6.1.1.22)|
           (Asparagine--tRNA ligase) (AsnRS)
          Length = 466

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +2

Query: 131 TGGVPFSLQRLGTETFVTVSVGKAFHVYNCAKLTLVLAGP 250
           TG V FS    G E F+TVS       Y CA   +   GP
Sbjct: 192 TGAVDFSEDFFGKEAFLTVSGQLNGETYACALSKVYTFGP 231

>SYN_YERPE (P58697) Asparaginyl-tRNA synthetase (EC 6.1.1.22)|
           (Asparagine--tRNA ligase) (AsnRS)
          Length = 466

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +2

Query: 131 TGGVPFSLQRLGTETFVTVSVGKAFHVYNCAKLTLVLAGP 250
           TG V FS    G E F+TVS       Y CA   +   GP
Sbjct: 192 TGAVDFSEDFFGKEAFLTVSGQLNGETYACALSKVYTFGP 231


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,091,833
Number of Sequences: 219361
Number of extensions: 384087
Number of successful extensions: 1135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 80,573,946
effective HSP length: 78
effective length of database: 63,463,788
effective search space used: 1523130912
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)