>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  210 bits (106), Expect = 2e-51
 Identities = 124/130 (95%)
 Strand = Plus / Plus

                                                                            
Query: 88       gatggggatcttcgagccgttccgcgcgatcgggtacatcaccacgggcggcgtgccctt 147
                ||||||||||||||||||||||||||| ||||||||||||||  | ||||||||||||||
Sbjct: 25920276 gatggggatcttcgagccgttccgcgccatcgggtacatcacggccggcggcgtgccctt 25920335

                                                                            
Query: 148      ctccctgcagcgcctcggcaccgagaccttcgtcaccgtcagcgtcggcaaggccttcca 207
                |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 25920336 ctccgtgcagcgcctcggcaccgagaccttcgtcgccgtcagcgtcggcaaggccttcca 25920395

                          
Query: 208      cgtctacaac 217
                ||||||||||
Sbjct: 25920396 cgtctacaac 25920405



 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                            
Query: 245      ggacctcaactgcccaagaagatccgcgcccttgcatccttcaaggaatacacatttgct 304
                ||||||||| |||||||||||||||| || |||||||| | |||||| || |||||||||
Sbjct: 25920889 ggacctcaattgcccaagaagatccgtgctcttgcatcgtacaaggattatacatttgct 25920948

                     
Query: 305      gcgta 309
                |||||
Sbjct: 25920949 gcgta 25920953



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 7        cctctaaaaccctcgccgccggcgcaccc 35
                |||||||||||||||||| ||||||||||
Sbjct: 25920145 cctctaaaaccctcgccggcggcgcaccc 25920173

>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0017B12
          Length = 157424

 Score =  210 bits (106), Expect = 2e-51
 Identities = 124/130 (95%)
 Strand = Plus / Plus

                                                                         
Query: 88    gatggggatcttcgagccgttccgcgcgatcgggtacatcaccacgggcggcgtgccctt 147
             ||||||||||||||||||||||||||| ||||||||||||||  | ||||||||||||||
Sbjct: 75374 gatggggatcttcgagccgttccgcgccatcgggtacatcacggccggcggcgtgccctt 75433

                                                                         
Query: 148   ctccctgcagcgcctcggcaccgagaccttcgtcaccgtcagcgtcggcaaggccttcca 207
             |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 75434 ctccgtgcagcgcctcggcaccgagaccttcgtcgccgtcagcgtcggcaaggccttcca 75493

                       
Query: 208   cgtctacaac 217
             ||||||||||
Sbjct: 75494 cgtctacaac 75503



 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                         
Query: 245   ggacctcaactgcccaagaagatccgcgcccttgcatccttcaaggaatacacatttgct 304
             ||||||||| |||||||||||||||| || |||||||| | |||||| || |||||||||
Sbjct: 75987 ggacctcaattgcccaagaagatccgtgctcttgcatcgtacaaggattatacatttgct 76046

                  
Query: 305   gcgta 309
             |||||
Sbjct: 76047 gcgta 76051



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 7     cctctaaaaccctcgccgccggcgcaccc 35
             |||||||||||||||||| ||||||||||
Sbjct: 75243 cctctaaaaccctcgccggcggcgcaccc 75271

>ref|NM_116732.2| Arabidopsis thaliana nucleotide binding AT4G04940 mRNA, complete
           cds
          Length = 3058

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                       
Query: 167 accgagaccttcgtcaccgtcagcgtcggcaaggccttccacgtctacaactgtgccaag 226
           |||||||| ||||||||||||||||||||||| || |||||  | || || |||||||||
Sbjct: 217 accgagactttcgtcaccgtcagcgtcggcaaagctttccagatttataattgtgccaag 276

               
Query: 227 ctca 230
           ||||
Sbjct: 277 ctca 280

>gb|AY096634.1| Arabidopsis thaliana putative WD-repeat membrane protein
           (At4g04940) mRNA, complete cds
          Length = 2764

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                       
Query: 167 accgagaccttcgtcaccgtcagcgtcggcaaggccttccacgtctacaactgtgccaag 226
           |||||||| ||||||||||||||||||||||| || |||||  | || || |||||||||
Sbjct: 76  accgagactttcgtcaccgtcagcgtcggcaaagctttccagatttataattgtgccaag 135

               
Query: 227 ctca 230
           ||||
Sbjct: 136 ctca 139

>gb|AY059784.1| Arabidopsis thaliana putative WD-repeat membrane protein
           (At4g04940) mRNA, complete cds
          Length = 3056

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                       
Query: 167 accgagaccttcgtcaccgtcagcgtcggcaaggccttccacgtctacaactgtgccaag 226
           |||||||| ||||||||||||||||||||||| || |||||  | || || |||||||||
Sbjct: 200 accgagactttcgtcaccgtcagcgtcggcaaagctttccagatttataattgtgccaag 259

               
Query: 227 ctca 230
           ||||
Sbjct: 260 ctca 263

>emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 14
          Length = 198563

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                      
Query: 167   accgagaccttcgtcaccgtcagcgtcggcaaggccttcca 207
             |||||||| ||||||||||||||||||||||| || |||||
Sbjct: 48992 accgagactttcgtcaccgtcagcgtcggcaaagctttcca 48952

>gb|AF128393.1|T1J1 Arabidopsis thaliana BAC T1J1
          Length = 53778

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                      
Query: 167   accgagaccttcgtcaccgtcagcgtcggcaaggccttcca 207
             |||||||| ||||||||||||||||||||||| || |||||
Sbjct: 41045 accgagactttcgtcaccgtcagcgtcggcaaagctttcca 41005

>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 186     tcagcgtcggcaaggccttcca 207
               ||||||||||||||||||||||
Sbjct: 3118989 tcagcgtcggcaaggccttcca 3118968

>gb|AC124765.2| Mus musculus BAC clone RP23-197D9 from 2, complete sequence
          Length = 191781

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 68     ccgccgcggccggggggaggg 88
              |||||||||||||||||||||
Sbjct: 116898 ccgccgcggccggggggaggg 116918

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 54      gaagccctcgacgtccgccgcggcc 78
               |||||||||||||||| ||||||||
Sbjct: 3871302 gaagccctcgacgtcctccgcggcc 3871278

>emb|AL844840.8| Mouse DNA sequence from clone RP23-337P9 on chromosome 2, complete
              sequence
          Length = 219568

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 68     ccgccgcggccggggggaggg 88
              |||||||||||||||||||||
Sbjct: 186113 ccgccgcggccggggggaggg 186093

>ref|NM_191199.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1164

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 192 tcggcaaggccttccacgtctaca 215
           |||||||||| |||||||||||||
Sbjct: 455 tcggcaaggcgttccacgtctaca 478

>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 94      gatcttcgagccgttccgcg 113
               ||||||||||||||||||||
Sbjct: 2681512 gatcttcgagccgttccgcg 2681531

>gb|AF314590.3| Bradyrhizobium japonicum putative cyclic NTP-binding protein gene,
             partial cds; LuxA-like protein, MDO-like protein, and
             AraC-like protein genes, complete cds; nap operon,
             complete sequence; exodeoxyribosylnuclease EdrN (edrN)
             genes, complete cds; and putative sensor protein gene,
             partial cds
          Length = 11020

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   gcaccgagaccttcgtcacc 184
             ||||||||||||||||||||
Sbjct: 10003 gcaccgagaccttcgtcacc 9984

>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 184     cgtcagcgtcggcaaggcct 203
               ||||||||||||||||||||
Sbjct: 2539541 cgtcagcgtcggcaaggcct 2539522

>emb|CR354346.1| Gallus gallus finished cDNA, clone ChEST76l18
          Length = 846

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 68 ccgccgcggccggggggagg 87
          ||||||||||||||||||||
Sbjct: 20 ccgccgcggccggggggagg 39

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 192      tcggcaaggccttccacgtctaca 215
                |||||||||| |||||||||||||
Sbjct: 31280817 tcggcaaggcgttccacgtctaca 31280794

>dbj|AP003076.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0481E12
          Length = 161563

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 192   tcggcaaggccttccacgtctaca 215
             |||||||||| |||||||||||||
Sbjct: 35100 tcggcaaggcgttccacgtctaca 35077

>gb|AC134575.3| Mus musculus BAC clone RP24-67I21 from chromosome 14, complete sequence
          Length = 172103

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 72    cgcggccggggggagggatgggga 95
             |||||||||||||||||| |||||
Sbjct: 88780 cgcggccggggggagggaggggga 88757

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 165     gcaccgagaccttcgtcacc 184
               ||||||||||||||||||||
Sbjct: 7757179 gcaccgagaccttcgtcacc 7757160

>dbj|AK122148.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138H13, full
           insert sequence
          Length = 1333

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 192 tcggcaaggccttccacgtctaca 215
           |||||||||| |||||||||||||
Sbjct: 477 tcggcaaggcgttccacgtctaca 500

>dbj|AK073826.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067F03, full
           insert sequence
          Length = 1333

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 192 tcggcaaggccttccacgtctaca 215
           |||||||||| |||||||||||||
Sbjct: 477 tcggcaaggcgttccacgtctaca 500

>gb|AC145927.3| Gallus gallus BAC clone CH261-29M22 from chromosome unknown, complete
             sequence
          Length = 227692

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    ccgccgcggccggggggagg 87
             ||||||||||||||||||||
Sbjct: 71587 ccgccgcggccggggggagg 71568


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,160,230
Number of Sequences: 3902068
Number of extensions: 2160230
Number of successful extensions: 44358
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43904
Number of HSP's gapped (non-prelim): 454
length of query: 310
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 288
effective length of database: 17,147,199,772
effective search space: 4938393534336
effective search space used: 4938393534336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)