>PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
          Length = 908

 Score = 38.9 bits (89), Expect = 0.005
 Identities = 19/39 (48%), Positives = 28/39 (71%)
 Frame = +2

Query: 308 QLELYVVRAQDVDPGVQRLALESMRQEIRLATSSMTSVP 424
           +LE+ V R  + D  + R ALE +R++IR +T+SMTSVP
Sbjct: 55  ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVP 93

>PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
           (Tumor necrosis factor type 1 receptor-associated
           protein 2) (55.11 protein)
          Length = 908

 Score = 38.9 bits (89), Expect = 0.005
 Identities = 19/39 (48%), Positives = 28/39 (71%)
 Frame = +2

Query: 308 QLELYVVRAQDVDPGVQRLALESMRQEIRLATSSMTSVP 424
           +LE+ V R  + D  + R ALE +R++IR +T+SMTSVP
Sbjct: 55  ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVP 93

>RPN1_SCHPO (P87048) 26S proteasome regulatory subunit rpn1 (Proteasome|
           non-ATPase subunit mts4) (19S regulatory cap region of
           26S protease subunit 2)
          Length = 891

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 17/38 (44%), Positives = 24/38 (63%)
 Frame = +2

Query: 311 LELYVVRAQDVDPGVQRLALESMRQEIRLATSSMTSVP 424
           LEL V   QD  P +   +L  +++ IR +TSSMT+VP
Sbjct: 57  LELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTAVP 94

>RPN1_YEAST (P38764) 26S proteasome regulatory subunit RPN1 (Proteasome|
           non-ATPase subunit 1)
          Length = 992

 Score = 32.7 bits (73), Expect = 0.37
 Identities = 15/38 (39%), Positives = 26/38 (68%)
 Frame = +2

Query: 311 LELYVVRAQDVDPGVQRLALESMRQEIRLATSSMTSVP 424
           LEL V R ++ D  +   +L ++++ I+ +TSSMT+VP
Sbjct: 48  LELLVERLKEDDSSLYEASLNALKESIKNSTSSMTAVP 85

>RPN1_NEUCR (Q7S8R8) 26S proteasome regulatory subunit rpn-1|
          Length = 883

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 14/30 (46%), Positives = 22/30 (73%)
 Frame = +2

Query: 335 QDVDPGVQRLALESMRQEIRLATSSMTSVP 424
           Q+ D  + + ALE+M+  I+ +TSSMT+VP
Sbjct: 48  QESDATLYKPALEAMKNSIKTSTSSMTAVP 77

>DYNA_RAT (P28023) Dynactin-1 (150 kDa dynein-associated polypeptide)|
           (DP-150) (DAP-150) (p150-glued)
          Length = 1280

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +3

Query: 9   AAKQSKAEILQKINPHAAAPSRLRTTRPPNPSQPAS 116
           AAK SK   L+ + P  A  +R  TTR P P++PAS
Sbjct: 125 AAKTSK---LRGLKPKKAPTARKTTTRRPKPTRPAS 157

>DYNA_MOUSE (O08788) Dynactin-1 (150 kDa dynein-associated polypeptide)|
           (DP-150) (DAP-150) (p150-glued)
          Length = 1281

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +3

Query: 9   AAKQSKAEILQKINPHAAAPSRLRTTRPPNPSQPAS 116
           AAK SK   L+ + P  A  +R  TTR P P++PAS
Sbjct: 125 AAKTSK---LRGLKPKKAPTARKTTTRRPKPTRPAS 157

>PCY2_RAT (O88637) Ethanolamine-phosphate cytidylyltransferase (EC 2.7.7.14)|
           (Phosphorylethanolamine transferase)
           (CTP:phosphoethanolamine cytidylyltransferase)
          Length = 404

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 134 IRFGDGAGGLARVRGASGTEATRRCCVGVY 45
           IR G GAGG A ++G  G    R  C G Y
Sbjct: 2   IRNGHGAGGAAGLKGPGGQRTVRVWCDGCY 31

>ODO2_HUMAN (P36957) Dihydrolipoyllysine-residue succinyltransferase component|
           of 2-oxoglutarate dehydrogenase complex, mitochondrial
           precursor (EC 2.3.1.61) (Dihydrolipoamide
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex) (E2) (E2
          Length = 453

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = +3

Query: 3   APAAKQSKAEILQKINPHAAAPSRLRTTRPPNPSQPAS 116
           APAA   KAE      P  AAP   +    P+PSQP S
Sbjct: 158 APAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPS 195

>AGRN_HUMAN (O00468) Agrin precursor|
          Length = 2045

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 6    PAAKQSKAEILQKINPHAAAPSRLRTTRPPNPSQP 110
            P AK + A   ++  P   APSR+   RPP P QP
Sbjct: 1297 PVAKTTAAPTTRR--PPTTAPSRVPGRRPPAPQQP 1329

>DYNA_HUMAN (Q14203) Dynactin-1 (150 kDa dynein-associated polypeptide)|
           (DP-150) (DAP-150) (p150-glued) (p135)
          Length = 1278

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 21  SKAEILQKINPHAAAPSRLRTTRPPNPSQPAS 116
           +K   L+ + P  A  +R  TTR P P++PAS
Sbjct: 126 AKTSKLRGLKPKKAPTARKTTTRRPKPTRPAS 157

>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2161

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 70   VASVPLAPRTLASPPAPSPNRIRPA 144
            +A VPLAP    +PP+P+P R   A
Sbjct: 1135 LAQVPLAPPQPGAPPSPAPARFSTA 1159


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,282,766
Number of Sequences: 219361
Number of extensions: 362618
Number of successful extensions: 1907
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1903
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)