ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl47e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1XKR6_RAT (Q5GH57) XK-related protein 6 32 0.31
2EPS8_HUMAN (Q12929) Epidermal growth factor receptor kinase subs... 31 0.69
3EPS8_PONPY (Q5R4H4) Epidermal growth factor receptor kinase subs... 30 2.0
4EPS8_MOUSE (Q08509) Epidermal growth factor receptor kinase subs... 30 2.0
5IF2_GLUOX (Q5FQM3) Translation initiation factor IF-2 29 3.4
6BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic ch... 28 5.9
7BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 prot... 28 5.9
8DPOL_HCMVA (P08546) DNA polymerase (EC 2.7.7.7) 28 7.7
9DIAP3_HUMAN (Q9NSV4) Protein diaphanous homolog 3 (Diaphanous-re... 28 7.7

>XKR6_RAT (Q5GH57) XK-related protein 6|
          Length = 638

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 17/33 (51%), Positives = 20/33 (60%)
 Frame = +3

Query: 198 LSGDIIRNSSAAAKGGRQRRRPRDAAGSNPPPP 296
           L G   R S+AAA GG Q  +P  AAG +PP P
Sbjct: 75  LLGKKPRRSAAAADGGDQPLQPPGAAGRHPPTP 107



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>EPS8_HUMAN (Q12929) Epidermal growth factor receptor kinase substrate 8|
          Length = 822

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
 Frame = +3

Query: 192 AQLSGDIIRNSSAAAKGGRQRRRP------RDAAGSNPPPPR 299
           A L  + I ++ + +KGG+Q+RRP       +A  S PPPPR
Sbjct: 173 ANLISEDIESAISDSKGGKQKRRPDALRMISNADPSIPPPPR 214



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>EPS8_PONPY (Q5R4H4) Epidermal growth factor receptor kinase substrate 8|
          Length = 822

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
 Frame = +3

Query: 192 AQLSGDIIRNSSAAAKGGRQRRRP------RDAAGSNPPPPR 299
           A L  + I ++ + +KGG+Q+RRP       +A    PPPPR
Sbjct: 173 ANLISEDIESAISDSKGGKQKRRPDALRMISNADPGIPPPPR 214



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>EPS8_MOUSE (Q08509) Epidermal growth factor receptor kinase substrate 8|
          Length = 821

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
 Frame = +3

Query: 192 AQLSGDIIRNSSAAAKGGRQRRRP---RDAAGSNP--PPPRRA 305
           A L  + I ++ + +KGG+Q+RRP   R  A ++P  PPP RA
Sbjct: 173 ANLISEDIESAISDSKGGKQKRRPEALRMIAKADPGIPPPPRA 215



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>IF2_GLUOX (Q5FQM3) Translation initiation factor IF-2|
          Length = 917

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = +3

Query: 225 SAAAKGGRQRRRP---RDAAGSNPPPPRR 302
           S AA GG   RRP   R   G+ P PPRR
Sbjct: 245 SGAAAGGDDERRPAPRRSGPGAPPAPPRR 273



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>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic|
           chromosome-associated protein) (MCAP)
          Length = 1400

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 204 GDIIRNSSAAAKGGRQRRRPRDAAGSNPPPP 296
           GD +  S  +    + + +P +AA +NPPPP
Sbjct: 18  GDGLETSQMSTTQAQAQPQPANAASTNPPPP 48



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>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)|
          Length = 1362

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 204 GDIIRNSSAAAKGGRQRRRPRDAAGSNPPPP 296
           GD +  S  +    + + +P +AA +NPPPP
Sbjct: 18  GDGLETSQMSTTQAQAQPQPANAASTNPPPP 48



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>DPOL_HCMVA (P08546) DNA polymerase (EC 2.7.7.7)|
          Length = 1242

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 198 LSGDIIRNSSAAAKGGRQRRRPRDAAGSNPPPPRR 302
           LSG +     A A G RQR +P  A GS   PP++
Sbjct: 7   LSGGV--TGGAVAGGRRQRSQPGSAQGSGKRPPQK 39



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>DIAP3_HUMAN (Q9NSV4) Protein diaphanous homolog 3 (Diaphanous-related formin-3)|
           (DRF3)
          Length = 1110

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 222 SSAAAKGGRQRRRPRDAAGSNPPPP 296
           SSA+ +G R+ + PR     +PPPP
Sbjct: 23  SSASLRGCRESKMPRRKGPQHPPPP 47


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,336,738
Number of Sequences: 219361
Number of extensions: 167537
Number of successful extensions: 1473
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1463
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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