ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl47e06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC144742.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0052F16, complete sequence Length = 162082 Score = 107 bits (54), Expect = 2e-20 Identities = 69/74 (93%) Strand = Plus / Minus Query: 120 ctcgcctgcgccgcgctcgtgggcgcctccgcggccgccgcctccgcctactacctgcac 179 ||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||| Sbjct: 144328 ctcgcctgcgccgcgctggtgggcgcctccgtcgccgccgcctccggctactacctgcac 144269 Query: 180 tgccgcgccgtcgc 193 |||||| ||||||| Sbjct: 144268 tgccgctccgtcgc 144255
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 107 bits (54), Expect = 2e-20 Identities = 69/74 (93%) Strand = Plus / Minus Query: 120 ctcgcctgcgccgcgctcgtgggcgcctccgcggccgccgcctccgcctactacctgcac 179 ||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||| Sbjct: 16352975 ctcgcctgcgccgcgctggtgggcgcctccgtcgccgccgcctccggctactacctgcac 16352916 Query: 180 tgccgcgccgtcgc 193 |||||| ||||||| Sbjct: 16352915 tgccgctccgtcgc 16352902 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 cgcctccgcggccgccgcctccgcc 167 ||||||||||||||||||| ||||| Sbjct: 14377111 cgcctccgcggccgccgccgccgcc 14377135 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 cgcggccgccgcctccgcct 168 |||||||||||||||||||| Sbjct: 29321556 cgcggccgccgcctccgcct 29321575 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 ccgcggccgccgcctccgcc 167 |||||||||||||||||||| Sbjct: 18355829 ccgcggccgccgcctccgcc 18355848
>ref|XM_988549.1| PREDICTED: Mus musculus forkhead box D1 (Foxd1), mRNA Length = 366 Score = 48.1 bits (24), Expect = 0.016 Identities = 30/32 (93%) Strand = Plus / Plus Query: 133 cgctcgtgggcgcctccgcggccgccgcctcc 164 ||||||||| |||| ||||||||||||||||| Sbjct: 242 cgctcgtggtcgccgccgcggccgccgcctcc 273
>gb|AC121839.3| Mus musculus BAC clone RP24-76E2 from chromosome 13, complete sequence Length = 182835 Score = 48.1 bits (24), Expect = 0.016 Identities = 30/32 (93%) Strand = Plus / Plus Query: 133 cgctcgtgggcgcctccgcggccgccgcctcc 164 ||||||||| |||| ||||||||||||||||| Sbjct: 77671 cgctcgtggtcgccgccgcggccgccgcctcc 77702
>gb|AC090436.37| Chlamydomonas reinhardtii clone cr-3h1, complete sequence Length = 102653 Score = 48.1 bits (24), Expect = 0.016 Identities = 27/28 (96%) Strand = Plus / Plus Query: 141 ggcgcctccgcggccgccgcctccgcct 168 ||||||||||||||||||||| |||||| Sbjct: 96708 ggcgcctccgcggccgccgccgccgcct 96735
>gb|AC090435.28| Chlamydomonas reinhardtii clone cr-32m22, complete sequence Length = 79677 Score = 48.1 bits (24), Expect = 0.016 Identities = 27/28 (96%) Strand = Plus / Minus Query: 141 ggcgcctccgcggccgccgcctccgcct 168 ||||||||||||||||||||| |||||| Sbjct: 33165 ggcgcctccgcggccgccgccgccgcct 33138
>dbj|AK142034.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched library, clone:D230009L10 product:forkhead box D1, full insert sequence Length = 2839 Score = 48.1 bits (24), Expect = 0.016 Identities = 30/32 (93%) Strand = Plus / Plus Query: 133 cgctcgtgggcgcctccgcggccgccgcctcc 164 ||||||||| |||| ||||||||||||||||| Sbjct: 1626 cgctcgtggtcgccgccgcggccgccgcctcc 1657
>dbj|AK132390.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:4122401E09 product:forkhead box D1, full insert sequence Length = 2445 Score = 48.1 bits (24), Expect = 0.016 Identities = 30/32 (93%) Strand = Plus / Plus Query: 133 cgctcgtgggcgcctccgcggccgccgcctcc 164 ||||||||| |||| ||||||||||||||||| Sbjct: 1622 cgctcgtggtcgccgccgcggccgccgcctcc 1653
>dbj|AK164408.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched library, clone:D230010K09 product:forkhead box D1, full insert sequence Length = 2461 Score = 48.1 bits (24), Expect = 0.016 Identities = 30/32 (93%) Strand = Plus / Plus Query: 133 cgctcgtgggcgcctccgcggccgccgcctcc 164 ||||||||| |||| ||||||||||||||||| Sbjct: 1624 cgctcgtggtcgccgccgcggccgccgcctcc 1655
>gb|AC166107.4| Mus musculus BAC clone RP23-205A7 from chromosome 6, complete sequence Length = 177843 Score = 46.1 bits (23), Expect = 0.065 Identities = 23/23 (100%) Strand = Plus / Plus Query: 7 cttccttccttcctccaccccct 29 ||||||||||||||||||||||| Sbjct: 80423 cttccttccttcctccaccccct 80445
>gb|BC016474.1| Homo sapiens CCR4-NOT transcription complex, subunit 3, mRNA (cDNA clone MGC:17152 IMAGE:4181383), complete cds Length = 2831 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 143 cgcctccgcggccgccgcctccgcct 168 ||||||||| |||||||||||||||| Sbjct: 1493 cgcctccgctgccgccgcctccgcct 1468
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 143 cgcctccgcggccgccgcctccgcct 168 ||||||||||||||||||| |||||| Sbjct: 28246259 cgcctccgcggccgccgccgccgcct 28246234 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 ccgcggccgccgcctccgcct 168 ||||||||||||||||||||| Sbjct: 26671525 ccgcggccgccgcctccgcct 26671505 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 141 ggcgcctccgcggccgccgcctccg 165 |||||| |||||||||||||||||| Sbjct: 15465055 ggcgccgccgcggccgccgcctccg 15465079
>gb|DQ218459.1| Abies alba microsatellite Sf83 sequence Length = 204 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Plus Query: 143 cgcctccgcggccgccgcctccgcct 168 ||||||||| |||||||||||||||| Sbjct: 94 cgcctccgccgccgccgcctccgcct 119
>gb|AC087797.5| Oryza sativa chromosome 3 BAC OSJNBb0022E02 genomic sequence, complete sequence Length = 122497 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 143 cgcctccgcggccgccgcctccgcct 168 ||||||||||||||||||| |||||| Sbjct: 97400 cgcctccgcggccgccgccgccgcct 97375
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 143 cgcctccgcggccgccgcctccgcct 168 ||||||||||||||||||| |||||| Sbjct: 28337583 cgcctccgcggccgccgccgccgcct 28337558 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 ccgcggccgccgcctccgcct 168 ||||||||||||||||||||| Sbjct: 26762848 ccgcggccgccgcctccgcct 26762828 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 141 ggcgcctccgcggccgccgcctccg 165 |||||| |||||||||||||||||| Sbjct: 15459589 ggcgccgccgcggccgccgcctccg 15459613
>dbj|AK160386.1| Homo sapiens mRNA for FLJ00420 protein Length = 4512 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 143 cgcctccgcggccgccgcctccgcct 168 ||||||||| |||||||||||||||| Sbjct: 1729 cgcctccgctgccgccgcctccgcct 1704
>dbj|AB014591.1| Homo sapiens mRNA for KIAA0691 protein, partial cds Length = 4133 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 143 cgcctccgcggccgccgcctccgcct 168 ||||||||| |||||||||||||||| Sbjct: 2814 cgcctccgctgccgccgcctccgcct 2789
>gb|AF180474.1|AF180474 Homo sapiens Not3p (NOT3) mRNA, complete cds Length = 2142 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 143 cgcctccgcggccgccgcctccgcct 168 ||||||||| |||||||||||||||| Sbjct: 1266 cgcctccgctgccgccgcctccgcct 1241
>dbj|AK098901.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002B22, full insert sequence Length = 2229 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Plus Query: 143 cgcctccgcggccgccgcctccgcct 168 ||||||||||||||||||| |||||| Sbjct: 52 cgcctccgcggccgccgccgccgcct 77
>dbj|AK067052.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091C21, full insert sequence Length = 2267 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Plus Query: 143 cgcctccgcggccgccgcctccgcct 168 ||||||||||||||||||| |||||| Sbjct: 56 cgcctccgcggccgccgccgccgcct 81
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29 Length = 303450 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 143 cgcctccgcggccgccgcctcc 164 |||||||||||||||||||||| Sbjct: 102250 cgcctccgcggccgccgcctcc 102271
>gb|BC064495.1| Homo sapiens REST corepressor 1, mRNA (cDNA clone IMAGE:5816279), partial cds Length = 1132 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 cgcctccgcggccgccgcctccgcc 167 ||||||||| ||||||||||||||| Sbjct: 298 cgcctccgccgccgccgcctccgcc 322
>gb|BC051003.1| Homo sapiens REST corepressor 1, mRNA (cDNA clone IMAGE:6304446), partial cds Length = 1114 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 cgcctccgcggccgccgcctccgcc 167 ||||||||| ||||||||||||||| Sbjct: 298 cgcctccgccgccgccgcctccgcc 322
>ref|XM_549979.1| Oryza sativa (japonica cultivar-group), mRNA Length = 339 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 ccgcggccgccgcctccgcct 168 ||||||||||||||||||||| Sbjct: 166 ccgcggccgccgcctccgcct 146 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 ccgcggccgccgcctccgcc 167 |||||||||||||||||||| Sbjct: 196 ccgcggccgccgcctccgcc 177
>ref|XM_465904.1| Oryza sativa (japonica cultivar-group), mRNA Length = 753 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 gctcgcctgcgccgcgctcgt 139 ||||||||||||||||||||| Sbjct: 162 gctcgcctgcgccgcgctcgt 182
>ref|NM_184884.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1458 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 ccgcggccgccgcctccgcct 168 ||||||||||||||||||||| Sbjct: 181 ccgcggccgccgcctccgcct 161
>ref|XM_470802.1| Oryza sativa (japonica cultivar-group), mRNA Length = 663 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 141 ggcgcctccgcggccgccgcctccg 165 |||||| |||||||||||||||||| Sbjct: 330 ggcgccgccgcggccgccgcctccg 354
>gb|AC104712.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1333_C12, complete sequence Length = 102029 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 cgcctccgcggccgccgcctccgcc 167 ||||||||||||||||||| ||||| Sbjct: 7819 cgcctccgcggccgccgccgccgcc 7843
>gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1308_D01, complete sequence Length = 117724 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 cgcctccgcggccgccgcctccgcc 167 ||||||||||||||||||| ||||| Sbjct: 105897 cgcctccgcggccgccgccgccgcc 105921
>gb|AY554354.1| Takifugu rubripes claudin 20b (cldn20b) gene, complete cds Length = 3001 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cgcctccgcggccgccgcctccgcc 167 ||||||||| ||||||||||||||| Sbjct: 2350 cgcctccgccgccgccgcctccgcc 2326
>ref|XM_872994.1| PREDICTED: Bos taurus similar to splicing factor p54, transcript variant 16 (LOC513451), mRNA Length = 4197 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cgcctccgcggccgccgcctccgcc 167 ||||||||| ||||||||||||||| Sbjct: 239 cgcctccgccgccgccgcctccgcc 215
>ref|XM_872908.1| PREDICTED: Bos taurus similar to splicing factor p54, transcript variant 15 (LOC513451), mRNA Length = 4290 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cgcctccgcggccgccgcctccgcc 167 ||||||||| ||||||||||||||| Sbjct: 308 cgcctccgccgccgccgcctccgcc 284
>ref|XM_872806.1| PREDICTED: Bos taurus similar to splicing factor p54, transcript variant 14 (LOC513451), mRNA Length = 4137 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cgcctccgcggccgccgcctccgcc 167 ||||||||| ||||||||||||||| Sbjct: 239 cgcctccgccgccgccgcctccgcc 215
>ref|XM_591132.2| PREDICTED: Bos taurus similar to splicing factor p54, transcript variant 1 (LOC513451), mRNA Length = 4188 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cgcctccgcggccgccgcctccgcc 167 ||||||||| ||||||||||||||| Sbjct: 239 cgcctccgccgccgccgcctccgcc 215
>ref|XM_872310.1| PREDICTED: Bos taurus similar to splicing factor p54, transcript variant 10 (LOC513451), mRNA Length = 3864 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cgcctccgcggccgccgcctccgcc 167 ||||||||| ||||||||||||||| Sbjct: 239 cgcctccgccgccgccgcctccgcc 215
>ref|XM_864072.1| PREDICTED: Bos taurus similar to splicing factor p54, transcript variant 2 (LOC513451), mRNA Length = 1268 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cgcctccgcggccgccgcctccgcc 167 ||||||||| ||||||||||||||| Sbjct: 239 cgcctccgccgccgccgcctccgcc 215
>ref|XM_872000.1| PREDICTED: Bos taurus similar to splicing factor p54, transcript variant 8 (LOC513451), mRNA Length = 1772 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cgcctccgcggccgccgcctccgcc 167 ||||||||| ||||||||||||||| Sbjct: 157 cgcctccgccgccgccgcctccgcc 133
>ref|XM_871899.1| PREDICTED: Bos taurus similar to splicing factor p54, transcript variant 7 (LOC513451), mRNA Length = 1667 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cgcctccgcggccgccgcctccgcc 167 ||||||||| ||||||||||||||| Sbjct: 157 cgcctccgccgccgccgcctccgcc 133
>ref|XM_871808.1| PREDICTED: Bos taurus similar to splicing factor p54, transcript variant 6 (LOC513451), mRNA Length = 1012 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cgcctccgcggccgccgcctccgcc 167 ||||||||| ||||||||||||||| Sbjct: 267 cgcctccgccgccgccgcctccgcc 243
>ref|XM_871711.1| PREDICTED: Bos taurus similar to splicing factor p54, transcript variant 5 (LOC513451), mRNA Length = 757 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cgcctccgcggccgccgcctccgcc 167 ||||||||| ||||||||||||||| Sbjct: 258 cgcctccgccgccgccgcctccgcc 234
>ref|XM_871612.1| PREDICTED: Bos taurus similar to splicing factor p54, transcript variant 4 (LOC513451), mRNA Length = 472 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cgcctccgcggccgccgcctccgcc 167 ||||||||| ||||||||||||||| Sbjct: 157 cgcctccgccgccgccgcctccgcc 133
>ref|XM_871534.1| PREDICTED: Bos taurus similar to splicing factor p54, transcript variant 3 (LOC513451), mRNA Length = 1088 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cgcctccgcggccgccgcctccgcc 167 ||||||||| ||||||||||||||| Sbjct: 236 cgcctccgccgccgccgcctccgcc 212
>gb|BC111590.1| Homo sapiens REST corepressor 1, mRNA (cDNA clone MGC:133421 IMAGE:40080558), complete cds, with stop codon, in Gateway system Length = 1503 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 cgcctccgcggccgccgcctccgcc 167 ||||||||| ||||||||||||||| Sbjct: 93 cgcctccgccgccgccgcctccgcc 117
>ref|XM_846425.1| PREDICTED: Canis familiaris similar to Sp5 transcription factor (LOC609211), mRNA Length = 1182 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 cgcctccgcggccgccgcctccgcc 167 ||||||||||||||||||| ||||| Sbjct: 651 cgcctccgcggccgccgccgccgcc 675
>ref|XM_853225.1| PREDICTED: Canis familiaris similar to neurobeachin, transcript variant 4 (LOC477305), mRNA Length = 9688 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cgcctccgcggccgccgcctccgcc 167 ||||||||| ||||||||||||||| Sbjct: 109 cgcctccgccgccgccgcctccgcc 85
>ref|XM_534497.2| PREDICTED: Canis familiaris similar to neurobeachin, transcript variant 1 (LOC477305), mRNA Length = 9775 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cgcctccgcggccgccgcctccgcc 167 ||||||||| ||||||||||||||| Sbjct: 109 cgcctccgccgccgccgcctccgcc 85
>ref|XM_844120.1| PREDICTED: Canis familiaris similar to neurobeachin, transcript variant 2 (LOC477305), mRNA Length = 9784 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cgcctccgcggccgccgcctccgcc 167 ||||||||| ||||||||||||||| Sbjct: 109 cgcctccgccgccgccgcctccgcc 85
>gb|AC091538.3| Sus scrofa clone RP44-26G1, complete sequence Length = 40014 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 cttccttccttcctccacccc 27 ||||||||||||||||||||| Sbjct: 9968 cttccttccttcctccacccc 9948
>gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genomic sequence, complete sequence Length = 164705 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 141 ggcgcctccgcggccgccgcctccg 165 |||||| |||||||||||||||||| Sbjct: 36471 ggcgccgccgcggccgccgcctccg 36447
>gb|AC145509.2| Gasterosteus aculeatus clone CH213-128O17, complete sequence Length = 213989 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 tcgcgcttccttccttcctcc 22 ||||||||||||||||||||| Sbjct: 211272 tcgcgcttccttccttcctcc 211252
>gb|AC073550.14| Homo sapiens BAC clone RP11-457C23 from 7, complete sequence Length = 47362 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 cttccttccttcctccacccc 27 ||||||||||||||||||||| Sbjct: 8696 cttccttccttcctccacccc 8716
>emb|AL645599.14| Mouse DNA sequence from clone RP23-285F4 on chromosome 11 Contains the 5' end of a novel gene, a ribosomal protein L7A (Rpl7a) pseudogene and a CpG island, complete sequence Length = 127405 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 cttccttccttcctccacccc 27 ||||||||||||||||||||| Sbjct: 92744 cttccttccttcctccacccc 92724
>emb|AJ277468.1|OSA277468 Oryza sativa rbbi3-1 gene for putative Bowman Birk trypsin inhibitor Length = 17385 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 148 ccgcggccgccgcctccgcct 168 ||||||||||||||||||||| Sbjct: 1295 ccgcggccgccgcctccgcct 1315 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 ccgcggccgccgcctccgcc 167 |||||||||||||||||||| Sbjct: 1265 ccgcggccgccgcctccgcc 1284
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 83 ccacatggactccgcctccgcctcc 107 |||| |||||||||||||||||||| Sbjct: 2681310 ccacctggactccgcctccgcctcc 2681286
>ref|NM_015156.1| Homo sapiens REST corepressor 1 (RCOR1), mRNA Length = 1449 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 cgcctccgcggccgccgcctccgcc 167 ||||||||| ||||||||||||||| Sbjct: 63 cgcctccgccgccgccgcctccgcc 87
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 148 ccgcggccgccgcctccgcct 168 ||||||||||||||||||||| Sbjct: 713204 ccgcggccgccgcctccgcct 713224
>dbj|AK077446.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730410D03 product:golgi phosphoprotein 3, full insert sequence Length = 1712 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 142 gcgcctccgcggccgccgcctccgc 166 ||||| ||||||||||||||||||| Sbjct: 32 gcgccaccgcggccgccgcctccgc 56
>gb|AC084406.7|AC084406 Oryza sativa chromosome 3 BAC OSJNBa0067E01 genomic sequence, complete sequence Length = 140044 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 148 ccgcggccgccgcctccgcct 168 ||||||||||||||||||||| Sbjct: 86315 ccgcggccgccgcctccgcct 86335
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 ccgcggccgccgcctccgcct 168 ||||||||||||||||||||| Sbjct: 10593668 ccgcggccgccgcctccgcct 10593648 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 cactgccgcgccgtcgcgca 196 |||||||||||||||||||| Sbjct: 13283495 cactgccgcgccgtcgcgca 13283476
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 gctcgcctgcgccgcgctcgt 139 ||||||||||||||||||||| Sbjct: 18237690 gctcgcctgcgccgcgctcgt 18237670 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 143 cgcctccgcggccgccgcctccgc 166 ||||||||||||||||||| |||| Sbjct: 35239351 cgcctccgcggccgccgccgccgc 35239328
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 ccgcggccgccgcctccgcct 168 ||||||||||||||||||||| Sbjct: 21739896 ccgcggccgccgcctccgcct 21739876 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 ccgcggccgccgcctccgcct 168 ||||||||||||||||||||| Sbjct: 1349934 ccgcggccgccgcctccgcct 1349914 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 ccgcggccgccgcctccgcc 167 |||||||||||||||||||| Sbjct: 1349964 ccgcggccgccgcctccgcc 1349945
>gb|AY860818.1| Chlamydomonas reinhardtii putative chloroplast lycopene beta cyclase precursor (LCYB) mRNA, complete cds; nuclear gene for chloroplast product Length = 3272 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 catggactccgcctccgcctc 106 ||||||||||||||||||||| Sbjct: 1397 catggactccgcctccgcctc 1377
>dbj|AP003233.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0037C04 Length = 137879 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 ccgcggccgccgcctccgcct 168 ||||||||||||||||||||| Sbjct: 47985 ccgcggccgccgcctccgcct 47965 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 ccgcggccgccgcctccgcc 167 |||||||||||||||||||| Sbjct: 48015 ccgcggccgccgcctccgcc 47996
>dbj|AP005761.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1066D09 Length = 183999 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 ccgcggccgccgcctccgcct 168 ||||||||||||||||||||| Sbjct: 130375 ccgcggccgccgcctccgcct 130355
>dbj|AP003141.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0002B05 Length = 141275 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 ccgcggccgccgcctccgcct 168 ||||||||||||||||||||| Sbjct: 91947 ccgcggccgccgcctccgcct 91927
>dbj|AP005841.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0052M16 Length = 145423 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 gctcgcctgcgccgcgctcgt 139 ||||||||||||||||||||| Sbjct: 38903 gctcgcctgcgccgcgctcgt 38883
>dbj|AP005066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0047E05 Length = 184323 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 gctcgcctgcgccgcgctcgt 139 ||||||||||||||||||||| Sbjct: 161091 gctcgcctgcgccgcgctcgt 161071
>dbj|AK105270.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-F07, full insert sequence Length = 1528 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 cgcctccgcggccgccgcctccgcc 167 ||||||||||||||||||| ||||| Sbjct: 217 cgcctccgcggccgccgccgccgcc 241
>dbj|AK099933.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119E02, full insert sequence Length = 4743 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 ccgcggccgccgcctccgcct 168 ||||||||||||||||||||| Sbjct: 3156 ccgcggccgccgcctccgcct 3136
>dbj|AK071944.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013087B05, full insert sequence Length = 1533 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 cgcctccgcggccgccgcctccgcc 167 ||||||||||||||||||| ||||| Sbjct: 222 cgcctccgcggccgccgccgccgcc 246
>gb|AF155595.1|AF155595 Homo sapiens CoREST protein (COREST) mRNA, complete cds Length = 1449 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 cgcctccgcggccgccgcctccgcc 167 ||||||||| ||||||||||||||| Sbjct: 63 cgcctccgccgccgccgcctccgcc 87
>emb|AL136293.5|CNS01DVX Human chromosome 14 DNA sequence BAC C-2555C10 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 226035 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 cgcctccgcggccgccgcctccgcc 167 ||||||||| ||||||||||||||| Sbjct: 171698 cgcctccgccgccgccgcctccgcc 171722
>emb|AL806530.6| Mouse DNA sequence from clone RP23-152B24 on chromosome 4, complete sequence Length = 85718 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 cttccttccttcctccacccc 27 ||||||||||||||||||||| Sbjct: 67385 cttccttccttcctccacccc 67405
>ref|XM_468434.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2030 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 cgcctccgcggccgccgcctccgc 166 ||||||||||||||||||| |||| Sbjct: 242 cgcctccgcggccgccgccgccgc 265
>ref|NM_014516.2| Homo sapiens CCR4-NOT transcription complex, subunit 3 (CNOT3), mRNA Length = 2855 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 145 cctccgcggccgccgcctccgcct 168 ||||||| |||||||||||||||| Sbjct: 1525 cctccgctgccgccgcctccgcct 1502
>ref|NM_185573.2| Oryza sativa (japonica cultivar-group), mRNA Length = 2968 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 gccgccgcctccgcctacta 172 |||||||||||||||||||| Sbjct: 137 gccgccgcctccgcctacta 156
>ref|XM_506591.1| PREDICTED Oryza sativa (japonica cultivar-group), P0034A04.129 mRNA Length = 2984 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 gccgccgcctccgcctacta 172 |||||||||||||||||||| Sbjct: 156 gccgccgcctccgcctacta 175
>ref|XM_472965.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1797 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 cctccgcggccgccgcctccgcct 168 ||||||| |||||||||||||||| Sbjct: 173 cctccgccgccgccgcctccgcct 196
>gb|BT018846.1| Zea mays clone EL01N0555A04.d mRNA sequence Length = 1672 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 ccgcggccgccgcctccgcc 167 |||||||||||||||||||| Sbjct: 530 ccgcggccgccgcctccgcc 549
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ctcgcctgcgccgcgctcgt 139 |||||||||||||||||||| Sbjct: 2722112 ctcgcctgcgccgcgctcgt 2722093
>gb|AC150512.3| Bos taurus BAC CH240-319N17 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 167026 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 cttccttccttcctccaccc 26 |||||||||||||||||||| Sbjct: 162 cttccttccttcctccaccc 143
>ref|NM_008989.1| Mus musculus purine rich element binding protein A (Pura), mRNA Length = 1609 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 cgcggccgccgcctccgcct 168 |||||||||||||||||||| Sbjct: 133 cgcggccgccgcctccgcct 152
>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08, complete sequence Length = 142196 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 cgcggccgccgcctccgcct 168 |||||||||||||||||||| Sbjct: 100213 cgcggccgccgcctccgcct 100232
>ref|NM_013286.3| Homo sapiens RNA binding motif protein 15B (RBM15B), mRNA Length = 6620 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 gcctccgcggccgccgcctccgcc 167 |||||| ||||||||||||||||| Sbjct: 28 gcctcctcggccgccgcctccgcc 51
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ctcgcctgcgccgcgctcgt 139 |||||||||||||||||||| Sbjct: 4094600 ctcgcctgcgccgcgctcgt 4094581
>gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088M05, complete sequence Length = 153368 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 ccgcggccgccgcctccgcc 167 |||||||||||||||||||| Sbjct: 149041 ccgcggccgccgcctccgcc 149060
>gb|AC131191.4| Mus musculus BAC clone RP24-464B16 from chromosome 18, complete sequence Length = 136832 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 cgcggccgccgcctccgcct 168 |||||||||||||||||||| Sbjct: 22262 cgcggccgccgcctccgcct 22243
>gb|AC130714.3| Mus musculus BAC clone RP23-367L18 from chromosome 18, complete sequence Length = 193184 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 cgcggccgccgcctccgcct 168 |||||||||||||||||||| Sbjct: 127701 cgcggccgccgcctccgcct 127682
>gb|AY280634.1| Uncultured bacterium cosmid pbiov sequence Length = 37440 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 gtcgcgcagctcagcggcgacatc 212 ||||||| |||||||||||||||| Sbjct: 20833 gtcgcgctgctcagcggcgacatc 20856
>ref|XM_986782.1| PREDICTED: Mus musculus hypothetical protein LOC671403 (LOC671403), mRNA Length = 1257 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 ccgcggccgccgcctccgcc 167 |||||||||||||||||||| Sbjct: 470 ccgcggccgccgcctccgcc 451
>ref|XM_900516.2| PREDICTED: Mus musculus hypothetical LOC628262 (LOC628262), mRNA Length = 1083 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 ccgcggccgccgcctccgcc 167 |||||||||||||||||||| Sbjct: 296 ccgcggccgccgcctccgcc 277
>gb|AC124160.3| Lemur catta clone LB2-260A3, complete sequence Length = 160625 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 cttccttccttcctccaccc 26 |||||||||||||||||||| Sbjct: 78173 cttccttccttcctccaccc 78154
>gb|AC124549.5| Mus musculus BAC clone RP23-284E24 from 13, complete sequence Length = 199240 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 cttccttccttcctccaccccctg 30 |||||||||||||||| ||||||| Sbjct: 101969 cttccttccttcctcccccccctg 101992
>ref|XM_849332.1| PREDICTED: Canis familiaris similar to Fibroblast growth factor-18 precursor (FGF-18) (zFGF5) (LOC611641), mRNA Length = 1533 Score = 40.1 bits (20), Expect = 4.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 140 gggcgcctccgcggccgccgcctccgcc 167 |||||||||||| ||||||||| ||||| Sbjct: 469 gggcgcctccgccgccgccgccgccgcc 442
>gb|AY358811.1| Homo sapiens DNA27863 FGF18 (UNQ420) mRNA, partial cds Length = 1012 Score = 40.1 bits (20), Expect = 4.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 140 gggcgcctccgcggccgccgcctccgcc 167 |||||||||||| ||||||||| ||||| Sbjct: 476 gggcgcctccgccgccgccgccgccgcc 449
>gb|BC100381.1| Mus musculus cDNA clone IMAGE:30475313 Length = 2038 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 gcttccttccttcctccacc 25 |||||||||||||||||||| Sbjct: 1518 gcttccttccttcctccacc 1537
>emb|AL627443.6| Human DNA sequence from clone RP11-459F1 on chromosome 6 Contains a glyceraldehyde-3-phosphate dehydrogenase (GAPD) pseudogene, a novel gene, the T gene for T, brachyury homolog (mouse) and a CpG island, complete sequence Length = 164820 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 cttccttccttcctccaccc 26 |||||||||||||||||||| Sbjct: 144250 cttccttccttcctccaccc 144231
>emb|AL590325.10| Human DNA sequence from clone RP11-85L21 on chromosome Xq25-26.3 Contains a nucleolin (NCL) pseudogene, a zinc finger family pseudogene, three novel genes, the 3' end of a novel gene and a CpG island, complete sequence Length = 84879 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 gcctccgcggccgccgcctccgcc 167 |||||||||||||||||| ||||| Sbjct: 31512 gcctccgcggccgccgccgccgcc 31535
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ctcgcctgcgccgcgctcgt 139 |||||||||||||||||||| Sbjct: 4506625 ctcgcctgcgccgcgctcgt 4506606
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ctcgcctgcgccgcgctcgt 139 |||||||||||||||||||| Sbjct: 3801187 ctcgcctgcgccgcgctcgt 3801168
>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29 Length = 283100 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 gcctccgcggccgccgcctc 163 |||||||||||||||||||| Sbjct: 35231 gcctccgcggccgccgcctc 35250
>emb|AL662946.2|OSJN00139 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991113_30, complete sequence Length = 141128 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 cctccgcggccgccgcctccgcct 168 ||||||| |||||||||||||||| Sbjct: 80952 cctccgccgccgccgcctccgcct 80975
>emb|AL772409.4| Mouse DNA sequence from clone RP23-323L8 on chromosome 11 Contains the 5' end of the Fgf18 gene for fibroblast growth factor 18, the Npm1 gene for nucleophosmin 1, a single-stranded DNA binding protein 1 (Ssbp1) pseudogene, the Tlx3 gene for T-cell leukemia, homeobox 3, a novel gene, the 3' end of the Ranbp17 gene for RAN binding protein 17, a glyceraldehyde-3-phosphate dehydrogenase (Gapd) pseudogene and four CpG islands, complete sequence Length = 161564 Score = 40.1 bits (20), Expect = 4.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 140 gggcgcctccgcggccgccgcctccgcc 167 |||||||||||| ||||||||| ||||| Sbjct: 25363 gggcgcctccgccgccgccgccgccgcc 25390
>gb|BC006245.2| Homo sapiens fibroblast growth factor 18, transcript variant 1, mRNA (cDNA clone MGC:10529 IMAGE:3948893), complete cds Length = 1154 Score = 40.1 bits (20), Expect = 4.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 140 gggcgcctccgcggccgccgcctccgcc 167 |||||||||||| ||||||||| ||||| Sbjct: 76 gggcgcctccgccgccgccgccgccgcc 49
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 gcctccgcggccgccgcctc 163 |||||||||||||||||||| Sbjct: 1561661 gcctccgcggccgccgcctc 1561680
>gb|AC068907.53| Mus musculus strain C57BL/6J clone rp23-347f7 map 13, complete sequence Length = 232472 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 cttccttccttcctccaccccctg 30 |||||||||||||||| ||||||| Sbjct: 24228 cttccttccttcctcccccccctg 24251
>dbj|AK143138.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130114E04 product:unclassifiable, full insert sequence Length = 3701 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 gcttccttccttcctccacc 25 |||||||||||||||||||| Sbjct: 193 gcttccttccttcctccacc 174
>gb|AC020610.6| Homo sapiens 12q BAC RP11-548L17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 92893 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 cttccttcctccaccccctg 30 |||||||||||||||||||| Sbjct: 44687 cttccttcctccaccccctg 44706
>ref|NM_008005.1| Mus musculus fibroblast growth factor 18 (Fgf18), mRNA Length = 1094 Score = 40.1 bits (20), Expect = 4.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 140 gggcgcctccgcggccgccgcctccgcc 167 |||||||||||| ||||||||| ||||| Sbjct: 66 gggcgcctccgccgccgccgccgccgcc 39
>gb|AC093246.3| Homo sapiens chromosome 5 clone RP11-117L6, complete sequence Length = 175154 Score = 40.1 bits (20), Expect = 4.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 140 gggcgcctccgcggccgccgcctccgcc 167 |||||||||||| ||||||||| ||||| Sbjct: 74941 gggcgcctccgccgccgccgccgccgcc 74968
>ref|XM_939086.1| PREDICTED: Homo sapiens hypothetical protein LOC649999 (LOC649999), mRNA Length = 2732 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 gcctccgcggccgccgcctccgcc 167 |||||||||||||||||| ||||| Sbjct: 266 gcctccgcggccgccgccgccgcc 243
>ref|XM_927710.1| PREDICTED: Homo sapiens hypothetical protein LOC644596 (LOC644596), mRNA Length = 2732 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 gcctccgcggccgccgcctccgcc 167 |||||||||||||||||| ||||| Sbjct: 266 gcctccgcggccgccgccgccgcc 243
>ref|NM_003862.1| Homo sapiens fibroblast growth factor 18 (FGF18), mRNA Length = 1546 Score = 40.1 bits (20), Expect = 4.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 140 gggcgcctccgcggccgccgcctccgcc 167 |||||||||||| ||||||||| ||||| Sbjct: 469 gggcgcctccgccgccgccgccgccgcc 442
>emb|BX000454.33| Mouse DNA sequence from clone RP24-276N4 on chromosome 4, complete sequence Length = 59316 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 gcttccttccttcctccacc 25 |||||||||||||||||||| Sbjct: 57170 gcttccttccttcctccacc 57189
>gb|DP000004.1| Lemur catta target 1 genomic scaffold Length = 1399362 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 cttccttccttcctccaccc 26 |||||||||||||||||||| Sbjct: 163396 cttccttccttcctccaccc 163377
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 cctccgcggccgccgcctccgcct 168 ||||||| |||||||||||||||| Sbjct: 24364541 cctccgccgccgccgcctccgcct 24364564
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 gccgccgcctccgcctacta 172 |||||||||||||||||||| Sbjct: 29451959 gccgccgcctccgcctacta 29451978
>gb|AF342810.1|AF342810 Zea mays NOD26-like membrane integral protein ZmNIP2-3 mRNA, complete cds Length = 1300 Score = 40.1 bits (20), Expect = 4.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 140 gggcgcctccgcggccgccgcctccgcc 167 ||||| |||||||||||||||| ||||| Sbjct: 169 gggcggctccgcggccgccgccgccgcc 196
>gb|AC012314.8| Homo sapiens chromosome 19 clone CTD-3093M3, complete sequence Length = 198017 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 145 cctccgcggccgccgcctccgcct 168 ||||||| |||||||||||||||| Sbjct: 125701 cctccgctgccgccgcctccgcct 125678
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 174 ctgcactgccgcgccgtcgcgcag 197 |||| ||||||||||||||||||| Sbjct: 224843 ctgcgctgccgcgccgtcgcgcag 224820
>gb|AC092037.2| Homo sapiens chromosome 3 clone RP11-89F17, complete sequence Length = 168499 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 gcctccgcggccgccgcctccgcc 167 |||||| ||||||||||||||||| Sbjct: 13202 gcctcctcggccgccgcctccgcc 13225
>dbj|AP005449.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0427E01 Length = 146395 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 cactgccgcgccgtcgcgca 196 |||||||||||||||||||| Sbjct: 45305 cactgccgcgccgtcgcgca 45286
>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0474F11 Length = 139544 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 143 cgcctccgcggccgccgcctccgc 166 ||||||||||||||||||| |||| Sbjct: 51401 cgcctccgcggccgccgccgccgc 51378
>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1202_E07 Length = 145014 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 143 cgcctccgcggccgccgcctccgc 166 ||||||||||||||||||| |||| Sbjct: 134707 cgcctccgcggccgccgccgccgc 134684
>emb|AJ337788.1|HSA337788 Homo sapiens genomic sequence surrounding NotI site, clone NL1-FL14C Length = 676 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 gcctccgcggccgccgcctccgcc 167 |||||| ||||||||||||||||| Sbjct: 477 gcctcctcggccgccgcctccgcc 454
>dbj|AK104323.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-G08, full insert sequence Length = 1916 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 cgcggccgccgcctccgcct 168 |||||||||||||||||||| Sbjct: 96 cgcggccgccgcctccgcct 77
>dbj|AK102007.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033079N23, full insert sequence Length = 2983 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 gccgccgcctccgcctacta 172 |||||||||||||||||||| Sbjct: 155 gccgccgcctccgcctacta 174
>dbj|AK070388.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054G02, full insert sequence Length = 2179 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 cgcggccgccgcctccgcct 168 |||||||||||||||||||| Sbjct: 140 cgcggccgccgcctccgcct 121
>dbj|AK067708.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118H02, full insert sequence Length = 2031 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 cgcctccgcggccgccgcctccgc 166 ||||||||||||||||||| |||| Sbjct: 242 cgcctccgcggccgccgccgccgc 265
>dbj|AK067627.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013113I18, full insert sequence Length = 2169 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 cgcggccgccgcctccgcct 168 |||||||||||||||||||| Sbjct: 136 cgcggccgccgcctccgcct 117
>gb|BC027170.1| Mus musculus expressed sequence C79267, mRNA (cDNA clone MGC:36549 IMAGE:4952810), complete cds Length = 1600 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 gcttccttccttcctccacc 25 |||||||||||||||||||| Sbjct: 1044 gcttccttccttcctccacc 1063
>dbj|AK064333.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-G05, full insert sequence Length = 2968 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 gccgccgcctccgcctacta 172 |||||||||||||||||||| Sbjct: 137 gccgccgcctccgcctacta 156
>gb|AC121091.10| Mus musculus chromosome 1, clone RP24-191N24, complete sequence Length = 150109 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 ccgcggccgccgcctccgcc 167 |||||||||||||||||||| Sbjct: 73880 ccgcggccgccgcctccgcc 73899
>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0034A04 Length = 151263 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 gccgccgcctccgcctacta 172 |||||||||||||||||||| Sbjct: 114881 gccgccgcctccgcctacta 114900
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 142 gcgcctccgcggccgccgcctccg 165 ||||| |||||||||||||||||| Sbjct: 2849038 gcgccgccgcggccgccgcctccg 2849061
>gb|AF075292.1|AF075292 Homo sapiens fibroblast growth factor 18 (FGF18) mRNA, complete cds Length = 1546 Score = 40.1 bits (20), Expect = 4.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 140 gggcgcctccgcggccgccgcctccgcc 167 |||||||||||| ||||||||| ||||| Sbjct: 469 gggcgcctccgccgccgccgccgccgcc 442
>gb|AF075291.1|AF075291 Mus musculus fibroblast growth factor 18 (Fgf18) mRNA, complete cds Length = 1094 Score = 40.1 bits (20), Expect = 4.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 140 gggcgcctccgcggccgccgcctccgcc 167 |||||||||||| ||||||||| ||||| Sbjct: 66 gggcgcctccgccgccgccgccgccgcc 39
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 gccgcgccgtcgcgcagctc 200 |||||||||||||||||||| Sbjct: 3294008 gccgcgccgtcgcgcagctc 3294027
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 4.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 141 ggcgcctccgcggccgccgcctccgcct 168 ||||||||| ||||| |||||||||||| Sbjct: 134686 ggcgcctcctcggcccccgcctccgcct 134659
>ref|NM_183148.1| Mus musculus expressed sequence C79267 (C79267), mRNA Length = 1600 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 gcttccttccttcctccacc 25 |||||||||||||||||||| Sbjct: 1044 gcttccttccttcctccacc 1063
>gb|U02098.1|MMU02098 Mus musculus Pur-alpha mRNA, complete cds Length = 1609 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 cgcggccgccgcctccgcct 168 |||||||||||||||||||| Sbjct: 133 cgcggccgccgcctccgcct 152
>emb|AL133647.1|HSM801420 Homo sapiens mRNA; cDNA DKFZp434L061 (from clone DKFZp434L061); partial cds Length = 2787 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 145 cctccgcggccgccgcctccgcct 168 ||||||| |||||||||||||||| Sbjct: 1025 cctccgctgccgccgcctccgcct 1002 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,886,032 Number of Sequences: 3902068 Number of extensions: 2886032 Number of successful extensions: 595398 Number of sequences better than 10.0: 142 Number of HSP's better than 10.0 without gapping: 148 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 592188 Number of HSP's gapped (non-prelim): 3208 length of query: 306 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 284 effective length of database: 17,147,199,772 effective search space: 4869804735248 effective search space used: 4869804735248 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
