ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl47e04 |
|---|---|
| Clone Library Name | barley_pub |
>YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'region of gyrA and| gyrB (ORF 3) Length = 437 Score = 36.6 bits (83), Expect = 0.031 Identities = 35/110 (31%), Positives = 44/110 (40%), Gaps = 5/110 (4%) Frame = +3 Query: 72 SRSPHRSRCPAPRRPGRR--DEEPLPATRRPLRIRAR-PPHARS--GSVPGGGRDHHTGD 236 SR HR RP R DE+ R P R R PP AR PG G HH Sbjct: 180 SRGTHRRHLRQAPRPAVRGPDEDQAREFRGPRHRRERHPPTARDVLRGEPGHGDGHHLEG 239 Query: 237 PDAQARPRRLFLGVLALQPQAPEQVLDGIGHADRVR*PGGLEVKGLHQRG 386 + RP+ G A PQ ++ G A + P L V+ +H+ G Sbjct: 240 RRGRPRPQGREAGRGAHPPQVRARIYLAAGEARGLPEPRPLGVRTVHRGG 289
>ICP0_EHV1V (P84445) Trans-acting transcriptional protein ICP0 (Infected cell| protein 0) Length = 532 Score = 35.8 bits (81), Expect = 0.053 Identities = 32/86 (37%), Positives = 37/86 (43%), Gaps = 11/86 (12%) Frame = +3 Query: 33 SDEPLIRNSKTLVSRS----PHRSRCPAP---RRPGRRDEEPLPATRRPLRIRARPPHAR 191 SDE NS R P R+R P RR GRR P PA+RR R+R R P R Sbjct: 239 SDETSTDNSSAQAPRQEDSRPARARPGPPTRGRRRGRRPAAPGPASRRSARLRRRQP--R 296 Query: 192 SGSVPGGGRDHH----TGDPDAQARP 257 + S GG + T D D P Sbjct: 297 TNSRTNGGDNGEIIDLTLDSDGDTEP 322
>ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0| Length = 532 Score = 35.8 bits (81), Expect = 0.053 Identities = 32/86 (37%), Positives = 37/86 (43%), Gaps = 11/86 (12%) Frame = +3 Query: 33 SDEPLIRNSKTLVSRS----PHRSRCPAP---RRPGRRDEEPLPATRRPLRIRARPPHAR 191 SDE NS R P R+R P RR GRR P PA+RR R+R R P R Sbjct: 239 SDETSTDNSSAQAPRQEDSRPARARPGPPTRGRRRGRRPAAPGPASRRSARLRRRQP--R 296 Query: 192 SGSVPGGGRDHH----TGDPDAQARP 257 + S GG + T D D P Sbjct: 297 TNSRTNGGDNGEIIDLTLDSDGDTEP 322
>CAC1B_HUMAN (Q00975) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2339 Score = 35.0 bits (79), Expect = 0.090 Identities = 28/70 (40%), Positives = 34/70 (48%), Gaps = 11/70 (15%) Frame = +3 Query: 87 RSRCPAPR----RPGRRDEEPLPATRRPLRIRARPPHARS----GSVPGGGR-DHHTGDP 239 + R AP+ PG R+E P P R + A PP ARS G P GGR H G P Sbjct: 866 QDRAEAPKAESGEPGAREERPRPH-RSHSKEAAGPPEARSERGRGPGPEGGRRHHRRGSP 924 Query: 240 D--AQARPRR 263 + A+ PRR Sbjct: 925 EEAAEREPRR 934
>ADA2A_CAVPO (Q60474) Alpha-2A adrenergic receptor (Alpha-2A adrenoceptor)| (Alpha-2A adrenoreceptor) (Alpha-2AAR) Length = 450 Score = 34.7 bits (78), Expect = 0.12 Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Frame = -2 Query: 386 PTLMESLDFEPTRSSNSVRMTDSVQNLLWGLRLKSE-NTEEEPPGPSLRVRVPGVVVSAA 210 P E+LD E + SS + GLR KS+ + PG SL R PG S Sbjct: 285 PRDAEALDLEESSSSEHAERPPGARRPERGLRAKSKARASQVKPGDSLPRRAPGAAGSGT 344 Query: 209 SGDG 198 SG G Sbjct: 345 SGSG 348
>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)| (Trio-associated repeat on actin) Length = 2365 Score = 32.7 bits (73), Expect = 0.45 Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 9/75 (12%) Frame = -3 Query: 394 SEAPR*WSPLTSSPPGHRTLSA*PIPSRTCSGA*G*RARTP-RKSRRGRACASGSP---- 230 +E P WSP P G R L P+P RT ARTP R+ R R SG Sbjct: 1371 AEPPHPWSP-EKRPEGDRQLQGSPLPPRT-------SARTPERELRTQRPLESGQAGPRQ 1422 Query: 229 ---VWWSR-PPPGTE 197 VW S+ PPG++ Sbjct: 1423 PLGVWQSQEEPPGSQ 1437
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 32.7 bits (73), Expect = 0.45 Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 1/73 (1%) Frame = +3 Query: 99 PAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDPDAQARPRRLFLGV 278 PAP PG P+PA RP+ + GSVP G P P R Sbjct: 525 PAPGYPGMNARGPVPAQGRPMMM--------PGSVPSAGPAEAEAVPAVPGMPERFTAAD 576 Query: 279 LALQP-QAPEQVL 314 LA P ++ +QVL Sbjct: 577 LAAVPEESRKQVL 589
>KIF1C_MOUSE (O35071) Kinesin-like protein KIF1C| Length = 1100 Score = 32.3 bits (72), Expect = 0.58 Identities = 21/56 (37%), Positives = 25/56 (44%) Frame = +3 Query: 99 PAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDPDAQARPRRL 266 PAP+ P P P RRP R RP +R S+ GG R G Q P+ L Sbjct: 999 PAPQPPEEVTVPPAPPNRRPPSPR-RPHRSRRNSLDGGSRSR--GGGSTQPEPQHL 1051
>GUAAB_METMA (Q8PXK0) GMP synthase [glutamine-hydrolyzing] subunit B (EC| 6.3.5.2) (GMP synthetase) Length = 305 Score = 31.6 bits (70), Expect = 0.99 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = -2 Query: 323 DSVQNLLWGLRLKSENTEEEP-PGPSLRVRVPGVV 222 D V+ + W L+L E E P PGP L VRV G V Sbjct: 166 DEVREVAWALQLPDEICERMPFPGPGLAVRVLGEV 200
>PKAA_STRCO (P54739) Serine/threonine protein kinase pkaA (EC 2.7.11.1)| Length = 543 Score = 31.6 bits (70), Expect = 0.99 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%) Frame = +3 Query: 75 RSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGS---VPGGG 215 + P R P P++P R P P ++P R RPP RS + +PG G Sbjct: 436 QQPQRYATPQPQQPQRYAPPPAPEPQQPRR-EPRPPRQRSANPMRIPGLG 484
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 31.6 bits (70), Expect = 0.99 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Frame = +3 Query: 42 PLIRNSKTLVSRSP---HRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGS 200 P+ ++ + S SP R R P+P P RR P P RR R + PP RS S Sbjct: 553 PVTKSGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRR--RTPSPPPRRRSPS 606
>RSP2_CAEEL (Q23120) Probable splicing factor, arginine/serine-rich 2| (RNA-binding protein srp-4) (CeSRp40) Length = 281 Score = 31.6 bits (70), Expect = 0.99 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 7/71 (9%) Frame = +3 Query: 72 SRSPHRSRCPAPRR--PG-----RRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHT 230 SRSP RSR P RR PG R+ P R R R+ ++S S GG R Sbjct: 200 SRSPTRSRSPPARRRSPGSDRSDRKSRSASPKKRSDKRARS---ESKSRSRSGGRRSRSN 256 Query: 231 GDPDAQARPRR 263 P+ P++ Sbjct: 257 SPPNRSPSPKK 267
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 31.2 bits (69), Expect = 1.3 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 5/66 (7%) Frame = +3 Query: 9 AR*TETVASDEPLIRNSKTLVSRSPHRSRCPAPRRPG-----RRDEEPLPATRRPLRIRA 173 +R T S +P R+S + R+P S P P R G +R + P P+T RP+R + Sbjct: 667 SRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPST-RPIRRVS 725 Query: 174 RPPHAR 191 R P + Sbjct: 726 RTPEPK 731 Score = 29.6 bits (65), Expect = 3.8 Identities = 17/38 (44%), Positives = 19/38 (50%) Frame = +3 Query: 87 RSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGS 200 R R P+P P RR P P RR R + PP RS S Sbjct: 557 RRRSPSPAPPPRRRRTPTPPPRR--RTPSPPPRRRSPS 592
>K1849_HUMAN (Q96JH8) Protein KIAA1849| Length = 1073 Score = 30.8 bits (68), Expect = 1.7 Identities = 24/82 (29%), Positives = 33/82 (40%) Frame = +3 Query: 60 KTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDP 239 +TL R ++ P R+PGR + P PP G PG +G P Sbjct: 865 RTLPLRGAPWAQAPPGRQPGRGGSQAGPP-HTDSSCLLTPPSTPLGPEPGDPDWPESGGP 923 Query: 240 DAQARPRRLFLGVLALQPQAPE 305 +A P R G+ L+ APE Sbjct: 924 CGKALPERQRNGLSGLRGAAPE 945
>IF2_PROAC (Q6A7M5) Translation initiation factor IF-2| Length = 964 Score = 30.4 bits (67), Expect = 2.2 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Frame = +3 Query: 87 RSRCPAPR-RPGRRDEEPLPATR---RPLRIRARPPHARSGSVPGGGRDHHTGDP 239 + PAP+ +PG + P P R RP P AR G PG GR TG P Sbjct: 158 KPHAPAPKPKPGAPSKSPKPGARPGPRPGGSAGLPSAARPGPRPGAGR--RTGAP 210
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 30.4 bits (67), Expect = 2.2 Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 7/70 (10%) Frame = +3 Query: 72 SRSPHRSRCPAPRR-------PGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHT 230 SRSP SR +PRR P RD P R R R+R P R P R Sbjct: 123 SRSPRYSRSRSPRRSRSRTRSPPSRDRRDSPDRRDNSRSRSRSPPPREDGSPKERRSRSR 182 Query: 231 GDPDAQARPR 260 + +R R Sbjct: 183 SASRSPSRSR 192
>PDE3A_HUMAN (Q14432) cGMP-inhibited 3',5'-cyclic phosphodiesterase A (EC| 3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase A) (CGI-PDE A) Length = 1141 Score = 30.4 bits (67), Expect = 2.2 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 5/49 (10%) Frame = +3 Query: 162 RIRARPPHARSGSVPGGGRD-HHTGDPDAQARPR----RLFLGVLALQP 293 R+R +P H+ P GRD HH DP A PR R G L LQP Sbjct: 9 RVRDKPVHSGVSQAPTAGRDCHHRADP---ASPRDSGCRGCWGDLVLQP 54
>CUTI_PHYCP (P41754) Putative cutinase (EC 3.1.1.74) (Cutin hydrolase)| Length = 210 Score = 30.4 bits (67), Expect = 2.2 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 5/54 (9%) Frame = -3 Query: 370 PLTSSPPGHRTLSA*PIPSRTCSG-----A*G*RARTPRKSRRGRACASGSPVW 224 PL PG R++ + IPS CS A R R+ R+ + G A AS S W Sbjct: 31 PLKRDEPGSRSMRSTFIPSSQCSNLSSATASSSRRRSCRRYQHGEAVASSSTRW 84
>RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-rich 7 (p54)| Length = 452 Score = 30.4 bits (67), Expect = 2.2 Identities = 19/41 (46%), Positives = 22/41 (53%) Frame = +3 Query: 72 SRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARS 194 SRSP R R P+PRR RRD R R R+R +RS Sbjct: 275 SRSPRRRRSPSPRR--RRDSRDRDRDRDRDRRRSRDRRSRS 313
>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic| chromosome-associated protein) (MCAP) Length = 1400 Score = 30.0 bits (66), Expect = 2.9 Identities = 21/77 (27%), Positives = 31/77 (40%) Frame = +3 Query: 99 PAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDPDAQARPRRLFLGV 278 P P++P ++P P + + PP S+P T + P + V Sbjct: 753 PVPQQPPPPPQQPPPPPPPQQQQQQPPPPPPPPSMP-----QQTAPAMKSSPPPFITAQV 807 Query: 279 LALQPQAPEQVLDGIGH 329 L+PQ P V D IGH Sbjct: 808 PVLEPQLPGSVFDPIGH 824
>NPAS3_MOUSE (Q9QZQ0) Neuronal PAS domain protein 3 (Neuronal PAS3) (Member of| PAS protein 6) (MOP6) Length = 925 Score = 30.0 bits (66), Expect = 2.9 Identities = 17/51 (33%), Positives = 22/51 (43%) Frame = +3 Query: 105 PRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDPDAQARP 257 P R R+E P T+ P P + GS+ GGG H PD+ P Sbjct: 673 PNREISRNESPYSMTKPPTSEHFPSPQGQGGSIGGGGA-LHVAIPDSVLTP 722
>SYNJ1_BOVIN (O18964) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) (p150) (Fragment) Length = 1324 Score = 30.0 bits (66), Expect = 2.9 Identities = 25/66 (37%), Positives = 26/66 (39%) Frame = +3 Query: 99 PAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDPDAQARPRRLFLGV 278 P P RP P P R P P ARS P R+ AQ RPRR LG Sbjct: 1108 PPPPRPVAPPARPAPPQRPP-----PPSGARS---PAPARERVWSTRKAQERPRRDNLGG 1159 Query: 279 LALQPQ 296 L PQ Sbjct: 1160 SQLPPQ 1165
>XYLT1_PANTR (Q5QQ57) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyltransferase I)| (Peptide O-xylosyltransferase 1) Length = 945 Score = 29.6 bits (65), Expect = 3.8 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Frame = +3 Query: 129 EEPLPATRRPLR-IRARPPHARSGSVPGGGRDHHTGDPDAQAR 254 E+P PA RR R + A P AR G GGG P A+AR Sbjct: 55 EQPPPAPRRERRDLPAEPAAARGGGGGGGGCGGGGRGPQARAR 97
>IF2_NITWN (Q3SWP9) Translation initiation factor IF-2| Length = 871 Score = 29.6 bits (65), Expect = 3.8 Identities = 23/71 (32%), Positives = 31/71 (43%) Frame = +3 Query: 87 RSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDPDAQARPRRL 266 ++ A RR G+ + +P PA RA PP AR +V G D P RP Sbjct: 167 KAEIEAKRRFGQTESKPAPAKTTTTTTRAAPP-ARPAAVAADGSDEDEA-PRLVRRPGGP 224 Query: 267 FLGVLALQPQA 299 V+A +P A Sbjct: 225 ARPVIAPKPAA 235
>VE2_HPV1A (P03118) Regulatory protein E2| Length = 401 Score = 29.6 bits (65), Expect = 3.8 Identities = 28/76 (36%), Positives = 33/76 (43%), Gaps = 4/76 (5%) Frame = +3 Query: 51 RNSKTLVSRSPH-RSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGG---GR 218 R KT V R P+ R R +PR GRR+ E P +R P GSVP G Sbjct: 249 RQQKTPVRRRPYGRRRSRSPRGGGRREGESTP-SRTP------------GSVPSARDVGS 295 Query: 219 DHHTGDPDAQARPRRL 266 H T +R RRL Sbjct: 296 IHTTPQKGHSSRLRRL 311
>HMDH_GIBFU (Q12577) 3-hydroxy-3-methylglutaryl-coenzyme A reductase (EC| 1.1.1.34) (HMG-CoA reductase) Length = 976 Score = 29.6 bits (65), Expect = 3.8 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 2/77 (2%) Frame = -2 Query: 374 ESLDFEPTRSSNSVRMTDSVQNLLWGLRLKSENTEEEPPGPSLRVRVPGVVVSAASGDGT 195 E L R +N ++ L E T+EE S+R ++PG + GD T Sbjct: 484 EGLHMTKARPANLPNRSNEELEKLLSENALREMTDEEVISLSMRGKIPGYALEKTLGDFT 543 Query: 194 RASMRRTS--ADTKGAA 150 RA R S A K AA Sbjct: 544 RAVKIRRSIIARNKAAA 560
>CD2A2_HUMAN (Q8N726) Cyclin-dependent kinase inhibitor 2A, isoform 4 (p14ARF)| (p19ARF) Length = 173 Score = 29.3 bits (64), Expect = 4.9 Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 9/85 (10%) Frame = +3 Query: 66 LVSRSPHRSRCPAPRRPGRRDEE-----PLPATRRPLRIRARPPHA---RSGSVPGGGRD 221 ++ RS + P PRRPG D + A RR ++R RP H+ R+ PGG Sbjct: 89 MLLRSQRLGQQPLPRRPGHDDGQRPSGGAAAAPRRGAQLR-RPRHSHPTRARRCPGGLPG 147 Query: 222 HHTG-DPDAQARPRRLFLGVLALQP 293 H G P A R LG A P Sbjct: 148 HAGGAAPGRGAAGRARCLGPSARGP 172
>PAPOB_HUMAN (Q9NRJ5) Poly(A) polymerase beta (EC 2.7.7.19) (PAP beta)| (Polynucleotide adenylyltransferase beta) (Testis-specific poly(A) polymerase) Length = 636 Score = 29.3 bits (64), Expect = 4.9 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = -2 Query: 416 TLPALVKFRSPTLMESLDFEPTRSSNSVRMTDSVQNLL 303 T+P + R +L+++LD RS N R+TD + +L+ Sbjct: 177 TIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLV 214
>PAPO1_XENLA (P51004) Poly(A) polymerase alpha-A (EC 2.7.7.19) (PAP)| (Polynucleotide adenylyltransferase) (Fragment) Length = 715 Score = 29.3 bits (64), Expect = 4.9 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = -2 Query: 416 TLPALVKFRSPTLMESLDFEPTRSSNSVRMTDSVQNLL 303 T+P + R +L+++LD RS N R+TD + +L+ Sbjct: 159 TIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLV 196
>PAPO3_XENLA (P51006) Poly(A) polymerase type 3 (EC 2.7.7.19) (PAP)| (Polynucleotide adenylyltransferase) (Fragment) Length = 400 Score = 29.3 bits (64), Expect = 4.9 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = -2 Query: 416 TLPALVKFRSPTLMESLDFEPTRSSNSVRMTDSVQNLL 303 T+P + R +L+++LD RS N R+TD + +L+ Sbjct: 174 TIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLV 211
>PRTM_BACSK (Q99405) M-protease precursor (EC 3.4.21.-)| Length = 380 Score = 29.3 bits (64), Expect = 4.9 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 2/98 (2%) Frame = -2 Query: 422 FATLPALVKFRSPTLMESLDFEPTRS--SNSVRMTDSVQNLLWGLRLKSENTEEEPPGPS 249 F T+P L SP +++L+ +PT S +T Q++ WG+ Sbjct: 75 FETIPVLSVELSPEDVDALELDPTISYIEEDAEVTTMAQSVPWGIS-------------- 120 Query: 248 LRVRVPGVVVSAASGDGTRASMRRTSADTKGAAGSRKG 135 RV+ P +G G + ++ T T R G Sbjct: 121 -RVQAPAAHNRGLTGSGVKVAVLDTGISTHPDLNIRGG 157
>KIF1C_HUMAN (O43896) Kinesin-like protein KIF1C| Length = 1103 Score = 29.3 bits (64), Expect = 4.9 Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Frame = +3 Query: 99 PAPRRPGRRDEEPLPAT--RRPLRIRARPPHARSGSVPGGGRDHHTGDPDAQARPRRLFL 272 P P +P + P PAT RRP R R H R S+ GGGR G AQ P+ Sbjct: 1000 PTPLQPPE-EVTPHPATPARRPPSPR-RSHHPRRNSLDGGGRSRGAG--SAQPEPQHFQP 1055 Query: 273 GVLALQPQAPE 305 PQ P+ Sbjct: 1056 KKHNSYPQPPQ 1066
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 29.3 bits (64), Expect = 4.9 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%) Frame = +3 Query: 51 RNSKTLVSRSP---HRSRCPAPRRPGRRDEEPLPATRR 155 R+ SRSP +SR P+PRR R PLP+ ++ Sbjct: 243 RSPAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLPSVQK 280
>PAPOA_HUMAN (P51003) Poly(A) polymerase alpha (EC 2.7.7.19) (PAP)| (Polynucleotide adenylyltransferase alpha) Length = 744 Score = 29.3 bits (64), Expect = 4.9 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = -2 Query: 416 TLPALVKFRSPTLMESLDFEPTRSSNSVRMTDSVQNLL 303 T+P + R +L+++LD RS N R+TD + +L+ Sbjct: 176 TIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLV 213
>PAPOA_MOUSE (Q61183) Poly(A) polymerase alpha (EC 2.7.7.19) (PAP)| (Polynucleotide adenylyltransferase) Length = 738 Score = 29.3 bits (64), Expect = 4.9 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = -2 Query: 416 TLPALVKFRSPTLMESLDFEPTRSSNSVRMTDSVQNLL 303 T+P + R +L+++LD RS N R+TD + +L+ Sbjct: 176 TIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLV 213
>PAPOA_BOVIN (P25500) Poly(A) polymerase alpha (EC 2.7.7.19) (PAP)| (Polynucleotide adenylyltransferase alpha) Length = 738 Score = 29.3 bits (64), Expect = 4.9 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = -2 Query: 416 TLPALVKFRSPTLMESLDFEPTRSSNSVRMTDSVQNLL 303 T+P + R +L+++LD RS N R+TD + +L+ Sbjct: 176 TIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLV 213
>PAPOB_MOUSE (Q9WVP6) Poly(A) polymerase beta (EC 2.7.7.19) (PAP beta)| (Polynucleotide adenylyltransferase beta) (Testis-specific poly(A) polymerase) Length = 641 Score = 29.3 bits (64), Expect = 4.9 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = -2 Query: 416 TLPALVKFRSPTLMESLDFEPTRSSNSVRMTDSVQNLL 303 T+P + R +L+++LD RS N R+TD + +L+ Sbjct: 177 TIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLV 214
>FOG1_MOUSE (O35615) Zinc finger protein ZFPM1 (Zinc finger protein multitype| 1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1) Length = 995 Score = 29.3 bits (64), Expect = 4.9 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Frame = +3 Query: 51 RNSKTLVSRSPHRSRCPAPRRPGRR--DEEPLPATRRPLRIRARPPHARSGSVPGGG 215 R K + P +R P PG + P P + P+R++ GS PG G Sbjct: 466 RTIKVEAAEEPEATRASGPGEPGPQAPSRTPSPHSPNPVRVKTELSSPTPGSSPGPG 522
>NOS3_PIG (Q28969) Nitric-oxide synthase, endothelial (EC 1.14.13.39)| (EC-NOS) (NOS type III) (NOSIII) (Endothelial NOS) (eNOS) (Constitutive NOS) (cNOS) Length = 1204 Score = 24.6 bits (52), Expect(2) = 5.9 Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 4/74 (5%) Frame = +3 Query: 78 SPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHT----GDPDA 245 +P SR PAP P + P P + R P R + G + T D Sbjct: 34 APEPSRAPAPATPHAPEHSPAPNSPTLTRPPEGPKFPRVKNWEVGSITYDTLCAQSQQDG 93 Query: 246 QARPRRLFLGVLAL 287 PRR LG L L Sbjct: 94 PCTPRRC-LGSLVL 106 Score = 22.7 bits (47), Expect(2) = 5.9 Identities = 11/33 (33%), Positives = 20/33 (60%) Frame = +1 Query: 358 SKSRDSINVGLLNFTRAGNVANYMNLAEVDSNI 456 S++RD IN + R+G+ A+ L EV++ + Sbjct: 126 SQARDFINQYYSSIKRSGSQAHEERLQEVEAEV 158
>YA4E_SCHPO (Q09731) Hypothetical WD-repeat protein C31A2.14 in chromosome I| Length = 962 Score = 28.9 bits (63), Expect = 6.4 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = +3 Query: 69 VSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARP 179 V RS + + A R R+ +P+ PLRIR+RP Sbjct: 540 VVRSEAKKQIEAQREEARKGNVNMPSALSPLRIRSRP 576
>PTPRN_BOVIN (P56722) Receptor-type tyrosine-protein phosphatase-like N| precursor (R-PTP-N) (Islet cell autoantigen 512) (ICA512) Length = 979 Score = 28.9 bits (63), Expect = 6.4 Identities = 29/98 (29%), Positives = 36/98 (36%), Gaps = 4/98 (4%) Frame = +3 Query: 114 PGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDPDAQARPRRLF----LGVL 281 PG +PLP P + G+ PG H GDP P +LF L L Sbjct: 227 PGMVSVDPLPKAEAPAFLSRAGSKGMFGAHPG----HSYGDPPGPP-PAQLFQESELFYL 281 Query: 282 ALQPQAPEQVLDGIGHADRVR*PGGLEVKGLHQRGASE 395 A + Q P + A R+ PGG G G E Sbjct: 282 AQESQVPSRT-----RAPRLPEPGGSSRAGDSSEGYEE 314
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 28.9 bits (63), Expect = 6.4 Identities = 18/48 (37%), Positives = 19/48 (39%) Frame = +3 Query: 75 RSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGR 218 R RSR +PRR P P R P R PP R PG R Sbjct: 299 RHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPGRRR 346
>FA47A_HUMAN (Q5JRC9) Protein FAM47A| Length = 778 Score = 28.9 bits (63), Expect = 6.4 Identities = 21/57 (36%), Positives = 27/57 (47%) Frame = +3 Query: 39 EPLIRNSKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPG 209 EP ++ +T VS PH P RR +P P TRR +R+ PP R S G Sbjct: 465 EPCLQPPETQVSH-PHPEH-PKTRRRSSLHSQP-PKTRRTSSLRSEPPKTRRTSSLG 518
>RPOA_PRRSB (Q8B912) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP Length = 3963 Score = 28.9 bits (63), Expect = 6.4 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = +3 Query: 126 DEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDP 239 +++P+PA RR +R P +VP G D G P Sbjct: 832 EDKPVPAPRRKVRSGCGSPVLMGDNVPNGSEDLTVGGP 869
>VGLE_CHV1 (P30816) Glycoprotein E homolog (Fragment)| Length = 64 Score = 28.9 bits (63), Expect = 6.4 Identities = 18/46 (39%), Positives = 19/46 (41%) Frame = +3 Query: 117 GRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDPDAQAR 254 G RDE + R R R RPP GS GR G A AR Sbjct: 11 GDRDESEYDSDRIASRARIRPPSEAPGSRSSPGRRRTRGHRGAAAR 56
>SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precursor (Scavenger| receptor expressed by endothelial cells 2 protein) (SREC-II) (SRECRP-1) Length = 866 Score = 28.9 bits (63), Expect = 6.4 Identities = 18/45 (40%), Positives = 24/45 (53%) Frame = +3 Query: 42 PLIRNSKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRAR 176 P +++ T+ SP R+R P PR PG +E A P R RAR Sbjct: 701 PSDKSAHTVEHGSP-RTRDPTPRPPGLPEEATALAAPSPPRARAR 744
>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)| Length = 1362 Score = 28.9 bits (63), Expect = 6.4 Identities = 22/77 (28%), Positives = 31/77 (40%) Frame = +3 Query: 99 PAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDPDAQARPRRLFLGV 278 P P++P ++P P P + + PP S+P P P + V Sbjct: 752 PVPQQPPPPPQQP-PPPPPPQQQQQPPPPPPPPSMPQQAAPAMKSSP-----PPFIATQV 805 Query: 279 LALQPQAPEQVLDGIGH 329 L+PQ P V D IGH Sbjct: 806 PVLEPQLPGSVFDPIGH 822
>MMP16_RAT (O35548) Matrix metalloproteinase-16 precursor (EC 3.4.24.-)| (MMP-16) (Membrane-type matrix metalloproteinase 3) (MT-MMP 3) (MTMMP3) (Membrane-type-3 matrix metalloproteinase) (MT3-MMP) (MT3MMP) Length = 607 Score = 28.9 bits (63), Expect = 6.4 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = +3 Query: 57 SKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARP 179 ++ L + PHRS PA R R + P P T RP A+P Sbjct: 300 TRPLPTVPPHRSVPPADPRKNDRPKPPRPPTGRPSYPGAKP 340
>MMP16_HUMAN (P51512) Matrix metalloproteinase-16 precursor (EC 3.4.24.-)| (MMP-16) (Membrane-type matrix metalloproteinase 3) (MT-MMP 3) (MTMMP3) (Membrane-type-3 matrix metalloproteinase) (MT3-MMP) (MT3MMP) (MMP-X2) Length = 607 Score = 28.9 bits (63), Expect = 6.4 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = +3 Query: 57 SKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARP 179 ++ L + PHRS PA R R + P P T RP A+P Sbjct: 300 TRPLPTVPPHRSIPPADPRKNDRPKPPRPPTGRPSYPGAKP 340
>CABP4_BOVIN (Q8HZJ4) Calcium-binding protein 4 (CaBP4)| Length = 279 Score = 28.9 bits (63), Expect = 6.4 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Frame = -2 Query: 260 PGPSLRVRVPGVVVSAASG--DGTRASMRRTSADTKGAAGSRKG 135 P P+ R + P V V A+S +G +R+S KG GSRKG Sbjct: 12 PDPAPRPQKPPVEVLASSSGAEGPPLMRKRSSKREKGLRGSRKG 55
>SNUT3_HUMAN (Q8WVK2) U4/U6.U5 tri-snRNP-associated protein 3 (U4/U6.U5| tri-snRNP-associated 27 kDa protein) (27K) (Nucleic acid-binding protein RY-1) Length = 155 Score = 28.5 bits (62), Expect = 8.4 Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 4/60 (6%) Frame = +3 Query: 72 SRSPHR----SRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDP 239 SRSP R SR + R RR E R R R+R PH R P R H + P Sbjct: 6 SRSPRRERRRSRSTSRERERRRRERSRSRERDRRRSRSRSPHRRRSRSP---RRHRSTSP 62
>UL61_HCMVA (P16818) Hypothetical protein UL61| Length = 431 Score = 28.5 bits (62), Expect = 8.4 Identities = 18/55 (32%), Positives = 23/55 (41%) Frame = -2 Query: 299 GLRLKSENTEEEPPGPSLRVRVPGVVVSAASGDGTRASMRRTSADTKGAAGSRKG 135 G L + + P G R R PG V SAA G G+R + D G +G Sbjct: 215 GTSLGTGVRDPAPRGGRGRARTPGPVHSAAGGPGSRRRSPGAARDPGPEPGEERG 269
>CBLB_XENTR (Q6DFR2) E3 ubiquitin-protein ligase CBL-B (EC 6.3.2.-) (Signal| transduction protein CBL-B) (SH3-binding protein CBL-B) Length = 982 Score = 28.5 bits (62), Expect = 8.4 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 7/61 (11%) Frame = +3 Query: 69 VSRSPHRSRCPAPRRPG---RRDEEPLPATRRPLRIRARPPHARSGSVPGGGRD----HH 227 ++RSP S +P+ R+ ++PLPA PLR PP R +P R HH Sbjct: 528 LARSPCASPTGSPKSSPCMVRKQDKPLPAPPPPLR-EPPPPPERPPPIPPDSRTCRHLHH 586 Query: 228 T 230 T Sbjct: 587 T 587
>CBLB_HUMAN (Q13191) E3 ubiquitin-protein ligase CBL-B (EC 6.3.2.-) (Signal| transduction protein CBL-B) (SH3-binding protein CBL-B) (Casitas B-lineage lymphoma proto-oncogene b) (RING finger protein 56) Length = 982 Score = 28.5 bits (62), Expect = 8.4 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Frame = +3 Query: 69 VSRSPHRSRCPAPRRPG---RRDEEPLPATRRPLRIRARPPHARSGSVPGGGR 218 + RSP S +P+ R+ ++PLPA PLR PP R +P R Sbjct: 518 IVRSPCGSPTGSPKSSPCMVRKQDKPLPAPPPPLRDPPPPPPERPPPIPPDNR 570
>GLSA_COREF (Q8FMX4) Glutaminase (EC 3.5.1.2)| Length = 423 Score = 28.5 bits (62), Expect = 8.4 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = +3 Query: 195 GSVPGGGRDHHTGDPDAQARPRRLFLGVLALQPQAPEQVLDGIG 326 G + G G D H + ++P F LALQ Q PE+V +G Sbjct: 53 GHIYGAGDDEHEFTMQSVSKP---FAYALALQEQGPEKVFATVG 93
>WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) (PRPL-2 protein) Length = 503 Score = 28.5 bits (62), Expect = 8.4 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = +3 Query: 78 SPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPG 209 S HR P P P + ++ P+P+T RP PP S PG Sbjct: 276 SIHREAVPPP--PPQNNKPPVPSTPRPSASSQAPPPPPPPSRPG 317
>PDLI7_HUMAN (Q9NR12) PDZ and LIM domain protein 7 (LIM mineralization protein)| (LMP) (Protein enigma) Length = 457 Score = 28.5 bits (62), Expect = 8.4 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +3 Query: 141 PATRRPLRIRARPPHARSGSVPGGGRDH 224 PAT PL+ R A +G VPGGG ++ Sbjct: 249 PATPTPLQSRTSIVQAAAGGVPGGGSNN 276
>INO80_ASPFU (Q4WTV7) Putative DNA helicase ino80 (EC 3.6.1.-)| Length = 1708 Score = 28.5 bits (62), Expect = 8.4 Identities = 17/38 (44%), Positives = 19/38 (50%) Frame = +3 Query: 69 VSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPP 182 +SRSPH S P+ PLPAT PL A PP Sbjct: 54 LSRSPHYSHAPS----------PLPATLPPLNGGAPPP 81 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,398,542 Number of Sequences: 219361 Number of extensions: 1222461 Number of successful extensions: 5464 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 4879 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5438 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
