ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl47e03 |
|---|---|
| Clone Library Name | barley_pub |
>Y9388_RHILO (Q981G1) UPF0261 protein mll9388| Length = 402 Score = 35.8 bits (81), Expect = 0.025 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 2/92 (2%) Frame = +1 Query: 139 VSIVDVSTTKTVPTQDSKDI--AVIARDTVLSCYPDSSQQDLPDDRGEAIALMSKALQSF 312 V +VDVS ++ D+ A +AR C+P+ + + DRG+A+A MS+AL + Sbjct: 31 VVLVDVSVSEFHSEASDVDVQPAEVAR-----CHPNPLKAEELKDRGKAVAAMSQALVEY 85 Query: 313 LKNRYEXXXXXXXXXXXXXXXXXXIAPALRSL 408 +++R + IAPA+R+L Sbjct: 86 IRSRPD---VDGIIGAGGSGGTALIAPAMRAL 114
>Y1817_BORPA (Q7W9E3) UPF0261 protein BPP1817| Length = 402 Score = 33.5 bits (75), Expect = 0.12 Identities = 20/82 (24%), Positives = 34/82 (41%) Frame = +1 Query: 163 TKTVPTQDSKDIAVIARDTVLSCYPDSSQQDLPDDRGEAIALMSKALQSFLKNRYEXXXX 342 T V T A+++ V +CYP +Q +RG AI M+ A + +L + + Sbjct: 37 TVDVATSGQGSPAMVSAQEVAACYPQGAQAVFTGERGSAIVAMALAFERYLAGQRD---V 93 Query: 343 XXXXXXXXXXXXXXIAPALRSL 408 + PA+R+L Sbjct: 94 GAVLGIGGSGGTALVTPAMRAL 115
>Y3839_YERPE (Q8ZAG3) UPF0261 protein YPO3839/y0391/YP3209| Length = 405 Score = 32.0 bits (71), Expect = 0.36 Identities = 22/61 (36%), Positives = 34/61 (55%) Frame = +1 Query: 148 VDVSTTKTVPTQDSKDIAVIARDTVLSCYPDSSQQDLPDDRGEAIALMSKALQSFLKNRY 327 VD+ST ++ +DS A I +TV +PD Q DRG+AI M+ A + F+ +R Sbjct: 35 VDLSTKES--QRDSG--ADICAETVAGYHPDGRQAVFCGDRGQAINAMAIAFERFMVSRV 90 Query: 328 E 330 + Sbjct: 91 D 91
>Y3289_BORBR (Q7WHB9) UPF0261 protein BB3289| Length = 402 Score = 31.6 bits (70), Expect = 0.47 Identities = 19/82 (23%), Positives = 34/82 (41%) Frame = +1 Query: 163 TKTVPTQDSKDIAVIARDTVLSCYPDSSQQDLPDDRGEAIALMSKALQSFLKNRYEXXXX 342 T V T A+++ V +C+P +Q +RG AI M+ A + +L + + Sbjct: 37 TVDVATSGQGSPAMVSAQEVAACHPQGAQAVFTGERGSAIVAMALAFERYLAGQRD---V 93 Query: 343 XXXXXXXXXXXXXXIAPALRSL 408 + PA+R+L Sbjct: 94 GAVLGIGGSGGTALVTPAMRAL 115
>Y1203_BORPE (Q7VYV4) UPF0261 protein BP1203| Length = 402 Score = 31.6 bits (70), Expect = 0.47 Identities = 19/82 (23%), Positives = 34/82 (41%) Frame = +1 Query: 163 TKTVPTQDSKDIAVIARDTVLSCYPDSSQQDLPDDRGEAIALMSKALQSFLKNRYEXXXX 342 T V T A+++ V +C+P +Q +RG AI M+ A + +L + + Sbjct: 37 TVDVATSGQGSPAMVSAQEVAACHPQGAQAVFTGERGSAIVAMALAFERYLAGQRD---V 93 Query: 343 XXXXXXXXXXXXXXIAPALRSL 408 + PA+R+L Sbjct: 94 GAVLGIGGSGGTALVTPAMRAL 115
>PTPRG_MOUSE (Q05909) Receptor-type tyrosine-protein phosphatase gamma precursor| (EC 3.1.3.48) (Protein-tyrosine phosphatase gamma) (R-PTP-gamma) Length = 1442 Score = 29.6 bits (65), Expect = 1.8 Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 3/57 (5%) Frame = -2 Query: 287 SAIASPLSSGRSCWLESG*HERTVSLAITAM--SLESCVGTVLVVDTSTMLT-LTFG 126 SA +P+SSG S W SG VS+A T M S TV V TST+L L FG Sbjct: 467 SADMAPISSGSSTWTSSGIPFSFVSMA-TGMGPSSSGSQATVASVVTSTLLAGLGFG 522
>PTPRG_HUMAN (P23470) Receptor-type tyrosine-protein phosphatase gamma precursor| (EC 3.1.3.48) (Protein-tyrosine phosphatase gamma) (R-PTP-gamma) Length = 1445 Score = 29.6 bits (65), Expect = 1.8 Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 3/57 (5%) Frame = -2 Query: 287 SAIASPLSSGRSCWLESG*HERTVSLAITAM--SLESCVGTVLVVDTSTMLT-LTFG 126 SA +P+SSG S W SG VS+A T M S TV V TST+L L FG Sbjct: 467 SADMAPISSGSSTWTSSGIPFSFVSMA-TGMGPSSSGSQATVASVVTSTLLAGLGFG 522
>Y4129_RHIME (Q92YY3) UPF0261 protein RA0729| Length = 398 Score = 29.6 bits (65), Expect = 1.8 Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 1/96 (1%) Frame = +1 Query: 40 VLCIGTADTKXXXXXXXXXXXXXXXXXXGPKVKVSIVDVSTTKTVPTQDSKDIAVIARDT 219 + +GTADTK + +VDV T + D I+ +T Sbjct: 4 IYVVGTADTKGEELVYLASCVEAAGG------RPVLVDVGTRRPTVLVD------ISAET 51 Query: 220 VLSCYPDSSQQDLP-DDRGEAIALMSKALQSFLKNR 324 V + +P + L +DRG AIA M +A FL R Sbjct: 52 VAAVHPGGAAAVLSGNDRGTAIAAMGEAFARFLPAR 87
>EEA1_MOUSE (Q8BL66) Early endosome antigen 1| Length = 1411 Score = 28.9 bits (63), Expect = 3.0 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -1 Query: 225 ENCISCNNCNVFGILCWHCFSCGHIHYA 142 +NC+SC C + HC CG+I A Sbjct: 1356 QNCMSCGKCFSVTVRRHHCRQCGNIFCA 1383
>PTPRG_CHICK (Q98936) Receptor-type tyrosine-protein phosphatase gamma precursor| (EC 3.1.3.48) (Protein-tyrosine phosphatase gamma) (R-PTP-gamma) Length = 1422 Score = 28.9 bits (63), Expect = 3.0 Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = -2 Query: 287 SAIASPLSSGRSCWLESG*HERTVSLAITAM--SLESCVGTVLVVDTSTML 141 SA +P+SSG S W SG VS+A T M S TV V TST+L Sbjct: 467 SADMAPISSGSSTWTSSGLPFSFVSMA-TGMGPSSSGSQATVASVVTSTLL 516
>SEM5B_HUMAN (Q9P283) Semaphorin-5B precursor| Length = 1093 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%) Frame = -3 Query: 382 VRFLHFPLXXXXXXXXXPHICFSGSSEGPL-----T*AQSLHLCHLEDL 251 VRF H + H+ + G+ G + T ++SLH C+LE+L Sbjct: 411 VRFSHLVVDLVQAKDTLYHVLYIGTESGTILKALSTASRSLHGCYLEEL 459
>AMY2_SCHPO (O42918) Probable alpha-amylase meu7 precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) (Meiotic expression up-regulated protein 7) Length = 774 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/37 (27%), Positives = 22/37 (59%) Frame = +1 Query: 148 VDVSTTKTVPTQDSKDIAVIARDTVLSCYPDSSQQDL 258 +DV + K+VP QD++ + ++ + YP+ S ++ Sbjct: 685 MDVLSCKSVPVQDNRQVFMVRNGEPMILYPEESAYEM 721
>DTXR_CORGL (Q8NP95) Diphtheria toxin repressor (Iron-dependent diphtheria tox| regulatory element) (Tox regulatory factor) Length = 228 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +1 Query: 187 SKDIAVIARDTVLSCYPDSSQQDLPDDRGEAIALMSK 297 S+ +A + RD ++ PD S + P+ R AIA+M K Sbjct: 42 SQTVARMERDGLVHVSPDRSLEMTPEGRSLAIAVMRK 78
>DTXR_COREF (Q8FPG6) Diphtheria toxin repressor (Iron-dependent diphtheria tox| regulatory element) (Tox regulatory factor) Length = 230 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +1 Query: 187 SKDIAVIARDTVLSCYPDSSQQDLPDDRGEAIALMSK 297 S+ +A + RD ++ PD S + P+ R AIA+M K Sbjct: 42 SQTVARMERDGLVHVSPDRSLEMTPEGRALAIAVMRK 78 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.129 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,067,137 Number of Sequences: 219361 Number of extensions: 680070 Number of successful extensions: 2073 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2046 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2073 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
