ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl47e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ACA2_ARATH (O81108) Calcium-transporting ATPase 2, plasma membra... 51 1e-06
2ACA7_ARATH (O64806) Putative calcium-transporting ATPase 7, plas... 47 3e-05
3ACA1_ARATH (Q37145) Calcium-transporting ATPase 1, chloroplast p... 44 2e-04
4ACA11_ARATH (Q9M2L4) Putative calcium-transporting ATPase 11, pl... 39 0.008
5ACA4_ARATH (O22218) Calcium-transporting ATPase 4, plasma membra... 35 0.12
6CD2A2_HUMAN (Q8N726) Cyclin-dependent kinase inhibitor 2A, isofo... 30 2.9
7EDN3_CANFA (Q765Z4) Endothelin-3 precursor (ET-3) (Preproendothe... 29 5.0
8ATX2L_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain prot... 29 6.6
9ARHGB_HUMAN (O15085) Rho guanine nucleotide exchange factor 11 (... 29 6.6

>ACA2_ARATH (O81108) Calcium-transporting ATPase 2, plasma membrane-type (EC|
           3.6.3.8) (Ca(2+)-ATPase isoform 2)
          Length = 1014

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 24/34 (70%), Positives = 28/34 (82%)
 Frame = +1

Query: 358 YVVPEDVRAAGFQIGADELTSIVESHDTERLTEH 459
           Y VPEDV+AAGF+I ADEL SIVESHD ++L  H
Sbjct: 83  YTVPEDVKAAGFEICADELGSIVESHDVKKLKFH 116



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>ACA7_ARATH (O64806) Putative calcium-transporting ATPase 7, plasma|
           membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 7)
          Length = 1015

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 22/34 (64%), Positives = 26/34 (76%)
 Frame = +1

Query: 358 YVVPEDVRAAGFQIGADELTSIVESHDTERLTEH 459
           Y VPE+V+AAGF I ADEL SIVE HD ++L  H
Sbjct: 83  YKVPEEVKAAGFDICADELGSIVEGHDVKKLKFH 116



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>ACA1_ARATH (Q37145) Calcium-transporting ATPase 1, chloroplast precursor (EC|
           3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope
           ATPase 1)
          Length = 1020

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 20/34 (58%), Positives = 25/34 (73%)
 Frame = +1

Query: 358 YVVPEDVRAAGFQIGADELTSIVESHDTERLTEH 459
           Y +PE+VR AGF+I  DEL SIVE HD ++L  H
Sbjct: 85  YTLPEEVRKAGFEICPDELGSIVEGHDLKKLKIH 118



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>ACA11_ARATH (Q9M2L4) Putative calcium-transporting ATPase 11, plasma|
           membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 11)
          Length = 1025

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 16/33 (48%), Positives = 25/33 (75%)
 Frame = +1

Query: 358 YVVPEDVRAAGFQIGADELTSIVESHDTERLTE 456
           Y + ++V+ AGF + ADEL S+V +HDT+ LT+
Sbjct: 82  YKLTDEVKKAGFYVEADELASMVRNHDTKSLTK 114



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>ACA4_ARATH (O22218) Calcium-transporting ATPase 4, plasma membrane-type (EC|
           3.6.3.8) (Ca(2+)-ATPase isoform 4)
          Length = 1030

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = +1

Query: 358 YVVPEDVRAAGFQIGADELTSIVESHDTERLTE 456
           Y + ++V+ AGF I ADEL S+V  +DT+ L +
Sbjct: 82  YKLTDEVKKAGFSIEADELASMVRKNDTKSLAQ 114



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>CD2A2_HUMAN (Q8N726) Cyclin-dependent kinase inhibitor 2A, isoform 4 (p14ARF)|
           (p19ARF)
          Length = 173

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 15/25 (60%), Positives = 15/25 (60%)
 Frame = -3

Query: 140 RPRHAHGIRRQGRAAAAPERGASWR 66
           RP H  G R  G AAAAP RGA  R
Sbjct: 104 RPGHDDGQRPSGGAAAAPRRGAQLR 128



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>EDN3_CANFA (Q765Z4) Endothelin-3 precursor (ET-3) (Preproendothelin-3) (PPET3)|
          Length = 198

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 18/59 (30%), Positives = 24/59 (40%)
 Frame = -3

Query: 212 GLPVSAAPQGLRRHGRRSIAVDTPRPRHAHGIRRQGRAAAAPERGASWRGRARRPLCIS 36
           G P +A  +G  +      AV  P PR     +  GR      +G    GRARR  C +
Sbjct: 35  GTPPTARSEGDIQEPVAMTAVQGPSPRSPEQEQELGRFGEQASKGGPVHGRARRCTCFT 93



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>ATX2L_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain protein)|
           (Ataxin-2-related protein)
          Length = 1075

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 20/45 (44%), Positives = 21/45 (46%)
 Frame = -3

Query: 206 PVSAAPQGLRRHGRRSIAVDTPRPRHAHGIRRQGRAAAAPERGAS 72
           PV+AA  GLRR G   I    P P   H   R G AA    RG S
Sbjct: 61  PVAAAGSGLRR-GAEGILAPQPPPPQQHQ-ERPGAAAIGSARGQS 103



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>ARHGB_HUMAN (O15085) Rho guanine nucleotide exchange factor 11 (PDZ-RhoGEF)|
          Length = 1522

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
 Frame = -3

Query: 152 VDTPRP------RHAHGIRRQGRAAAAPERGASWRGRARRPLCISVE*DIFPSFY 6
           +D+PR       R A   RRQG  AA P  G     ++ +PL I  E D  P ++
Sbjct: 249 LDSPRTSPVIMARVAQHHRRQGSDAAVPSTGDQGVDQSPKPLIIGPEEDYDPGYF 303


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,394,172
Number of Sequences: 219361
Number of extensions: 622982
Number of successful extensions: 2068
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2068
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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