>ECM29_MOUSE (Q6PDI5) Proteasome-associated protein ECM29 homolog (Ecm29)|
          Length = 1840

 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
 Frame = +1

Query: 148 DALDRMLTRLALAE-DGRLAPLLVRVLPYAITSFASTSTSVRKLAMEILSHINKRVKHRP 324
           D L+R+  RL  AE D +L  ++ + LP  +   +ST   VRK  ME+L H+NKR+K RP
Sbjct: 8   DQLERVFLRLGHAETDEQLQNIISKFLPPVLLKLSSTQEGVRKKVMELLVHLNKRIKSRP 67

Query: 325 EI 330
           +I
Sbjct: 68  KI 69

>ECM29_HUMAN (Q5VYK3) Proteasome-associated protein ECM29 homolog (Ecm29)|
          Length = 1845

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
 Frame = +1

Query: 154 LDRMLTRLALAE-DGRLAPLLVRVLPYAITSFASTSTSVRKLAMEILSHINKRVKHRPEI 330
           L+R+  RL  AE D +L  ++ + LP  +   +ST   VRK  ME+L H+NKR+K RP+I
Sbjct: 16  LERVFLRLGHAETDEQLQNIISKFLPPVLLKLSSTQEGVRKKVMELLVHLNKRIKSRPKI 75

>ECM29_PONPY (Q5R6J0) Proteasome-associated protein ECM29 homolog (Ecm29)|
           (Fragment)
          Length = 1810

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 17/38 (44%), Positives = 24/38 (63%)
 Frame = +1

Query: 217 RVLPYAITSFASTSTSVRKLAMEILSHINKRVKHRPEI 330
           + LP  +   +ST   VRK  ME+L H+NKR+K  P+I
Sbjct: 3   KFLPPVLLKLSSTQEGVRKKVMELLVHLNKRIKSPPKI 40

>ECM29_DROME (Q9V677) Proteasome-associated protein ECM29 homolog|
          Length = 1890

 Score = 30.8 bits (68), Expect = 0.88
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 148 DALDRMLTRLALAE-DGRLAPLLVRVLPYAITSFASTSTSVRKLAMEILSHINKRVKHRP 324
           + L+R+L RL  A+ D +L   + + L   I    S    VR   +E+L+HI +R+  R 
Sbjct: 10  ELLERVLLRLGNADSDEKLEAAVGKFLTPVILKMNSPHNVVRTKVVEVLTHIKRRLSSRG 69

Query: 325 EI 330
            +
Sbjct: 70  HV 71

>Y1032_TREPA (O83995) Hypothetical protein TP1032|
          Length = 144

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 11/45 (24%)
 Frame = -1

Query: 109 TAPPSRAA-----------GCCVGLAQSPLVWSLPSGARRKGGAR 8
           T+PP+RAA           GCCV L  +   WS     R +GGAR
Sbjct: 11  TSPPNRAAAARGGRLTLLDGCCVALVLALTAWSGFFVYRMQGGAR 55

>TRYC_MANSE (P35047) Trypsin, alkaline C precursor (EC 3.4.21.4)|
          Length = 256

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 106 APPSRAAGCCVGLAQSPLVWSLPSGARRKGG 14
           A P+R AG    L  + +VW+   GA R GG
Sbjct: 131 AQPARIAGANYNLGDNQVVWAAGWGAIRSGG 161

>TRYA_MANSE (P35045) Trypsin, alkaline A precursor (EC 3.4.21.4)|
          Length = 256

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 106 APPSRAAGCCVGLAQSPLVWSLPSGARRKGG 14
           A P+R AG    L  + +VW+   GA R GG
Sbjct: 131 AQPARIAGANYNLGDNQVVWAAGWGAIRSGG 161

>BTAF1_HUMAN (O14981) TATA-binding protein-associated factor 172 (EC 3.6.1.-)|
            (ATP-dependent helicase BTAF1) (TBP-associated factor
            172) (TAF-172) (TAF(II)170) (B-TFIID transcription
            factor-associated 170 kDa subunit)
          Length = 1849

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 178  ALAEDGRLAPLLVRVLPYAITSFASTSTSVRKLAMEILSHINK 306
            A + D  L PLLV+ LP+        ST+VR +A   +  ++K
Sbjct: 1093 AASMDSELHPLLVQHLPHLYMCLQYPSTAVRHMAARCVGVMSK 1135


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,153,133
Number of Sequences: 219361
Number of extensions: 296919
Number of successful extensions: 992
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)