ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl47d04 |
|---|---|
| Clone Library Name | barley_pub |
>COPG2_MOUSE (Q9QXK3) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 81.6 bits (200), Expect = 9e-16 Identities = 37/63 (58%), Positives = 50/63 (79%) Frame = +1 Query: 271 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKL 450 +PF +EK AVLQEAR+F++ ++ RRC ++TK+LYLLNQG+ F +EATE FFA T+L Sbjct: 17 NPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGTMEATEAFFAMTRL 76 Query: 451 FQS 459 FQS Sbjct: 77 FQS 79
>COPG2_HUMAN (Q9UBF2) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 81.3 bits (199), Expect = 1e-15 Identities = 37/63 (58%), Positives = 49/63 (77%) Frame = +1 Query: 271 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKL 450 +PF +EK AVLQEAR+F++ ++ RRC ++TK+LYLLNQG+ F EATE FFA T+L Sbjct: 17 NPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGTTEATEAFFAMTRL 76 Query: 451 FQS 459 FQS Sbjct: 77 FQS 79
>COPG_HUMAN (Q9Y678) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 79.0 bits (193), Expect = 6e-15 Identities = 36/63 (57%), Positives = 48/63 (76%) Frame = +1 Query: 271 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKL 450 +PF +EK AVLQEARVF++ ++ R+C ++TK+LYL+NQG+ EATE FFA TKL Sbjct: 17 NPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKL 76 Query: 451 FQS 459 FQS Sbjct: 77 FQS 79
>COPG_BOVIN (P53620) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 79.0 bits (193), Expect = 6e-15 Identities = 36/63 (57%), Positives = 48/63 (76%) Frame = +1 Query: 271 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKL 450 +PF +EK AVLQEARVF++ ++ R+C ++TK+LYL+NQG+ EATE FFA TKL Sbjct: 17 NPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKL 76 Query: 451 FQS 459 FQS Sbjct: 77 FQS 79
>COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 870 Score = 71.2 bits (173), Expect = 1e-12 Identities = 29/59 (49%), Positives = 47/59 (79%) Frame = +1 Query: 286 IEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKLFQSK 462 ++K +VLQEAR F++ ++AR+CC +++KL+Y++ QG++ + EATE FF TKL+QSK Sbjct: 18 LDKTSVLQEARAFNETPINARKCCFILSKLIYIIQQGESIGRTEATEAFFGVTKLWQSK 76
>COPG_SCHPO (P87140) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 905 Score = 52.4 bits (124), Expect = 6e-07 Identities = 24/64 (37%), Positives = 40/64 (62%) Frame = +1 Query: 271 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKL 450 S F + + V Q+AR F+ + R+ ++++K+ YL+ G+ F + +ATE+FF TKL Sbjct: 13 SIFANVNQVTVTQDARAFNSSSISPRKSRRLLSKIAYLIYTGEHFQEKQATELFFGITKL 72 Query: 451 FQSK 462 FQ K Sbjct: 73 FQHK 76
>COPG_YEAST (P32074) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 935 Score = 47.0 bits (110), Expect = 3e-05 Identities = 23/57 (40%), Positives = 40/57 (70%), Gaps = 1/57 (1%) Frame = +1 Query: 289 EKGAVLQEA-RVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKLFQ 456 +K + Q+ F++ ++++RC +I++LL LL QG+TF + EAT +FF+ +KLFQ Sbjct: 19 DKMTIYQDCMNTFNESPVNSKRCRLLISRLLRLLAQGETFPQNEATALFFSISKLFQ 75
>ICP0_EHV1V (P84445) Trans-acting transcriptional protein ICP0 (Infected cell| protein 0) Length = 532 Score = 30.0 bits (66), Expect = 3.2 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = +2 Query: 80 SSLAKPRDKDSRELSRRPAPPPFSRHSGR 166 SS PR +DSR RP PP R GR Sbjct: 247 SSAQAPRQEDSRPARARPGPPTRGRRRGR 275
>ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0| Length = 532 Score = 30.0 bits (66), Expect = 3.2 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = +2 Query: 80 SSLAKPRDKDSRELSRRPAPPPFSRHSGR 166 SS PR +DSR RP PP R GR Sbjct: 247 SSAQAPRQEDSRPARARPGPPTRGRRRGR 275
>MTB1_BRUAB (P0C116) Modification methylase BabI (EC 2.1.1.72)| (Adenine-specific methyltransferase BabI) (M.BabI) (M.CcrMI) Length = 377 Score = 28.9 bits (63), Expect = 7.1 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -2 Query: 354 ASPRIKLRVVEDAGLLQDGTLLDAEERR 271 A PR+ V +AGLL+ GT+L E RR Sbjct: 284 AEPRVAFTSVMEAGLLRPGTVLCDERRR 311
>MTB1_BRUA2 (Q2YMK2) Modification methylase BabI (EC 2.1.1.72)| (Adenine-specific methyltransferase BabI) (M.BabI) (M.CcrMI) Length = 377 Score = 28.9 bits (63), Expect = 7.1 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -2 Query: 354 ASPRIKLRVVEDAGLLQDGTLLDAEERR 271 A PR+ V +AGLL+ GT+L E RR Sbjct: 284 AEPRVAFTSVMEAGLLRPGTVLCDERRR 311
>MUTS_NEIMB (Q9JX94) DNA mismatch repair protein mutS| Length = 864 Score = 28.5 bits (62), Expect = 9.2 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Frame = -2 Query: 438 SEEYLCGLY-LGKGVTLVEQI*KLGDHLAASPRIKLRVVEDAGLLQDGTLLDAEE 277 +E+YL L LGK V + EQ+ ++G R +R+V G L D LL+ +E Sbjct: 72 AEQYLARLVKLGKSVAICEQVGEVGAGKGPVERKVVRIV-TPGTLTDSALLEDKE 125
>MUTS_NEIMA (Q9JWT7) DNA mismatch repair protein mutS| Length = 864 Score = 28.5 bits (62), Expect = 9.2 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Frame = -2 Query: 438 SEEYLCGLY-LGKGVTLVEQI*KLGDHLAASPRIKLRVVEDAGLLQDGTLLDAEE 277 +E+YL L LGK V + EQ+ ++G R +R+V G L D LL+ +E Sbjct: 72 AEQYLARLVKLGKSVAICEQVGEVGAGKGPVERKVVRIV-TPGTLTDSALLEDKE 125
>MUTS_NEIG1 (Q5F5J4) DNA mismatch repair protein mutS| Length = 864 Score = 28.5 bits (62), Expect = 9.2 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Frame = -2 Query: 438 SEEYLCGLY-LGKGVTLVEQI*KLGDHLAASPRIKLRVVEDAGLLQDGTLLDAEE 277 +E+YL L LGK V + EQ+ ++G R +R+V G L D LL+ +E Sbjct: 72 AEQYLARLVKLGKSVAICEQVGEVGAGKGPVERKVVRIV-TPGTLTDSALLEDKE 125
>ST32C_HUMAN (Q86UX6) Serine/threonine-protein kinase 32C (EC 2.7.11.1) (PKE)| (YANK3) Length = 486 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = +2 Query: 104 KDSRELSRRPAPPPFSRHSGRPGRTIRARIAPPQQGP 214 K S++L R P P P SR + P R A P GP Sbjct: 442 KRSQDLPREPLPAPESRDAAEPVEDEAERSALPMCGP 478 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,516,078 Number of Sequences: 219361 Number of extensions: 856632 Number of successful extensions: 3015 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2849 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3000 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
