Clone Information

BLAST Search Result

Clone Name	bastl47d01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	IE18_PRVKA (P33479) Immediate-early protein IE180	33	0.17
2	MYOZ2_MOUSE (Q9JJW5) Myozenin-2 (Calsarcin-1) (FATZ-related prot...	32	0.29
3	MYOZ2_BOVIN (Q5E9V3) Myozenin-2 (Calsarcin-1)	32	0.29
4	DOK3_HUMAN (Q7L591) Docking protein 3 (Downstream of tyrosine ki...	32	0.29
5	MYOZ2_PONPY (Q5R6I2) Myozenin-2 (Calsarcin-1)	32	0.50
6	MYOZ2_HUMAN (Q9NPC6) Myozenin-2 (Calsarcin-1) (FATZ-related prot...	32	0.50
7	SOX18_HUMAN (P35713) Transcription factor SOX-18	31	0.86
8	PRRT1_MOUSE (O35449) Proline-rich transmembrane protein 1	30	1.1
9	GPDA_BIFLO (Q8G7C3) Glycerol-3-phosphate dehydrogenase [NAD(P)+]...	30	1.1
10	SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains prote...	30	1.5
11	WNK4_MOUSE (Q80UE6) Serine/threonine-protein kinase WNK4 (EC 2.7...	30	1.5
12	IE18_PRVIF (P11675) Immediate-early protein IE180	30	1.5
13	CMTA2_HUMAN (O94983) Calmodulin-binding transcription activator 2	30	1.9
14	STK39_MOUSE (Q9Z1W9) STE20/SPS1-related proline-alanine-rich pro...	30	1.9
15	CHCH2_MOUSE (Q9D1L0) Coiled-coil-helix-coiled-coil-helix domain-...	30	1.9
16	CO1A2_RABIT (Q28668) Collagen alpha-2(I) chain precursor (Fragment)	29	2.5
17	STK39_RAT (O88506) STE20/SPS1-related proline-alanine-rich prote...	29	2.5
18	TPIC_SECCE (P46225) Triosephosphate isomerase, chloroplast precu...	29	3.3
19	NCA11_MOUSE (P13595) Neural cell adhesion molecule 1, 180 kDa is...	28	4.3
20	Y091_NPVOP (O10341) Hypothetical 29.3 kDa protein (ORF92)	28	4.3
21	PHLPP_MOUSE (Q8CHE4) PH domain leucine-rich repeat-containing pr...	28	4.3
22	SPAST_MOUSE (Q9QYY8) Spastin	28	4.3
23	LEG3_MOUSE (P16110) Galectin-3 (Galactose-specific lectin 3) (Ma...	28	5.6
24	CXA3_SHEEP (Q9TU17) Gap junction alpha-3 protein (Connexin-44) (...	28	5.6
25	MECT1_MOUSE (Q68ED7) Mucoepidermoid carcinoma translocated prote...	28	5.6
26	MYSC_ACACA (P10569) Myosin IC heavy chain	28	7.3
27	NPLP3_DROME (Q9VV28) Neuropeptide-like 3 precursor [Contains: SH...	28	7.3
28	PHR_SYNY3 (Q55081) Deoxyribodipyrimidine photo-lyase (EC 4.1.99....	28	7.3
29	PDI_ALTAL (Q00002) Protein disulfide-isomerase (EC 5.3.4.1) (PDI...	28	7.3
30	CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor	28	7.3
31	CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor	28	7.3
32	KAO1_HORVU (Q9AXH9) Ent-kaurenoic acid oxidase 1 (EC 1.14.13.79)...	28	7.3
33	SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)	28	7.3
34	GUNA_MICBI (P26414) Endoglucanase A precursor (EC 3.2.1.4) (Endo...	27	9.5
35	RARA_MOUSE (P11416) Retinoic acid receptor alpha (RAR-alpha)	27	9.5
36	GAB2_RAT (Q9EQH1) GRB2-associated binding protein 2 (GRB2-associ...	27	9.5
37	SYN1_RAT (P09951) Synapsin-1 (Synapsin I)	27	9.5
38	SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)	27	9.5
39	CBK1_EMENI (P0C1B1) Serine/threonine-protein kinase cbk1 (EC 2.7...	27	9.5
40	PRRT1_HUMAN (Q99946) Proline-rich transmembrane protein 1	27	9.5
41	ODP2_RHIME (Q9R9N3) Dihydrolipoyllysine-residue acetyltransferas...	27	9.5
42	FTSH_MYCTU (P0A4V8) Cell division protein ftsH homolog (EC 3.4.2...	27	9.5
43	FTSH_MYCBO (P0A4V9) Cell division protein ftsH homolog (EC 3.4.2...	27	9.5
44	FHAB_BORPE (P12255) Filamentous hemagglutinin	27	9.5
45	CBP_MOUSE (P45481) CREB-binding protein (EC 2.3.1.48)	27	9.5
46	SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)	27	9.5
47	BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-assoc...	27	9.5

>IE18_PRVKA (P33479) Immediate-early protein IE180|
          Length = 1446

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = +3

Query: 9   APPASSPVPQISPDPRRISPGRTTPAGEGGPLA 107
           +P +SS  P  S  PRR SP R  P GE GP A
Sbjct: 173 SPASSSGSPGPSAAPRRWSPARGDPVGEPGPAA 205

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>MYOZ2_MOUSE (Q9JJW5) Myozenin-2 (Calsarcin-1) (FATZ-related protein 2)|
          Length = 264

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +3

Query: 15  PASSPVPQISPDPRRISPGRTTPAGEGGP-----LAAAMYMAYGWPQSIPLDP 158
           P ++P P+  P+P  I+PG + P  E  P      A   Y    W Q+I  DP
Sbjct: 108 PPNTPDPRSPPNPENIAPGYSGPLKEIPPERFNTTAVPKYYRSPWEQAIGSDP 160

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>MYOZ2_BOVIN (Q5E9V3) Myozenin-2 (Calsarcin-1)|
          Length = 264

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +3

Query: 15  PASSPVPQISPDPRRISPGRTTPAGEGGP-----LAAAMYMAYGWPQSIPLDP 158
           P ++P P+  P+P  I+PG + P  E  P      A   Y    W Q+I  DP
Sbjct: 108 PPNTPDPRSPPNPENIAPGYSGPLKEIPPERFNTTAVPKYYQSPWEQAISNDP 160

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>DOK3_HUMAN (Q7L591) Docking protein 3 (Downstream of tyrosine kinase 3)|
          Length = 496

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 4/118 (3%)
 Frame = +3

Query: 6   LAPPASSPVPQISPDPRRISPG--RTTPAGEGGPLAAAMYMAYGWPQSIP--LDPGESDX 173
           L  P   P+P+ +  P   +PG  R  P G   P +  M++A   PQS+P  L P  +D 
Sbjct: 317 LTRPQPCPLPRATSLPSLDTPGELREMPPGPEPPTSRKMHLAEPGPQSLPLLLGPEPNDL 376

Query: 174 XXXXXXXXXXXXXVCPASLHLWSASHHKVRLARLDRSPDSLAAHGPNADAVWSPDAKT 347
                          P + HL+        L  L+ SP     HG   +    P +++
Sbjct: 377 ASGLYASVCKRASGPPGNEHLYE------NLCVLEASP---TLHGGEPEPHEGPGSRS 425

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>MYOZ2_PONPY (Q5R6I2) Myozenin-2 (Calsarcin-1)|
          Length = 264

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +3

Query: 15  PASSPVPQISPDPRRISPGRTTPAGEGGP-----LAAAMYMAYGWPQSIPLDP 158
           P ++P P+  P+P  I+PG + P  E  P      A   Y    W Q+I  DP
Sbjct: 108 PPNTPDPRSPPNPDNIAPGYSGPLKEIPPEKFNTTAVPKYYQSPWEQAISNDP 160

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>MYOZ2_HUMAN (Q9NPC6) Myozenin-2 (Calsarcin-1) (FATZ-related protein 2)|
          Length = 264

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +3

Query: 15  PASSPVPQISPDPRRISPGRTTPAGEGGP-----LAAAMYMAYGWPQSIPLDP 158
           P ++P P+  P+P  I+PG + P  E  P      A   Y    W Q+I  DP
Sbjct: 108 PPNTPDPRSPPNPDNIAPGYSGPLKEIPPEKFNTTAVPKYYQSPWEQAISNDP 160

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>SOX18_HUMAN (P35713) Transcription factor SOX-18|
          Length = 384

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 20/36 (55%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 9   APPASSPVPQISPDPRRISPGR--TTPAGEGGPLAA 110
           A PAS P PQ SP PR   PGR   +PAG G   AA
Sbjct: 46  AAPASPPSPQRSP-PRSPEPGRYGLSPAGRGERQAA 80

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>PRRT1_MOUSE (O35449) Proline-rich transmembrane protein 1|
          Length = 306

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 12  PPASSPVPQISPDPRRISPGRTTP--AGEGGPLAAAMYMAYGWP 137
           PPA++  P  +P P   +PG   P  AG  G L    Y+A G+P
Sbjct: 126 PPAAAAPPPPAPAPTAQAPGFVVPTHAGAVGTLPLGGYVAPGYP 169

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>GPDA_BIFLO (Q8G7C3) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)|
           (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
          Length = 333

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 249 HHKVRLARLDRSPDSLAAHGPNADAVWSPDAKTVA 353
           H+ VRL  +++ PD++ A G  A+AV + D   VA
Sbjct: 46  HNAVRLPSVEKLPDNMTATGDRAEAVKNADIVVVA 80

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>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
            (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon)
            (Somatostatin receptor-interacting protein)
            (SSTR-interacting protein) (SSTRIP)
          Length = 2167

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +3

Query: 12   PPASSPVPQISPDPRRISPGRTTPAGEGGP 101
            P  S P P  S  P   S GR TP+  GGP
Sbjct: 932  PTTSPPEPPYSTPPAPSSSGRLTPSPRGGP 961

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>WNK4_MOUSE (Q80UE6) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1)|
           (Protein kinase with no lysine 4) (Protein kinase,
           lysine-deficient 4)
          Length = 1222

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 12  PPASSPVPQISPDPRRISPGRTTPAGEGGPLAAAMYMAYGWPQSIP 149
           PP + P   ISP+ R  +   T+P+  G PL+     + G P   P
Sbjct: 773 PPNAEPQRSISPEQRSWAAFSTSPSSPGTPLSPGAPFSPGTPPVFP 818

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>IE18_PRVIF (P11675) Immediate-early protein IE180|
          Length = 1461

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/29 (55%), Positives = 16/29 (55%)
 Frame = +3

Query: 21  SSPVPQISPDPRRISPGRTTPAGEGGPLA 107
           SS  P  S  PRR SP R  P GE GP A
Sbjct: 185 SSGSPGPSAAPRRWSPARGDPVGEPGPAA 213

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>CMTA2_HUMAN (O94983) Calmodulin-binding transcription activator 2|
          Length = 1202

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +3

Query: 9   APPASSPVPQISPDPRRISPGRTTPAGE---GGPLAAA 113
           APP  SP P   P P  + P      GE   GGP+ A+
Sbjct: 459 APPIPSPPPSPPPSPAPLEPSSRVGRGEALFGGPVGAS 496

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>STK39_MOUSE (Q9Z1W9) STE20/SPS1-related proline-alanine-rich protein kinase (EC|
           2.7.11.1) (Ste-20-related kinase)
           (Serine/threonine-protein kinase 39)
          Length = 556

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +3

Query: 9   APPASSPVPQISPDPRRISPGRTTPAGEGGPLAAAMYMAYGWP 137
           AP A++  P  +P P   +     PA    P  A    A GWP
Sbjct: 27  APAAATSAPAPAPAPAPAASAAPAPAPAAAPAPAPAAQAVGWP 69

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>CHCH2_MOUSE (Q9D1L0) Coiled-coil-helix-coiled-coil-helix domain-containing|
           protein 2
          Length = 153

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 22/53 (41%), Positives = 26/53 (49%)
 Frame = +3

Query: 3   RLAPPASSPVPQISPDPRRISPGRTTPAGEGGPLAAAMYMAYGWPQSIPLDPG 161
           R+ PPAS   PQ+   PRR       PA +  P AAA   A G P + P  PG
Sbjct: 11  RVTPPASR-APQMRAAPRR------APAAQ--PPAAAAPSAVGSPAAAPRQPG 54

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>CO1A2_RABIT (Q28668) Collagen alpha-2(I) chain precursor (Fragment)|
          Length = 526

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +3

Query: 18  ASSPVPQ--ISPDPRRISPGRTTPAGEGGPLAAAMYMAYGWPQSIPLDPGE 164
           A +P PQ  + P  +  + G   PAG  GP+ AA       PQ I  D GE
Sbjct: 120 AGAPGPQGSVGPTGKHGNRGEPGPAGSIGPVGAAGPRGPSGPQGIRGDKGE 170

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>STK39_RAT (O88506) STE20/SPS1-related proline-alanine-rich protein kinase (EC|
           2.7.11.1) (Ste-20-related kinase)
           (Serine/threonine-protein kinase 39) (Pancreatic
           serine/threonine-protein kinase) (PS/TK) (PSTK1)
          Length = 553

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 9   APPASSPVPQISPDPRRISPGRTTPAGEGGPLAAAMYMAYGWP 137
           AP A++  P  +P P   +P    PA    P  A    A GWP
Sbjct: 26  APAAATSAP--APAPAPAAPAAPAPAPAAAPAPAPAAQAVGWP 66

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>TPIC_SECCE (P46225) Triosephosphate isomerase, chloroplast precursor (EC|
           5.3.1.1) (TIM) (Triose-phosphate isomerase)
          Length = 298

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 3   RLAPPASSPVPQISPDPRRISPGRTTPAGEGGPLAAAMYMA 125
           R +PP +SP P   P PR  +  RTT +    P AA   +A
Sbjct: 5   RPSPPPASPPP---PRPRSTTTTRTTSSASAAPAAAQRLVA 42

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>NCA11_MOUSE (P13595) Neural cell adhesion molecule 1, 180 kDa isoform precursor|
            (N-CAM 180) (NCAM-180)
          Length = 1115

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 15   PASSPVPQISPDPRRISPGRT-TPAGEGGPLAAAMYMAYGWPQS 143
            PAS+     +P   + SP  T TPAG   PLAA    A   PQ+
Sbjct: 930  PASAGETSKAPPASKASPAPTPTPAGAASPLAAVAAPATDAPQA 973

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>Y091_NPVOP (O10341) Hypothetical 29.3 kDa protein (ORF92)|
          Length = 279

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +3

Query: 15  PASSPVPQISPDPRRISPGRTTPAGEGGPLAAAMY 119
           P  SP P  SP P    P   TP     PL   MY
Sbjct: 163 PTPSPTPTPSPTPSPTPPPSPTPPPSPSPLGDPMY 197

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>PHLPP_MOUSE (Q8CHE4) PH domain leucine-rich repeat-containing protein|
           phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat
           protein phosphatase) (Pleckstrin homology
           domain-containing family E protein 1) (Suprachiasmatic
           nucleus circadian oscillatory
          Length = 1687

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 9/40 (22%)
 Frame = +3

Query: 9   APPASSPVP---------QISPDPRRISPGRTTPAGEGGP 101
           APPA  P+P         +ISP P   SPG     G G P
Sbjct: 266 APPADLPLPGGAWTRCAPRISPAPSDSSPGELFAGGPGSP 305

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>SPAST_MOUSE (Q9QYY8) Spastin|
          Length = 614

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 3   RLAPPASSPVPQISPDPRRISPGRTTPAGEGGPL 104
           R  PPA+ P P   P P   SP +  P+    PL
Sbjct: 22  RPPPPAAVPAPAAGPAPAAGSPPKRNPSSFSSPL 55

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>LEG3_MOUSE (P16110) Galectin-3 (Galactose-specific lectin 3) (Mac-2 antigen)|
           (IgE-binding protein) (35 kDa lectin)
           (Carbohydrate-binding protein 35) (CBP 35)
           (Laminin-binding protein) (Lectin L-29) (L-34
           galactoside-binding lectin)
          Length = 263

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 17/51 (33%), Positives = 19/51 (37%)
 Frame = +3

Query: 9   APPASSPVPQISPDPRRISPGRTTPAGEGGPLAAAMYMAYGWPQSIPLDPG 161
           APP + P       P    PG T P    GP A   Y     P + P  PG
Sbjct: 56  APPGAYP----GQAPPSAYPGPTAPGAYPGPTAPGAYPGQPAPGAFPGQPG 102

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>CXA3_SHEEP (Q9TU17) Gap junction alpha-3 protein (Connexin-44) (Cx44)|
          Length = 412

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
 Frame = +3

Query: 3   RLAPPASSPVPQISPDPRRISPGRTTPA-----GEGGPLAAAMYMAYGWPQSIPLDPGES 167
           + +PPAS+P    +  P++  PG    +     GEG   A  ++     P   P DPG S
Sbjct: 339 KASPPASTPPAAPAGGPQQFLPGGAAGSSGDSDGEGAVTAVELHA----PPEPPADPGRS 394

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>MECT1_MOUSE (Q68ED7) Mucoepidermoid carcinoma translocated protein 1 homolog|
          Length = 630

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +3

Query: 12  PPASSPVPQISPDPRRISPGRTTPAGEGGPLAAAMYMAYGWPQSIPL 152
           PP   PV Q  P P ++S G      +GGPL  +  +  G PQ  PL
Sbjct: 369 PPPPPPVSQQQPPPPQVSVG----LPQGGPLLPSASLTRG-PQLPPL 410

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>MYSC_ACACA (P10569) Myosin IC heavy chain|
          Length = 1168

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
 Frame = +3

Query: 6    LAPPASSPVPQISPDPRRISPG----RTTPAGEGGPLAAAMYMAYGWP 137
            L P A++P P  S  PR   PG    R  P G  GP+      A G P
Sbjct: 1032 LIPRAAAPAPGPSGGPRPAPPGGKSGRAAPMGGPGPMRGRGGPAPGGP 1079

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>NPLP3_DROME (Q9VV28) Neuropeptide-like 3 precursor [Contains: SHA-peptide;|
           VVI-amide peptide]
          Length = 90

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +3

Query: 6   LAPPASSPVPQISPDPRRISPGRTTPAGEGGPLAAAMYMAYGWPQSIPLDPG 161
           LA  A +P P  +P P  I PG   P   G  +  +  +A   PQ + + PG
Sbjct: 13  LAAAAPAPAPAPAPAPGLIGPGIVAPGIWGPTVVGSPLLA---PQVVSVVPG 61

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>PHR_SYNY3 (Q55081) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme)
          Length = 488

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +3

Query: 15  PASSPVPQISPDPRRISPGRTTPAGEGGPLAAAMYMAYG--WPQSIPLDPGE 164
           P +SPVP    D + ++P          PLA       G  W Q +PL PGE
Sbjct: 174 PKTSPVPT-PKDLQGLTPAEKEKLAPLEPLAIPQLADLGFIWDQPLPLTPGE 224

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>PDI_ALTAL (Q00002) Protein disulfide-isomerase (EC 5.3.4.1) (PDI) (Allergen|
           Alt a 4) (Fragment)
          Length = 436

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 17/39 (43%), Positives = 18/39 (46%)
 Frame = +3

Query: 21  SSPVPQISPDPRRISPGRTTPAGEGGPLAAAMYMAYGWP 137
           SSP P +   PR      T   GE GP   A YMA G P
Sbjct: 90  SSPRPSMRTYPRLRKVASTPLIGEVGPETYAGYMAAGIP 128

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>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 19/53 (35%), Positives = 22/53 (41%)
 Frame = +3

Query: 9    APPASSPVPQISPDPRRISPGRTTPAGEGGPLAAAMYMAYGWPQSIPLDPGES 167
            AP A  PV    P  +    G T PAG  GP+  A       PQ    D GE+
Sbjct: 1039 APGAPGPV---GPAGKNGDRGETGPAGPAGPIGPAGARGPAGPQGPRGDKGET 1088

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>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 19/53 (35%), Positives = 22/53 (41%)
 Frame = +3

Query: 9    APPASSPVPQISPDPRRISPGRTTPAGEGGPLAAAMYMAYGWPQSIPLDPGES 167
            AP A  PV    P  +    G T PAG  GP+  A       PQ    D GE+
Sbjct: 1039 APGAPGPV---GPAGKNGDRGETGPAGPAGPIGPAGARGPAGPQGPRGDKGET 1088

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>KAO1_HORVU (Q9AXH9) Ent-kaurenoic acid oxidase 1 (EC 1.14.13.79) (gpr5)|
          Length = 499

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 33  PQISPDPRRISPGRTTPAGEGGPLAAAMYMAYG 131
           PQ+ PDP++  P R     EG P  A  ++ +G
Sbjct: 409 PQVYPDPKKFDPSR----WEGPPPRAGTFLPFG 437

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>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +3

Query: 6   LAPPASSPVPQISPDPR---RISPGRTTPAGEG 95
           L PPA SP+PQ  P P    + S  + TP  +G
Sbjct: 496 LGPPAGSPLPQRLPSPTAAPQQSASQATPVTQG 528

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>GUNA_MICBI (P26414) Endoglucanase A precursor (EC 3.2.1.4)|
           (Endo-1,4-beta-glucanase) (Cellulase)
          Length = 456

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
 Frame = +3

Query: 9   APPASSPVPQIS---PDPRRISPGRTTPAGEGGPLAAAMYMAYG----WP 137
           APP  SP P  S   P P +  PG  +P+    P   A    Y     WP
Sbjct: 322 APPTYSPSPTPSTPSPSPSQSDPGSPSPSPSQPPAGRACEATYALVNQWP 371

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>RARA_MOUSE (P11416) Retinoic acid receptor alpha (RAR-alpha)|
          Length = 462

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 6   LAPPASSPVPQISPDPRRISPGRTTP 83
           LAPP  S  P +SP   R SP   +P
Sbjct: 437 LAPPPGSCSPSLSPSSHRSSPATQSP 462

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>GAB2_RAT (Q9EQH1) GRB2-associated binding protein 2 (GRB2-associated binder|
           2)
          Length = 665

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 6   LAPPASSPVPQISPDPRRISPGRTTPAGEGGPLAAA 113
           +APP   P P  +  PR  SP +  P GE     AA
Sbjct: 346 IAPPPRPPKPSQAETPRWGSPQQKPPIGENSRSVAA 381

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>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)|
          Length = 704

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +3

Query: 6   LAPPASSPVPQISPDPR---RISPGRTTPAGEG 95
           L PPA SP+PQ  P P    + S  + TP  +G
Sbjct: 494 LGPPAGSPLPQRLPSPTAAPQQSASQATPMTQG 526

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>SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)|
          Length = 415

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 6   LAPPASSPVPQISPDPRRISPGRTTPAGEGGPLAAA 113
           L PPA SP+PQ  P P   +     P  +  PL+ A
Sbjct: 224 LGPPAGSPLPQRLPSP---TSAPQQPVSQAQPLSQA 256

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>CBK1_EMENI (P0C1B1) Serine/threonine-protein kinase cbk1 (EC 2.7.11.1)|
          Length = 884

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 21  SSPVPQISPDPRRISPGRTTPAG 89
           SSPV  +S  P  +SPG   P+G
Sbjct: 213 SSPVDSVSTAPTSVSPGSLAPSG 235

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>PRRT1_HUMAN (Q99946) Proline-rich transmembrane protein 1|
          Length = 306

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 12  PPASSPVPQISPDPRRISPGRTTP--AGEGGPLAAAMYMAYGWP 137
           PPA++  P  +P     +PG   P  AG  G L    Y+A G+P
Sbjct: 126 PPAAAAPPPPAPAQTAQAPGFVVPTHAGTVGTLPLGGYVAPGYP 169

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>ODP2_RHIME (Q9R9N3) Dihydrolipoyllysine-residue acetyltransferase component of|
           pyruvate dehydrogenase complex (EC 2.3.1.12) (E2)
           (Dihydrolipoamide acetyltransferase component of
           pyruvate dehydrogenase complex)
          Length = 447

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 15  PASSPVPQISPDPRRISPGRTTPA-GEG 95
           PA++P P  +P P+  +P    PA GEG
Sbjct: 111 PAAAPAPAAAPAPQAAAPASPAPADGEG 138

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>FTSH_MYCTU (P0A4V8) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 760

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 12  PPASSPVPQISPDPRRISPGRTTPAGEGGP 101
           PP SS  P  S +P    PG+  P G+  P
Sbjct: 710 PPRSSHRPSYSGEPAPTYPGQPYPTGQADP 739

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>FTSH_MYCBO (P0A4V9) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 760

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 12  PPASSPVPQISPDPRRISPGRTTPAGEGGP 101
           PP SS  P  S +P    PG+  P G+  P
Sbjct: 710 PPRSSHRPSYSGEPAPTYPGQPYPTGQADP 739

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>FHAB_BORPE (P12255) Filamentous hemagglutinin|
          Length = 3590

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 15   PASSPVPQISPDPRRISPGRTTP 83
            PA  P P+  P   R  PG+TTP
Sbjct: 3470 PAPKPKPKPKPKAERPKPGKTTP 3492

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>CBP_MOUSE (P45481) CREB-binding protein (EC 2.3.1.48)|
          Length = 2441

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +3

Query: 12   PPASSPVPQI--SPDPRRISPGRTTP 83
            PP SSP P+I   P P  +SP   TP
Sbjct: 2357 PPHSSPSPRIQPQPSPHHVSPQTGTP 2382

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>SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 6   LAPPASSPVPQISPDPRRISPGRTTPAGEGGPL 104
           L PPA SP+PQ  P P  +      PA +  P+
Sbjct: 496 LGPPAGSPLPQRLPSPTSVP---QQPASQATPM 525

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>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2157

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 12  PPASSPVPQISP-DPRRISPGRTTP 83
           PPAS+P P+  P +P +  P ++TP
Sbjct: 535 PPASAPTPEKEPEEPAQAPPAQSTP 559


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,908,830
Number of Sequences: 219361
Number of extensions: 365577
Number of successful extensions: 2697
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 2178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2668
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result