ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl47c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197170.1| Oryza sativa (japonica cultivar-group) putative... 66 9e-08
2gb|AC068923.12| Oryza sativa chromosome 10 BAC OSJNBa0017E08 gen... 66 9e-08
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 66 9e-08
4dbj|AK120408.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 9e-08
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 66 9e-08
6gb|DQ378290.1| Drosophila virilis strain Tucson 15010-1001.10 fo... 42 1.3
7gb|AF003383.1| Caenorhabditis elegans cosmid ZC250, complete seq... 40 5.2
8gb|AC104434.2| Homo sapiens chromosome 3 clone RP11-625B23, comp... 40 5.2
9gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete seq... 40 5.2
10gb|AC104322.4| Oryza sativa chromosome 10 BAC OSJNBb0005F01 geno... 40 5.2
11emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, ... 40 5.2
12gb|AC105377.12| Oryza sativa chromosome 10 BAC OSJNBa0034E15 gen... 40 5.2
13dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, compl... 40 5.2
14gb|AC104184.2| Homo sapiens chromosome 3 clone RP11-188P20, comp... 40 5.2
15dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.2 
>ref|NM_197170.1| Oryza sativa (japonica cultivar-group) putative dentin phosphoryn
           protein (OSJNBa0017E08.7), mRNA
          Length = 3024

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 289 atgatcgtgcgcacctacggccgcagatcccgc 321
           |||||||||||||||||||||||||||||||||
Sbjct: 1   atgatcgtgcgcacctacggccgcagatcccgc 33
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>gb|AC068923.12| Oryza sativa chromosome 10 BAC OSJNBa0017E08 genomic sequence, complete
              sequence
          Length = 136120

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 33/33 (100%)
 Strand = Plus / Minus

                                               
Query: 289    atgatcgtgcgcacctacggccgcagatcccgc 321
              |||||||||||||||||||||||||||||||||
Sbjct: 115801 atgatcgtgcgcacctacggccgcagatcccgc 115769



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 155    cccaaatccggatcagccgca 175
              |||||||||||||||||||||
Sbjct: 116016 cccaaatccggatcagccgca 115996
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                                 
Query: 289      atgatcgtgcgcacctacggccgcagatcccgc 321
                |||||||||||||||||||||||||||||||||
Sbjct: 18390892 atgatcgtgcgcacctacggccgcagatcccgc 18390924



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 155      cccaaatccggatcagccgca 175
                |||||||||||||||||||||
Sbjct: 18390677 cccaaatccggatcagccgca 18390697



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 106     ccagctccccgtccccgaat 125
               ||||||||||||||||||||
Sbjct: 6205645 ccagctccccgtccccgaat 6205664
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>dbj|AK120408.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091M08, full
           insert sequence
          Length = 3407

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 289 atgatcgtgcgcacctacggccgcagatcccgc 321
           |||||||||||||||||||||||||||||||||
Sbjct: 354 atgatcgtgcgcacctacggccgcagatcccgc 386



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 155 cccaaatccggatcagccgca 175
           |||||||||||||||||||||
Sbjct: 139 cccaaatccggatcagccgca 159
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                                 
Query: 289      atgatcgtgcgcacctacggccgcagatcccgc 321
                |||||||||||||||||||||||||||||||||
Sbjct: 18400945 atgatcgtgcgcacctacggccgcagatcccgc 18400977



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 155      cccaaatccggatcagccgca 175
                |||||||||||||||||||||
Sbjct: 18400730 cccaaatccggatcagccgca 18400750



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 106     ccagctccccgtccccgaat 125
               ||||||||||||||||||||
Sbjct: 6207231 ccagctccccgtccccgaat 6207250
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>gb|DQ378290.1| Drosophila virilis strain Tucson 15010-1001.10 fosmid 10J19, complete
            sequence
          Length = 34783

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 252  gcgcaggcgcagctacccgcagcagcagc 280
            ||||||| ||||| |||||||||||||||
Sbjct: 7302 gcgcaggtgcagcgacccgcagcagcagc 7274
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>gb|AF003383.1| Caenorhabditis elegans cosmid ZC250, complete sequence
          Length = 34372

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 150  gaatccccaaatccggatca 169
            ||||||||||||||||||||
Sbjct: 6965 gaatccccaaatccggatca 6946
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>gb|AC104434.2| Homo sapiens chromosome 3 clone RP11-625B23, complete sequence
          Length = 192758

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   cgcgcaggcgcagctacccg 270
             ||||||||||||||||||||
Sbjct: 25066 cgcgcaggcgcagctacccg 25047
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>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence
          Length = 3281944

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 271     cagcagcagcgagtcgccat 290
               ||||||||||||||||||||
Sbjct: 2756836 cagcagcagcgagtcgccat 2756855
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>gb|AC104322.4| Oryza sativa chromosome 10 BAC OSJNBb0005F01 genomic sequence, complete
              sequence
          Length = 151428

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 106    ccagctccccgtccccgaat 125
              ||||||||||||||||||||
Sbjct: 141050 ccagctccccgtccccgaat 141069
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>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 271     cagcagcagcgagtcgccat 290
               ||||||||||||||||||||
Sbjct: 3912896 cagcagcagcgagtcgccat 3912877
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>gb|AC105377.12| Oryza sativa chromosome 10 BAC OSJNBa0034E15 genomic sequence,
            complete sequence
          Length = 100285

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 106  ccagctccccgtccccgaat 125
            ||||||||||||||||||||
Sbjct: 3203 ccagctccccgtccccgaat 3222
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>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence
          Length = 3354505

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 271     cagcagcagcgagtcgccat 290
               ||||||||||||||||||||
Sbjct: 1600139 cagcagcagcgagtcgccat 1600120
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>gb|AC104184.2| Homo sapiens chromosome 3 clone RP11-188P20, complete sequence
          Length = 143034

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 251   cgcgcaggcgcagctacccg 270
             ||||||||||||||||||||
Sbjct: 10157 cgcgcaggcgcagctacccg 10176
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 39      acaacaatctgacggtcgag 58
               ||||||||||||||||||||
Sbjct: 4154993 acaacaatctgacggtcgag 4154974


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,170,448
Number of Sequences: 3902068
Number of extensions: 2170448
Number of successful extensions: 33785
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33637
Number of HSP's gapped (non-prelim): 148
length of query: 386
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 364
effective length of database: 17,147,199,772
effective search space: 6241580717008
effective search space used: 6241580717008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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