ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl47c09 |
|---|---|
| Clone Library Name | barley_pub |
>COPB2_MOUSE (O55029) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| (p102) Length = 905 Score = 81.3 bits (199), Expect = 5e-16 Identities = 34/48 (70%), Positives = 44/48 (91%) Frame = +1 Query: 241 MPLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSETLCIWDYQTQT 384 MPLRL+IKRK RS+RVKSVDLHPTEPW+LASLY+ ++C+W+++TQT Sbjct: 1 MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQT 48 Score = 32.0 bits (71), Expect = 0.37 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +1 Query: 253 LEIKRKFAQRSERVKSVDLHPTEPWILASLYSETLCIWDY 372 LE F S+ ++ + +HPT+P+IL S + +WD+ Sbjct: 89 LERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDW 128
>COPB2_HUMAN (P35606) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| (p102) Length = 905 Score = 79.3 bits (194), Expect = 2e-15 Identities = 33/47 (70%), Positives = 43/47 (91%) Frame = +1 Query: 244 PLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSETLCIWDYQTQT 384 PLRL+IKRK RS+RVKSVDLHPTEPW+LASLY+ ++C+W+++TQT Sbjct: 1 PLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQT 47 Score = 32.0 bits (71), Expect = 0.37 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +1 Query: 253 LEIKRKFAQRSERVKSVDLHPTEPWILASLYSETLCIWDY 372 LE F S+ ++ + +HPT+P+IL S + +WD+ Sbjct: 88 LERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDW 127
>COPB2_BOVIN (P35605) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| (p102) Length = 905 Score = 79.3 bits (194), Expect = 2e-15 Identities = 33/47 (70%), Positives = 43/47 (91%) Frame = +1 Query: 244 PLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSETLCIWDYQTQT 384 PLRL+IKRK RS+RVKSVDLHPTEPW+LASLY+ ++C+W+++TQT Sbjct: 1 PLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQT 47 Score = 32.0 bits (71), Expect = 0.37 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +1 Query: 253 LEIKRKFAQRSERVKSVDLHPTEPWILASLYSETLCIWDY 372 LE F S+ ++ + +HPT+P+IL S + +WD+ Sbjct: 88 LERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDW 127
>COPB2_RAT (O35142) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| (p102) Length = 904 Score = 77.0 bits (188), Expect = 1e-14 Identities = 32/47 (68%), Positives = 42/47 (89%) Frame = +1 Query: 244 PLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSETLCIWDYQTQT 384 PLRL+IKRK S+RVKSVDLHPTEPW+LASLY+ ++C+W+++TQT Sbjct: 1 PLRLDIKRKLTAMSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQT 47 Score = 32.0 bits (71), Expect = 0.37 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +1 Query: 253 LEIKRKFAQRSERVKSVDLHPTEPWILASLYSETLCIWDY 372 LE F S+ ++ + +HPT+P+IL S + +WD+ Sbjct: 88 LERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDW 127
>COPB2_CAEEL (Q20168) Probable coatomer subunit beta' (Beta'-coat protein)| (Beta'-COP) Length = 1000 Score = 70.1 bits (170), Expect = 1e-12 Identities = 30/48 (62%), Positives = 39/48 (81%) Frame = +1 Query: 241 MPLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSETLCIWDYQTQT 384 MPLRL++KRK RS+RVK VDLHP E W+LA+LY+ + IW+Y+TQT Sbjct: 1 MPLRLDVKRKLLARSDRVKCVDLHPVETWLLAALYNGNVHIWNYETQT 48 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/43 (27%), Positives = 26/43 (60%) Frame = +1 Query: 253 LEIKRKFAQRSERVKSVDLHPTEPWILASLYSETLCIWDYQTQ 381 LE +F S+ ++S+ +HPT P++++S + +WD+ + Sbjct: 89 LERVHQFEAHSDYLRSLVVHPTLPYVISSSDDMLVKMWDWDNK 131
>COPB2_YEAST (P41811) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| Length = 889 Score = 63.9 bits (154), Expect = 9e-11 Identities = 24/45 (53%), Positives = 37/45 (82%) Frame = +1 Query: 247 LRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSETLCIWDYQTQ 381 ++L+IK+ F+ RS+RVK +D HPTEPW+L +LYS + +W+Y+TQ Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ 45 Score = 29.6 bits (65), Expect = 1.8 Identities = 9/35 (25%), Positives = 23/35 (65%) Frame = +1 Query: 271 FAQRSERVKSVDLHPTEPWILASLYSETLCIWDYQ 375 F + ++S+ +HPT+P++L+ T+ +W+++ Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
>COPB2_SCHPO (O42937) Probable coatomer subunit beta' (Beta'-coat protein)| (Beta'-COP) Length = 796 Score = 61.6 bits (148), Expect = 4e-10 Identities = 25/46 (54%), Positives = 35/46 (76%) Frame = +1 Query: 247 LRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSETLCIWDYQTQT 384 +RL+ +RK +ERVK+VD HPTEPW++AS Y+ + IW+Y TQT Sbjct: 2 MRLDFQRKLLSHTERVKAVDFHPTEPWVIASHYNGQVGIWNYNTQT 47
>COPB2_DROME (O62621) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| Length = 914 Score = 60.8 bits (146), Expect = 7e-10 Identities = 26/47 (55%), Positives = 36/47 (76%) Frame = +1 Query: 241 MPLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSETLCIWDYQTQ 381 MPL+L+IKR+ RS+RVK VDLHP EPW+L +LY+ + I +Y+ Q Sbjct: 1 MPLKLDIKRRLTSRSDRVKCVDLHPAEPWMLCALYNGHVHIMNYENQ 47 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/41 (26%), Positives = 23/41 (56%) Frame = +1 Query: 253 LEIKRKFAQRSERVKSVDLHPTEPWILASLYSETLCIWDYQ 375 LE F S+ ++ + +HPT+P +L S + +W+++ Sbjct: 89 LEKVHSFEAHSDYLRCIAVHPTQPLVLTSSDDMLIKLWNWE 129
>COPA_YEAST (P53622) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| Length = 1201 Score = 48.1 bits (113), Expect = 5e-06 Identities = 17/44 (38%), Positives = 29/44 (65%) Frame = +1 Query: 253 LEIKRKFAQRSERVKSVDLHPTEPWILASLYSETLCIWDYQTQT 384 +++ KF +S R K + HP+ PW+L +L+S T+ +WDY+ T Sbjct: 1 MKMLTKFESKSTRAKGIAFHPSRPWVLVALFSSTIQLWDYRMGT 44 Score = 28.1 bits (61), Expect = 5.4 Identities = 10/30 (33%), Positives = 20/30 (66%) Frame = +1 Query: 292 VKSVDLHPTEPWILASLYSETLCIWDYQTQ 381 V++V H PWI+++ +T+ IW++Q + Sbjct: 98 VRTVFFHRELPWIISASDDQTIRIWNWQNR 127
>COPA_HUMAN (P53621) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related peptide); Proxenin] Length = 1224 Score = 45.1 bits (105), Expect = 4e-05 Identities = 18/39 (46%), Positives = 25/39 (64%) Frame = +1 Query: 268 KFAQRSERVKSVDLHPTEPWILASLYSETLCIWDYQTQT 384 KF +S RVK + HP PWIL SL++ + +WDY+ T Sbjct: 4 KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCT 42 Score = 29.3 bits (64), Expect = 2.4 Identities = 9/31 (29%), Positives = 21/31 (67%) Frame = +1 Query: 292 VKSVDLHPTEPWILASLYSETLCIWDYQTQT 384 +++ H PWIL++ +T+ +W++Q++T Sbjct: 96 IRTTFFHHEYPWILSASDDQTIRVWNWQSRT 126
>COPA_BOVIN (Q27954) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related peptide); Proxenin] Length = 1224 Score = 45.1 bits (105), Expect = 4e-05 Identities = 18/39 (46%), Positives = 25/39 (64%) Frame = +1 Query: 268 KFAQRSERVKSVDLHPTEPWILASLYSETLCIWDYQTQT 384 KF +S RVK + HP PWIL SL++ + +WDY+ T Sbjct: 4 KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCT 42 Score = 29.3 bits (64), Expect = 2.4 Identities = 9/31 (29%), Positives = 21/31 (67%) Frame = +1 Query: 292 VKSVDLHPTEPWILASLYSETLCIWDYQTQT 384 +++ H PWIL++ +T+ +W++Q++T Sbjct: 96 IRTTFFHHEYPWILSASDDQTIRVWNWQSRT 126
>COPA_CANFA (P40765) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related peptide); Proxenin] (Fragment) Length = 35 Score = 35.4 bits (80), Expect = 0.034 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = +1 Query: 268 KFAQRSERVKSVDLHPTEPWILASLYS 348 KF +S RVK + HP PWIL SL++ Sbjct: 4 KFETKSARVKGLSFHPKRPWILTSLHN 30
>Y143_SYNY3 (P74442) Hypothetical WD-repeat protein slr0143| Length = 1191 Score = 31.2 bits (69), Expect = 0.63 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +1 Query: 277 QRSERVKSVDLHPTEPWILASLYSETLCIWDY 372 QR E ++SV LHPT P + A L +W++ Sbjct: 995 QRKEPIRSVSLHPTLPQLAAGDEQGNLTLWNF 1026
>KAD_METCA (Q606F1) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase)| Length = 214 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/41 (43%), Positives = 24/41 (58%) Frame = +3 Query: 249 QVGDQEEVRAAVGEGQVGGSAPHRAMDPGELVLGDSLHLGL 371 Q+ + +RAAV EG G + MD G+LV DS+ LGL Sbjct: 28 QISTGDMLRAAVREGTPLGMEAKKIMDAGQLV-SDSIILGL 67
>HAT2_YARLI (Q6C7Q4) Histone acetyltransferase type B subunit 2 (EC 2.3.1.48)| Length = 452 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%) Frame = +1 Query: 283 SERVKSVDLHPTEPWILASLYSETLC-IW 366 S R+ D HPT PW++AS + + +W Sbjct: 403 SSRISDFDWHPTLPWVIASAAEDNVIQVW 431
>SKB15_SCHPO (O74453) Shk1 kinase-binding protein 15| Length = 341 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/38 (31%), Positives = 23/38 (60%) Frame = +1 Query: 256 EIKRKFAQRSERVKSVDLHPTEPWILASLYSETLCIWD 369 +I +F +RVKSV +P + +++ + ++CIWD Sbjct: 230 KILHEFTAHKKRVKSV--YPVDDYLITASSDGSVCIWD 265
>TBX6_MOUSE (P70327) T-box transcription factor TBX6 (T-box protein 6)| Length = 540 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +3 Query: 291 GQVGGSAPHRAMDPGELVLGDSLHLGLP 374 G + S P +A PG+L+L LH+G P Sbjct: 317 GDIRDSDPEQAPTPGKLLLPQLLHVGAP 344
>EMAP_LYTVA (Q9Y1C1) 77 kDa echinoderm microtubule-associated protein| (Fragment) Length = 664 Score = 28.1 bits (61), Expect = 5.4 Identities = 10/34 (29%), Positives = 19/34 (55%) Frame = +1 Query: 283 SERVKSVDLHPTEPWILASLYSETLCIWDYQTQT 384 +E + + LHPT+ L Y + + +WD++ T Sbjct: 392 TEELWGLALHPTQGMFLTCGYDKNVILWDFEQHT 425
>VL2_HPV58 (P26538) Minor capsid protein L2| Length = 472 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = +3 Query: 6 NSHKTPSYSAPCVISPPTPLRSSTEL 83 ++H PS++ P V+ PP P +S L Sbjct: 156 STHLNPSFTEPSVLRPPAPAEASGHL 181
>YZLL_CAEEL (Q93847) Hypothetical WD-repeat protein K04G11.4| Length = 395 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = +1 Query: 259 IKRKFAQRSERVKSVDLHPTEPWILASLYSETLCIWDYQ 375 +K + + V P +ILAS + TL +WDYQ Sbjct: 267 VKTLIDEEHPPITHVKFSPNGKYILASNLNNTLKLWDYQ 305
>PER1_MOUSE (O35973) Period circadian protein 1 (Circadian pacemaker protein| Rigui) (mPER) (M-Rigui) Length = 1291 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +3 Query: 12 HKTPSYSAPCVISPPTPLRSS 74 H+TP PC +S P+P+ SS Sbjct: 844 HQTPRPETPCYVSHPSPVPSS 864
>WDR37_HUMAN (Q9Y2I8) WD-repeat protein 37| Length = 494 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = +1 Query: 268 KFAQRSERVKSVDLHPTEPWILASLYSETLCIWDYQTQ 381 K+A V S+ HP+E L + +T IW Y Q Sbjct: 194 KYAGHVGSVNSIKFHPSEQLALTASGDQTAHIWRYAVQ 231
>PER1_RAT (Q8CHI5) Period circadian protein 1 (rPER1) (Fragment)| Length = 1244 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +3 Query: 12 HKTPSYSAPCVISPPTPLRSS 74 H+TP PC +S P+P+ SS Sbjct: 841 HQTPRPETPCYVSHPSPVPSS 861
>PER1_HUMAN (O15534) Period circadian protein 1 (Circadian pacemaker protein| Rigui) (hPER) Length = 1290 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +3 Query: 12 HKTPSYSAPCVISPPTPLRSST 77 H+ P APC +S P+P+ ST Sbjct: 845 HQNPRAEAPCYVSHPSPVPPST 866 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,504,061 Number of Sequences: 219361 Number of extensions: 330117 Number of successful extensions: 1534 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 1439 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1534 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
