ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl47c08 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 200 bits (508), Expect = 1e-51 Identities = 99/101 (98%), Positives = 101/101 (100%) Frame = +2 Query: 110 MLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGRGVTCQLISST 289 MLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLG+GVTCQLISST Sbjct: 1 MLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISST 60 Query: 290 AVDQDNGGRGEVGAEAELEQWVTSLPSLTTGESKFGLTFDW 412 AVDQDNGGRG+VGAEAELEQWVTSLPSLTTGESKFGLTFDW Sbjct: 61 AVDQDNGGRGKVGAEAELEQWVTSLPSLTTGESKFGLTFDW 101
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 172 bits (436), Expect = 3e-43 Identities = 82/101 (81%), Positives = 96/101 (95%), Gaps = 1/101 (0%) Frame = +2 Query: 113 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGRGVTCQLISSTA 292 +LGG+IDT+TG++K +RLKGTVVLMRKNVLDLNDFGAT+IDG+GEFLG+GVTCQLISSTA Sbjct: 1 MLGGIIDTITGSSKQSRLKGTVVLMRKNVLDLNDFGATVIDGLGEFLGKGVTCQLISSTA 60 Query: 293 VDQDNGGRGEVGAEAELEQWVT-SLPSLTTGESKFGLTFDW 412 VD +NG RG+VGAEA LEQW+T SLPSLTTGES+FG+TFDW Sbjct: 61 VDPNNGNRGKVGAEASLEQWLTSSLPSLTTGESRFGVTFDW 101
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 159 bits (402), Expect = 2e-39 Identities = 76/100 (76%), Positives = 89/100 (89%) Frame = +2 Query: 113 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGRGVTCQLISSTA 292 +LGG+I LTG NK+ARLKG++VLMRKN LD+NDFGAT+IDGI EFLGRGVTCQL+SS+ Sbjct: 1 MLGGIIGGLTG-NKNARLKGSLVLMRKNALDINDFGATVIDGISEFLGRGVTCQLVSSSL 59 Query: 293 VDQDNGGRGEVGAEAELEQWVTSLPSLTTGESKFGLTFDW 412 VD +NG RG VG EA LEQW+TSLPSLTTGESKFG+TF+W Sbjct: 60 VDPNNGNRGRVGTEASLEQWLTSLPSLTTGESKFGVTFEW 99
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 106 bits (265), Expect = 2e-23 Identities = 51/103 (49%), Positives = 70/103 (67%), Gaps = 3/103 (2%) Frame = +2 Query: 113 LLGGLIDTLTGANKSA---RLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGRGVTCQLIS 283 + G L D LTG ++KGTVVLM+KNVLD NDF A+ +D + EFLG +T +L+S Sbjct: 1 MFGELRDLLTGGGNETTTKKVKGTVVLMKKNVLDFNDFNASFLDRLHEFLGNKITLRLVS 60 Query: 284 STAVDQDNGGRGEVGAEAELEQWVTSLPSLTTGESKFGLTFDW 412 S D +NG +G++G A LE W+T++ SLT GES F +TFD+ Sbjct: 61 SDVTDSENGSKGKLGKAAHLEDWITTITSLTAGESAFKVTFDY 103
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 105 bits (262), Expect = 4e-23 Identities = 51/100 (51%), Positives = 71/100 (71%) Frame = +2 Query: 113 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGRGVTCQLISSTA 292 +LGGL D LTG N + ++KG VLM + +LD DF A+++D + E G +TCQL+S+T Sbjct: 1 MLGGLKDKLTGKNGN-KIKGLAVLMSRKLLDPRDFTASLLDNVHEVFGNSITCQLVSATV 59 Query: 293 VDQDNGGRGEVGAEAELEQWVTSLPSLTTGESKFGLTFDW 412 DQ+N GRG VG+EA LEQ +T LPS++ GESK + F+W Sbjct: 60 ADQNNEGRGIVGSEANLEQGLTDLPSVSQGESKLTVRFNW 99
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 93.6 bits (231), Expect = 2e-19 Identities = 46/101 (45%), Positives = 69/101 (68%) Frame = +2 Query: 110 MLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGRGVTCQLISST 289 M LGG++D + G + ++KG V+LM+KNVLD + GA+++DGI + LG+ V+ QLIS Sbjct: 1 MSLGGIVDAILGKDDRPKVKGRVILMKKNVLDFINIGASVVDGISDLLGQKVSIQLISG- 59 Query: 290 AVDQDNGGRGEVGAEAELEQWVTSLPSLTTGESKFGLTFDW 412 +V+ D G G++ A LE W+T + +T GES F +TFDW Sbjct: 60 SVNYD-GLEGKLSNPAYLESWLTDITPITAGESTFSVTFDW 99
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 93.2 bits (230), Expect = 2e-19 Identities = 49/107 (45%), Positives = 69/107 (64%), Gaps = 6/107 (5%) Frame = +2 Query: 110 MLLGGLIDTLTGANKSA----RLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGR--GVTC 271 M + G D LTG NK A R++GT VL++K+VL L DF A+++DG+ LG GV Sbjct: 1 MQVQGFFDRLTGRNKEAWKEGRIRGTAVLVKKDVLGLGDFHASLLDGVHNILGHKEGVAF 60 Query: 272 QLISSTAVDQDNGGRGEVGAEAELEQWVTSLPSLTTGESKFGLTFDW 412 +L+S+TA D NGGRG++G A LE+ V ++ S GES F + F+W Sbjct: 61 RLVSATARDPSNGGRGKLGKPAHLEELVVTMKSTAAGESVFRVAFEW 107
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 83.2 bits (204), Expect = 2e-16 Identities = 46/100 (46%), Positives = 63/100 (63%) Frame = +2 Query: 113 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGRGVTCQLISSTA 292 L+GGLI G + S ++KGTVV+M+KN LD D ++ D I E LG+ V+ QLISS Sbjct: 5 LVGGLIG---GHHDSKKVKGTVVMMKKNALDFTDLAGSLTDKIFEALGQKVSFQLISSVQ 61 Query: 293 VDQDNGGRGEVGAEAELEQWVTSLPSLTTGESKFGLTFDW 412 D NG +G+ A LE ++ +L L GE+ FG+TFDW Sbjct: 62 SDPANGLQGKHSNPAYLENFLLTLTPLAAGETAFGVTFDW 101
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 77.8 bits (190), Expect = 9e-15 Identities = 48/106 (45%), Positives = 62/106 (58%), Gaps = 18/106 (16%) Frame = +2 Query: 149 NKSARLKGTVVLMRKNVLDLN--------------DFGATII----DGIGEFLGRGVTCQ 274 NK +++GTVVLMRKNVLD N D G II DG+ FLGR V+ Q Sbjct: 10 NKGHKIRGTVVLMRKNVLDFNTIVSIGGGNVHGVIDSGINIIGSTLDGLTAFLGRSVSLQ 69 Query: 275 LISSTAVDQDNGGRGEVGAEAELEQWVTSLPSLTTGESKFGLTFDW 412 LIS+T D + G+G+VG + LE + SLP+L GES F + F+W Sbjct: 70 LISATKSDAN--GKGKVGKDTFLEGVLASLPTLGAGESAFNIHFEW 113
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 74.7 bits (182), Expect = 8e-14 Identities = 41/84 (48%), Positives = 56/84 (66%) Frame = +2 Query: 161 RLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGRGVTCQLISSTAVDQDNGGRGEVGAEAE 340 ++KGTVVLM KN L++N G+ + D + FLGR V+ QLIS+T D G+G+VG + Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAV-DNLNAFLGRSVSLQLISATKADAH--GKGKVGKDTF 63 Query: 341 LEQWVTSLPSLTTGESKFGLTFDW 412 LE TSLP+L GES F + F+W Sbjct: 64 LEGINTSLPTLGAGESAFNIHFEW 87
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 73.9 bits (180), Expect = 1e-13 Identities = 45/113 (39%), Positives = 66/113 (58%), Gaps = 13/113 (11%) Frame = +2 Query: 113 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLN-------------DFGATIIDGIGEFL 253 +LGGL+ ++ ++KGTVVLMRKNVL +N D + +D + FL Sbjct: 1 MLGGLL------HRGHKIKGTVVLMRKNVLHVNSVTSVGGIIGQGLDLVGSTLDTLTAFL 54 Query: 254 GRGVTCQLISSTAVDQDNGGRGEVGAEAELEQWVTSLPSLTTGESKFGLTFDW 412 GR V+ QLIS+T D + G+G++G LE +TSLP+L G+S F + F+W Sbjct: 55 GRPVSLQLISATKADAN--GKGKLGKATFLEGIITSLPTLGAGQSAFKINFEW 105
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 73.9 bits (180), Expect = 1e-13 Identities = 42/101 (41%), Positives = 60/101 (59%), Gaps = 13/101 (12%) Frame = +2 Query: 149 NKSARLKGTVVLMRKNVLDLN-------------DFGATIIDGIGEFLGRGVTCQLISST 289 N+ ++KGTVVLMRKNVLD+N D + +D + FLGR V+ QLIS+T Sbjct: 10 NRGHKIKGTVVLMRKNVLDINSLTTVGGVIGQGFDILGSTVDNLTAFLGRSVSLQLISAT 69 Query: 290 AVDQDNGGRGEVGAEAELEQWVTSLPSLTTGESKFGLTFDW 412 D G+G++G LE ++SLP+L G+S F + F+W Sbjct: 70 KPDAT--GKGKLGKATFLEGIISSLPTLGAGQSAFKIHFEW 108
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 72.0 bits (175), Expect = 5e-13 Identities = 41/91 (45%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Frame = +2 Query: 143 GANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGRGVTCQLISSTAVDQDNGGRGE 322 G + S ++KGTVV+M KNVLD D ++ I + LG+ V+ QLISS D NG +G+ Sbjct: 12 GHDDSKKVKGTVVMMNKNVLDFTDLAGSLTGKIFDVLGQKVSFQLISSVQGDPTNGLQGK 71 Query: 323 VGAEAELEQWVTSLPSLTTG-ESKFGLTFDW 412 A LE + +L LT G E+ FG+TFDW Sbjct: 72 HSNPAYLENSLFTLTPLTAGSETAFGVTFDW 102
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 68.2 bits (165), Expect = 7e-12 Identities = 41/102 (40%), Positives = 55/102 (53%), Gaps = 18/102 (17%) Frame = +2 Query: 161 RLKGTVVLMRKNVLDLNDFG------------------ATIIDGIGEFLGRGVTCQLISS 286 ++KGTVVLMRKNVLD N + +D + FLGR V QLIS+ Sbjct: 18 KIKGTVVLMRKNVLDFNSVADLTKGNVGGLIGTGLNVVGSTLDNLTAFLGRSVALQLISA 77 Query: 287 TAVDQDNGGRGEVGAEAELEQWVTSLPSLTTGESKFGLTFDW 412 T + G+G+VG + LE + SLP+L GES F + F+W Sbjct: 78 TKPLAN--GKGKVGKDTFLEGIIVSLPTLGAGESAFNIQFEW 117
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 67.0 bits (162), Expect = 2e-11 Identities = 42/107 (39%), Positives = 58/107 (54%), Gaps = 20/107 (18%) Frame = +2 Query: 152 KSARLKGTVVLMRKNVLDLNDFGA--------------------TIIDGIGEFLGRGVTC 271 + +LKGTV+LM+KNVLD+N A +IID FLGR V Sbjct: 8 RGQKLKGTVILMQKNVLDINALTAAQSPSGIIGGAFGVVGSIAGSIIDTATAFLGRSVRL 67 Query: 272 QLISSTAVDQDNGGRGEVGAEAELEQWVTSLPSLTTGESKFGLTFDW 412 +LIS+T D G+G+V EA LE +TS+P+L +S F + F+W Sbjct: 68 RLISATVADAS--GKGKVSKEAFLEGLLTSIPTLGDKQSAFSVHFEW 112
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 63.9 bits (154), Expect = 1e-10 Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 22/110 (20%) Frame = +2 Query: 149 NKSARLKGTVVLMRKNVLDLNDF------------------GATIIDGIGE----FLGRG 262 +K ++KGTVVLM KNVLD N G +++ G+ + FLGR Sbjct: 6 DKGQKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRN 65 Query: 263 VTCQLISSTAVDQDNGGRGEVGAEAELEQWVTSLPSLTTGESKFGLTFDW 412 ++ QLIS+T D G G+VG E LE+ + +LP+L + F + F+W Sbjct: 66 ISMQLISATQTD--GSGNGKVGKEVYLEKHLPTLPTLGARQDAFSIFFEW 113
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 62.0 bits (149), Expect = 5e-10 Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 22/110 (20%) Frame = +2 Query: 149 NKSARLKGTVVLMRKNVLDLNDFGAT----------------------IIDGIGEFLGRG 262 N+ ++KGTVVLM KNV D N+F +T I+DG R Sbjct: 6 NRGHKIKGTVVLMTKNVFDFNEFVSTTRGGIVGAAGGLFGAATDIVGGIVDGATAIFSRN 65 Query: 263 VTCQLISSTAVDQDNGGRGEVGAEAELEQWVTSLPSLTTGESKFGLTFDW 412 + QLIS+T D G G+VG + LE+ + SLP+L + F + F+W Sbjct: 66 IAIQLISATKT--DGLGNGKVGKQTFLEKHLPSLPNLGDRQDAFNVYFEW 113
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 59.3 bits (142), Expect = 3e-09 Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 12/99 (12%) Frame = +2 Query: 152 KSARLKGTVVLMRKNVLDLNDF---GATIIDGIG---------EFLGRGVTCQLISSTAV 295 K ++KGT+V+M+KNVLD+N G + G+G F ++ QLIS+T Sbjct: 7 KGQKIKGTMVVMQKNVLDINSITSVGGIVDQGLGFIGSAVDALTFAATKISIQLISATKA 66 Query: 296 DQDNGGRGEVGAEAELEQWVTSLPSLTTGESKFGLTFDW 412 D GG+G++G L +T LP+L GE + + F+W Sbjct: 67 D---GGKGKIGKSTNLRGKIT-LPTLGAGEQAYDVNFEW 101
>HIP1R_HUMAN (O75146) Huntingtin-interacting protein 1-related protein| (Hip1-related) (Hip 12) Length = 1068 Score = 32.0 bits (71), Expect = 0.59 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = -3 Query: 328 AHLPATAVVLVDGGGTDKLAGDAPAEELADAVDDGGAEVVEVQHVLAHEHHRALEPGALV 149 +HL A ++ +GG T LA PA+ L D + GA +E+ L + +LV Sbjct: 696 SHLAADTII--NGGATSHLAPTDPADRLIDTCRECGARALELMGQLQDQQALRHMQASLV 753 Query: 148 R-PREGVDQ 125 R P +G+ Q Sbjct: 754 RTPLQGILQ 762
>OAR_MYXXA (P38370) Protein oar precursor| Length = 1061 Score = 31.2 bits (69), Expect = 1.0 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +2 Query: 134 TLTGANKSARLKGTVVLMRKNVLDLNDFGATI 229 TL G K R +GTV+ + + +L DFGAT+ Sbjct: 261 TLEGTRKQIREEGTVITGQNQLQNLGDFGATL 292
>IPYR_MYCTU (P65746) Inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate| phospho-hydrolase) (PPase) Length = 162 Score = 30.4 bits (67), Expect = 1.7 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%) Frame = -3 Query: 289 GGTDKL----AGDAPAEELADAVDDGGAEVVEVQHVLAHEHHRALEPGALVRPREGVDQ 125 GG DK+ AGD + + D D E+ ++H H ++ LEPG V+ + VD+ Sbjct: 87 GGDDKVLCVPAGDPRWDHVQDIGDVPAFELDAIKHFFVH--YKDLEPGKFVKAADWVDR 143
>IPYR_MYCBO (P65747) Inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate| phospho-hydrolase) (PPase) Length = 162 Score = 30.4 bits (67), Expect = 1.7 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%) Frame = -3 Query: 289 GGTDKL----AGDAPAEELADAVDDGGAEVVEVQHVLAHEHHRALEPGALVRPREGVDQ 125 GG DK+ AGD + + D D E+ ++H H ++ LEPG V+ + VD+ Sbjct: 87 GGDDKVLCVPAGDPRWDHVQDIGDVPAFELDAIKHFFVH--YKDLEPGKFVKAADWVDR 143
>RPOC_CHLTR (O84316) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 30.0 bits (66), Expect = 2.3 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Frame = -3 Query: 367 RQARHPLLQLRLRAHLPATAVVLVDGGGTDKL---AGDAPAEELADAVDDGGAEVVEVQH 197 RQ LL L+ R + + + G + AGD A+A+DD G E V+++ Sbjct: 826 RQGSEELLPLKDRVYGRTVSENIYQPGDKSNVLAYAGDVLTSAQAEAIDDAGIESVKIRS 885 Query: 196 VLAHEHHRAL 167 L E R + Sbjct: 886 TLTCESRRGV 895
>RPOC_CHLTA (Q3KM48) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 30.0 bits (66), Expect = 2.3 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Frame = -3 Query: 367 RQARHPLLQLRLRAHLPATAVVLVDGGGTDKL---AGDAPAEELADAVDDGGAEVVEVQH 197 RQ LL L+ R + + + G + AGD A+A+DD G E V+++ Sbjct: 826 RQGSEELLPLKDRVYGRTVSENIYQPGDKSNVLAYAGDVLTSAQAEAIDDAGIESVKIRS 885 Query: 196 VLAHEHHRAL 167 L E R + Sbjct: 886 TLTCESRRGV 895
>RPOC_CHLCV (Q822J2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1393 Score = 28.9 bits (63), Expect = 5.0 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Frame = -3 Query: 367 RQARHPLLQLRLRAHLPATAVVLVDGGGTDKLA---GDAPAEELADAVDDGGAEVVEVQH 197 RQ LL L+ R + + + G KL GD A+ +DD G E ++++ Sbjct: 824 RQGSEELLPLKDRIYGRTVSEDIYQPGDKSKLLAKNGDVVTSAQAELIDDAGIESIKIRS 883 Query: 196 VLAHEHHRAL 167 L E R + Sbjct: 884 TLTCESRRGV 893
>SYA_PORGI (Q7MV54) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 876 Score = 28.9 bits (63), Expect = 5.0 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 17/94 (18%) Frame = +2 Query: 164 LKGTVVLMRKNVLDLNDFGATIIDGIGEF-------LGRGVTCQLISSTAVDQDNGG--- 313 L+ + L+ K + D G+T++DG+ F +T ++S + D G Sbjct: 375 LETGIRLLEKKIADNKATGSTVLDGVAAFELYDTFGFPLDLTALILSENGMTVDESGFDT 434 Query: 314 -------RGEVGAEAELEQWVTSLPSLTTGESKF 394 R A E WV L GESKF Sbjct: 435 EMQKQKERARNAAAVEAGDWVV----LREGESKF 464
>RPOC_PARUW (Q6MDM0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1388 Score = 28.9 bits (63), Expect = 5.0 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Frame = -3 Query: 367 RQARHPLLQLRLRAHLPATAVVLVDGGGTDKL---AGDAPAEELADAVDDGGAEVVEVQH 197 +Q + LL L+ R + G + KL +GD A+A+DD G E + ++ Sbjct: 824 KQGQEELLPLKDRIFGRTVCEDIYQPGDSTKLLAKSGDTLTVLQAEAIDDSGIESIRIRS 883 Query: 196 VLAHEHHRAL 167 VL E R + Sbjct: 884 VLTCETRRGV 893
>AGO2_DROME (Q9VUQ5) Argonaute 2 protein| Length = 1214 Score = 28.9 bits (63), Expect = 5.0 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 73 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 198 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 315 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 356 Score = 28.9 bits (63), Expect = 5.0 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 73 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 198 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 292 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 333 Score = 28.1 bits (61), Expect = 8.6 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 73 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 198 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 269 GGYQQRPPGQQQGGHEQGRQGQEGGYQQRPSGQQQGGHQQGR 310 Score = 28.1 bits (61), Expect = 8.6 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +1 Query: 73 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 198 G + R GQ+Q + + GG Q+RP G H Q R Sbjct: 223 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQGR 264 Score = 28.1 bits (61), Expect = 8.6 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 73 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 198 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 200 GGYQQRPPGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 241 Score = 28.1 bits (61), Expect = 8.6 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +1 Query: 73 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 198 G + R GQ+Q + + GG Q+RP G H Q R Sbjct: 177 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQGR 218 Score = 28.1 bits (61), Expect = 8.6 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 73 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 198 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 154 GGYQQRPPGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 195
>RS9_BIFLO (Q8G423) 30S ribosomal protein S9| Length = 163 Score = 28.9 bits (63), Expect = 5.0 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = -3 Query: 370 RRQARHPLLQLRLRAHLPATAVVLVDGGGTDKLAG 266 +R+ P++ L+L A +VLVDGGGT AG Sbjct: 77 QREVNSPIVLLKLEGKFDA--IVLVDGGGTTGQAG 109
>RPOC_CHLAB (Q5L5I4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1393 Score = 28.5 bits (62), Expect = 6.6 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Frame = -3 Query: 367 RQARHPLLQLRLRAHLPATAVVLVDGGGTDKLA---GDAPAEELADAVDDGGAEVVEVQH 197 RQ LL L+ R + + + G KL GD A+ +DD G E ++++ Sbjct: 824 RQGSEELLPLKDRIYGRTVSEDIYQPGDKSKLLAENGDVITSAQAELIDDAGIESIKIRS 883 Query: 196 VLAHEHHRAL 167 L E R + Sbjct: 884 TLTCESRRGV 893
>PO4F1_MOUSE (P17208) POU domain, class 4, transcription factor 1| (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Brn-3.0) Length = 421 Score = 28.5 bits (62), Expect = 6.6 Identities = 19/64 (29%), Positives = 25/64 (39%) Frame = -3 Query: 340 LRLRAHLPATAVVLVDGGGTDKLAGDAPAEELADAVDDGGAEVVEVQHVLAHEHHRALEP 161 L RA A + V G + DA + + V H H HH+ALEP Sbjct: 54 LLARAEALAAVDIAVSQGKSHPFKPDATYHTMNSVPCTSTSTVPLAHHHHHHHHHQALEP 113 Query: 160 GALV 149 G L+ Sbjct: 114 GDLL 117
>RPOC_CHLMU (Q9PK79) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 28.5 bits (62), Expect = 6.6 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Frame = -3 Query: 367 RQARHPLLQLRLRAHLPATAVVLVDGGGTDKL---AGDAPAEELADAVDDGGAEVVEVQH 197 RQ LL L+ R + + + G + AGD A+A+DD G + V+++ Sbjct: 826 RQGSEELLPLKDRIYGRTVSENVYQPGDKSNVLAYAGDVLTSSQAEAIDDAGIDSVKIRS 885 Query: 196 VLAHEHHRAL 167 L E R + Sbjct: 886 TLTCESRRGV 895
>AMPR_PSEAE (P24734) HTH-type transcriptional activator ampR| Length = 296 Score = 28.5 bits (62), Expect = 6.6 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = -3 Query: 385 LPRRQRRQARHPLLQLRLRAH 323 LPR + QARHP + LRL H Sbjct: 110 LPRLEDFQARHPFIDLRLSTH 130
>SCRT2_HUMAN (Q9NQ03) Transcriptional repressor scratch 2 (Scratch homolog 2| zinc finger protein) Length = 307 Score = 28.5 bits (62), Expect = 6.6 Identities = 15/38 (39%), Positives = 16/38 (42%) Frame = +1 Query: 73 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAH 186 G + RRGG DA G D GG R GG H Sbjct: 116 GRSRRRRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGH 153
>PO4F1_HUMAN (Q01851) POU domain, class 4, transcription factor 1| (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Oct-T1) (Homeobox/POU domain protein RDC-1) Length = 423 Score = 28.5 bits (62), Expect = 6.6 Identities = 19/64 (29%), Positives = 25/64 (39%) Frame = -3 Query: 340 LRLRAHLPATAVVLVDGGGTDKLAGDAPAEELADAVDDGGAEVVEVQHVLAHEHHRALEP 161 L RA A + V G + DA + + V H H HH+ALEP Sbjct: 54 LLARAEALAAVDIAVSQGKSHPFKPDATYHTMNSVPCTSTSTVPLAHHHHHHHHHQALEP 113 Query: 160 GALV 149 G L+ Sbjct: 114 GDLL 117
>TYCC_BREPA (O30409) Tyrocidine synthetase 3 (Tyrocidine synthetase III)| [Includes: ATP-dependent asparagine adenylase (AsnA) (Asparagine activase); ATP-dependent glutamine adenylase (GlnA) (Glutamine activase); ATP-dependent tyrosine adenylase (TyrA) (Ty Length = 6486 Score = 28.1 bits (61), Expect = 8.6 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = -3 Query: 304 VLVDGGGTDKLAGDAPAEELADAVDDGGAEVVEVQ-HVL 191 +L GG L + P+E LA ++DGG +VV VQ H+L Sbjct: 3645 ILKAGGAYLGLDPEHPSERLAYMLEDGGVKVVLVQKHLL 3683
>VIV_ORYSA (P37398) Protein viviparous homolog| Length = 728 Score = 28.1 bits (61), Expect = 8.6 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 11/56 (19%) Frame = +1 Query: 67 LVGAVKARRGGQEQ-DAAGRADRHPHGGEQE-------RPA---QGHGGAHAQERA 201 L+ VK RR QEQ +++G +H HG ++ +PA G GG + E A Sbjct: 632 LIRGVKVRRAAQEQGNSSGAVGKHKHGSPEKPGVSSNTKPAGAEDGTGGDDSPEAA 687
>Y1653_METJA (Q59047) Hypothetical UPF0064 protein MJ1653| Length = 385 Score = 28.1 bits (61), Expect = 8.6 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 7/43 (16%) Frame = +2 Query: 155 SARLKGTVVLMRKNVLDLNDFGATIIDGI-------GEFLGRG 262 SA KG +++ R N+L+ DF + I + G+FLGRG Sbjct: 13 SAIEKGNLIIPRDNILNKEDFDSIEIGEVVDIYSKRGKFLGRG 55
>WSCK_DROME (P83097) Putative tyrosine-protein kinase Wsck precursor (EC| 2.7.10.1) Length = 791 Score = 28.1 bits (61), Expect = 8.6 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = +2 Query: 122 GLIDTLTGANKSARLKGTVVLMRKNVLDLNDFG-ATIIDGIGEFLGRGVTCQLISS 286 GL+ TL G K+ +GT ++V L+DF AT G + VTC + S Sbjct: 362 GLVSTLEGVTKTMYSRGT---HDQHVTSLDDFSYATFEKGQSSVVALAVTCVIFGS 414 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,294,320 Number of Sequences: 219361 Number of extensions: 896486 Number of successful extensions: 3787 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 3566 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3757 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
