>HXA5_MOUSE (P09021) Homeobox protein Hox-A5 (Hox-1.3) (M2)|
          Length = 270

 Score = 33.5 bits (75), Expect = 0.25
 Identities = 29/79 (36%), Positives = 36/79 (45%)
 Frame = -3

Query: 364 APSGPACDSYEGGYNLGGIGAAVSAQVGKRS*LVSAA*SGQSETAAAACLSRGGKIQSTS 185
           APS P  DS+ GG N  G  +  SA  G    + S    G   TA+AA        +   
Sbjct: 107 APS-PGSDSHHGGKNSLGNSSGASANAGSTH-ISSREGVG---TASAAEEDAPASSEQAG 161

Query: 184 AASEINPAPPEIQPRFLSW 128
           A SE +PAPP  QP+   W
Sbjct: 162 AQSEPSPAPP-AQPQIYPW 179

>HXA5_HUMAN (P20719) Homeobox protein Hox-A5 (Hox-1C)|
          Length = 270

 Score = 32.3 bits (72), Expect = 0.56
 Identities = 30/84 (35%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
 Frame = -3

Query: 364 APSGPACDSYEGGYNL-----GGIGAAVSAQVGKRS*LVSAA*SGQSETAAAACLSRGGK 200
           APS P  DS+ GG N      G    A S  +  R  + +A  SG  E A A+       
Sbjct: 107 APS-PGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTA--SGAEEDAPASS------ 157

Query: 199 IQSTSAASEINPAPPEIQPRFLSW 128
            +  SA SE +PAPP  QP+   W
Sbjct: 158 -EQASAQSEPSPAPP-AQPQIYPW 179

>HXA5_RAT (P52949) Homeobox protein Hox-A5 (Hox-1.3) (Fragment)|
          Length = 233

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 25/75 (33%), Positives = 33/75 (44%)
 Frame = -3

Query: 352 PACDSYEGGYNLGGIGAAVSAQVGKRS*LVSAA*SGQSETAAAACLSRGGKIQSTSAASE 173
           P  D++ GG N  G  +  SA  G    + S    G   TA+AA        +   A SE
Sbjct: 89  PGSDTHHGGKNSLGNSSGCSANCGSTH-ISSREGVG---TASAAEEDAPASSEQAGAQSE 144

Query: 172 INPAPPEIQPRFLSW 128
            +PAPP  QP+   W
Sbjct: 145 PSPAPP-AQPQIYPW 158

>PIM1_MOUSE (P06803) Proto-oncogene serine/threonine-protein kinase Pim-1 (EC|
           2.7.11.1)
          Length = 397

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = -1

Query: 264 LAPLNPASLKXXXXRV*AGEERSSQPRRHPRS---IPRHLKFSRGS*AGVAAIESRGRRA 94
           + P  P +L        AGE    QPR+ P+S    P  L+ SR          S GRR 
Sbjct: 1   MGPAAPLALPPPALPDPAGEPARGQPRQRPQSSSDSPSALRASRSQSRNATRSLSPGRRL 60

Query: 93  SPS 85
           SPS
Sbjct: 61  SPS 63

>RCOR2_XENLA (Q6NRZ0) REST corepressor 2|
          Length = 503

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +1

Query: 124 NSSSRTAAEFQVARD*SRMPPRLTGSFLPCSDT---PPPPFQTGRI 252
           +SSS+ A     A     +PP L    +PC+ T    PPP Q GR+
Sbjct: 425 SSSSQPAPPAAAAAASLSLPPPLLRPAIPCAPTLHRQPPPLQPGRL 470

>CHST8_HUMAN (Q9H2A9) Carbohydrate sulfotransferase 8 (EC 2.8.2.-)|
           (N-acetylgalactosamine-4-O-sulfotransferase 1)
           (GalNAc-4-O-sulfotransferase 1) (GalNAc-4-ST1)
           (GalNAc4ST-1)
          Length = 424

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = +1

Query: 154 QVARD*SRMPPRLTGSFLPCSDTPPPPFQTG-----RIKRR*LISSASPPA 291
           +V RD S   PR  G  LP  D P PP Q G     R +RR L+    P A
Sbjct: 74  RVTRDLSSGAPR--GRNLPAPDQPQPPLQRGTRLRLRQRRRRLLIKKMPAA 122

>PAG1_MOUSE (Q3U1F9) Phosphoprotein associated with glycosphingolipid-enriched|
           microdomains 1 (Csk-binding protein) (Transmembrane
           phosphoprotein Cbp)
          Length = 429

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 238 ETAAAACLSRGGKIQSTSAASEINPAPPEIQPRFLSWSCRDR 113
           E    A   +GGK +STSA  E+  AP E +  F  ++  DR
Sbjct: 188 EIKEVADKGQGGKSKSTSALKELQGAPMEGKADFAEYASVDR 229


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,542,451
Number of Sequences: 219361
Number of extensions: 910157
Number of successful extensions: 2410
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2409
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)