Clone Information

BLAST Search Result

Clone Name	bastl47c06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_513337.1\| PREDICTED: Pan troglodytes similar to hypotheti...	42	1.5
2	gb\|BC068402.1\| Danio rerio fragile X mental retardation, autosom...	42	1.5
3	ref\|NM_024595.1\| Homo sapiens chromosome 1 open reading frame 10...	42	1.5
4	emb\|AL606465.21\| Human DNA sequence from clone RP11-781D11 on ch...	42	1.5
5	ref\|XM_967948.1\| PREDICTED: Tribolium castaneum hypothetical pro...	42	1.5
6	emb\|BX572603.1\| Rhodopseudomonas palustris CGA009 complete genom...	42	1.5
7	gb\|AC022457.8\| Oryza sativa chromosome 10 BAC OSJNBa0006L06 geno...	42	1.5
8	dbj\|AK126262.1\| Homo sapiens cDNA FLJ44274 fis, clone TOVAR2001730	42	1.5
9	dbj\|AK124799.1\| Homo sapiens cDNA FLJ42809 fis, clone BRCAN2007144	42	1.5
10	dbj\|AK022728.1\| Homo sapiens cDNA FLJ12666 fis, clone NT2RM4002256	42	1.5
11	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.5
12	dbj\|AK223276.1\| Homo sapiens mRNA for hypothetical protein FLJ12...	42	1.5
13	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	42	1.5
14	gb\|BC001498.2\| Homo sapiens chromosome 1 open reading frame 108,...	42	1.5
15	ref\|XM_465137.1\| Oryza sativa (japonica cultivar-group), mRNA	40	6.1
16	ref\|XM_476871.1\| Oryza sativa (japonica cultivar-group), mRNA	40	6.1
17	ref\|XM_613058.2\| PREDICTED: Bos taurus similar to Golgi autoanti...	40	6.1
18	gb\|BC114480.1\| Homo sapiens tumor necrosis factor, alpha-induced...	40	6.1
19	gb\|BC113871.1\| Homo sapiens tumor necrosis factor, alpha-induced...	40	6.1
20	emb\|AL357060.31\| Human DNA sequence from clone RP11-356I2 on chr...	40	6.1
21	gb\|BC064689.1\| Homo sapiens tumor necrosis factor, alpha-induced...	40	6.1
22	gb\|BC041790.1\| Homo sapiens tumor necrosis factor, alpha-induced...	40	6.1
23	gb\|BC098379.1\| Homo sapiens cDNA clone MGC:104522 IMAGE:30528328...	40	6.1
24	gb\|AC093958.2\| Drosophila melanogaster 3L BAC RP98-48M7 (Roswell...	40	6.1
25	ref\|NM_006290.2\| Homo sapiens tumor necrosis factor, alpha-induc...	40	6.1
26	ref\|NM_168065.1\| Drosophila melanogaster CG32260-RA (CG32260), mRNA	40	6.1
27	gb\|U15967.1\|DMU15967 Drosophila melanogaster rfc40, Rop, and sma...	40	6.1
28	dbj\|AB168334.1\| Macaca fascicularis testis cDNA clone: QtsA-1129...	40	6.1
29	gb\|CP000040.1\| Bacillus cereus E33L plasmid pE33L466, complete s...	40	6.1
30	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.1
31	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.1
32	gb\|AY248754.1\| Homo sapiens tumor necrosis factor, alpha-induced...	40	6.1
33	dbj\|AP005248.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.1
34	dbj\|AP004298.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.1
35	dbj\|AP003800.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.1
36	dbj\|AP005310.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.1
37	dbj\|AK072431.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	6.1
38	gb\|AE003480.4\| Drosophila melanogaster chromosome 3L, section 14...	40	6.1
39	gb\|BT001437.1\| Drosophila melanogaster GH24648 full insert cDNA	40	6.1
40	gb\|M59465.1\|HUMA20 Human tumor necrosis factor alpha inducible p...	40	6.1
41	emb\|AL157444.1\|HSM802423 Homo sapiens mRNA; cDNA DKFZp434B029 (f...	40	6.1

>ref|XM_513337.1| PREDICTED: Pan troglodytes similar to hypothetical protein FLJ12666
           (LOC456775), mRNA
          Length = 890

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 222 gccgccgccgccgtttcagac 242
           |||||||||||||||||||||
Sbjct: 230 gccgccgccgccgtttcagac 250

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>gb|BC068402.1| Danio rerio fragile X mental retardation, autosomal homolog 1, mRNA
            (cDNA clone IMAGE:6962611), partial cds
          Length = 2813

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 222  gccgccgccgccgtttcagac 242
            |||||||||||||||||||||
Sbjct: 1702 gccgccgccgccgtttcagac 1722

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>ref|NM_024595.1| Homo sapiens chromosome 1 open reading frame 108 (C1orf108), mRNA
          Length = 1968

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 222 gccgccgccgccgtttcagac 242
           |||||||||||||||||||||
Sbjct: 268 gccgccgccgccgtttcagac 288

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>emb|AL606465.21| Human DNA sequence from clone RP11-781D11 on chromosome 1 Contains a
             translation initiation factor SUI1 (SUI1) pseudogene, the
             gene for a novel protein (FLJ12666, FLJ44274), the NDUFS5
             gene for 15kDA NADH dehydrogenase (ubiquinone) Fe-S
             protein 5 (NADH-coenzyme Q reductase) and a CpG island,
             complete sequence
          Length = 116103

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 222   gccgccgccgccgtttcagac 242
             |||||||||||||||||||||
Sbjct: 36000 gccgccgccgccgtttcagac 36020

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>ref|XM_967948.1| PREDICTED: Tribolium castaneum hypothetical protein LOC661809
           (LOC661809), mRNA
          Length = 4788

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 74  gcttttttcctcgacgggctagctcttct 102
           ||||||||||||||| |||| ||||||||
Sbjct: 249 gcttttttcctcgaccggcttgctcttct 221

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>emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genome; segment 11/16
          Length = 349635

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 218    acacgccgccgccgccgtttc 238
              |||||||||||||||||||||
Sbjct: 131332 acacgccgccgccgccgtttc 131312

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>gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 genomic sequence,
            complete sequence
          Length = 162339

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 219  cacgccgccgccgccgtttca 239
            |||||||||||||||||||||
Sbjct: 4321 cacgccgccgccgccgtttca 4301

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>dbj|AK126262.1| Homo sapiens cDNA FLJ44274 fis, clone TOVAR2001730
          Length = 1924

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 222 gccgccgccgccgtttcagac 242
           |||||||||||||||||||||
Sbjct: 225 gccgccgccgccgtttcagac 245

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>dbj|AK124799.1| Homo sapiens cDNA FLJ42809 fis, clone BRCAN2007144
          Length = 1888

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 222 gccgccgccgccgtttcagac 242
           |||||||||||||||||||||
Sbjct: 189 gccgccgccgccgtttcagac 209

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>dbj|AK022728.1| Homo sapiens cDNA FLJ12666 fis, clone NT2RM4002256
          Length = 1968

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 222 gccgccgccgccgtttcagac 242
           |||||||||||||||||||||
Sbjct: 268 gccgccgccgccgtttcagac 288

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 219      cacgccgccgccgccgtttca 239
                |||||||||||||||||||||
Sbjct: 16659804 cacgccgccgccgccgtttca 16659784

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>dbj|AK223276.1| Homo sapiens mRNA for hypothetical protein FLJ12666 variant, clone:
           STM07463
          Length = 2514

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 222 gccgccgccgccgtttcagac 242
           |||||||||||||||||||||
Sbjct: 225 gccgccgccgccgtttcagac 245

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 219      cacgccgccgccgccgtttca 239
                |||||||||||||||||||||
Sbjct: 16668844 cacgccgccgccgccgtttca 16668824

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>gb|BC001498.2| Homo sapiens chromosome 1 open reading frame 108, mRNA (cDNA clone
           IMAGE:3049652)
          Length = 1942

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 222 gccgccgccgccgtttcagac 242
           |||||||||||||||||||||
Sbjct: 224 gccgccgccgccgtttcagac 244

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>ref|XM_465137.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 252

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 219 cacgccgccgccgccgtttc 238
           ||||||||||||||||||||
Sbjct: 216 cacgccgccgccgccgtttc 197

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>ref|XM_476871.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1818

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 203  tcctcccctgctcagacacgccgccgccgccg 234
            |||||| |||||| |||| |||||||||||||
Sbjct: 1163 tcctccgctgctccgacaagccgccgccgccg 1194

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>ref|XM_613058.2| PREDICTED: Bos taurus similar to Golgi autoantigen, golgin
           subfamily a, 3 (LOC533600), mRNA
          Length = 4586

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 187 aggttgactggatctttcct 206
           ||||||||||||||||||||
Sbjct: 495 aggttgactggatctttcct 476

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>gb|BC114480.1| Homo sapiens tumor necrosis factor, alpha-induced protein 3, mRNA
            (cDNA clone MGC:138687 IMAGE:40036692), complete cds
          Length = 3825

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 198  atctttcctcccctgctcagacac 221
            |||||||||| |||||||||||||
Sbjct: 2528 atctttcctctcctgctcagacac 2505

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>gb|BC113871.1| Homo sapiens tumor necrosis factor, alpha-induced protein 3, mRNA
            (cDNA clone MGC:138688 IMAGE:40036694), complete cds
          Length = 3825

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 198  atctttcctcccctgctcagacac 221
            |||||||||| |||||||||||||
Sbjct: 2528 atctttcctctcctgctcagacac 2505

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>emb|AL357060.31| Human DNA sequence from clone RP11-356I2 on chromosome 6 Contains three
              novel genes, the TNFAIP3 gene for tumour necrosis factor
              alpha-induced protein 3 and a CpG island, complete sequence
          Length = 182209

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 198    atctttcctcccctgctcagacac 221
              |||||||||| |||||||||||||
Sbjct: 166583 atctttcctctcctgctcagacac 166560

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>gb|BC064689.1| Homo sapiens tumor necrosis factor, alpha-induced protein 3, mRNA
            (cDNA clone IMAGE:30345989), complete cds
          Length = 5457

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 198  atctttcctcccctgctcagacac 221
            |||||||||| |||||||||||||
Sbjct: 3573 atctttcctctcctgctcagacac 3550

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>gb|BC041790.1| Homo sapiens tumor necrosis factor, alpha-induced protein 3, mRNA
            (cDNA clone IMAGE:5271522), containing frame-shift errors
          Length = 4549

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 198  atctttcctcccctgctcagacac 221
            |||||||||| |||||||||||||
Sbjct: 2671 atctttcctctcctgctcagacac 2648

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>gb|BC098379.1| Homo sapiens cDNA clone MGC:104522 IMAGE:30528328, complete cds
          Length = 5457

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 198  atctttcctcccctgctcagacac 221
            |||||||||| |||||||||||||
Sbjct: 3573 atctttcctctcctgctcagacac 3550

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>gb|AC093958.2| Drosophila melanogaster 3L BAC RP98-48M7 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 174373

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   cgccgccgccgccgtttcag 240
             ||||||||||||||||||||
Sbjct: 49667 cgccgccgccgccgtttcag 49686

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>ref|NM_006290.2| Homo sapiens tumor necrosis factor, alpha-induced protein 3
            (TNFAIP3), mRNA
          Length = 4446

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 198  atctttcctcccctgctcagacac 221
            |||||||||| |||||||||||||
Sbjct: 2571 atctttcctctcctgctcagacac 2548

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>ref|NM_168065.1| Drosophila melanogaster CG32260-RA (CG32260), mRNA
          Length = 1822

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 221 cgccgccgccgccgtttcag 240
           ||||||||||||||||||||
Sbjct: 252 cgccgccgccgccgtttcag 271

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>gb|U15967.1|DMU15967 Drosophila melanogaster rfc40, Rop, and small GTP binding protein (Rop)
             genes, complete cds
          Length = 10223

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   cgccgccgccgccgtttcag 240
             ||||||||||||||||||||
Sbjct: 10060 cgccgccgccgccgtttcag 10079

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>dbj|AB168334.1| Macaca fascicularis testis cDNA clone: QtsA-11293, similar to human
            tumor necrosis factor, alpha-induced protein 3(TNFAIP3),
            mRNA, RefSeq: NM_006290.2
          Length = 4166

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 198  atctttcctcccctgctcagacac 221
            |||||||||| |||||||||||||
Sbjct: 2785 atctttcctctcctgctcagacac 2762

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>gb|CP000040.1| Bacillus cereus E33L plasmid pE33L466, complete sequence
          Length = 466370

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 306    ccaatgccgccaagattgta 325
              ||||||||||||||||||||
Sbjct: 302155 ccaatgccgccaagattgta 302136

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 219      cacgccgccgccgccgtttc 238
                ||||||||||||||||||||
Sbjct: 13672473 cacgccgccgccgccgtttc 13672454



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 203     tcctcccctgctcagacacgccgccgccgccg 234
               |||||| |||||| |||| |||||||||||||
Sbjct: 4339010 tcctccgctgctccgacaagccgccgccgccg 4339041

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 219      cacgccgccgccgccgtttc 238
                ||||||||||||||||||||
Sbjct: 11794582 cacgccgccgccgccgtttc 11794601



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 219      cacgccgccgccgccgtttc 238
                ||||||||||||||||||||
Sbjct: 11786110 cacgccgccgccgccgtttc 11786129

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>gb|AY248754.1| Homo sapiens tumor necrosis factor, alpha-induced protein 3 (TNFAIP3)
             gene, complete cds
          Length = 19810

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 198   atctttcctcccctgctcagacac 221
             |||||||||| |||||||||||||
Sbjct: 15956 atctttcctctcctgctcagacac 15933

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>dbj|AP005248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0084P08
          Length = 158656

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 219    cacgccgccgccgccgtttc 238
              ||||||||||||||||||||
Sbjct: 140092 cacgccgccgccgccgtttc 140073

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>dbj|AP004298.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0409D09
          Length = 150485

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   cacgccgccgccgccgtttc 238
             ||||||||||||||||||||
Sbjct: 23465 cacgccgccgccgccgtttc 23446

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>dbj|AP003800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1014_E09
          Length = 184624

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 203    tcctcccctgctcagacacgccgccgccgccg 234
              |||||| |||||| |||| |||||||||||||
Sbjct: 160064 tcctccgctgctccgacaagccgccgccgccg 160095

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>dbj|AP005310.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0477B05
          Length = 142166

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 219    cacgccgccgccgccgtttc 238
              ||||||||||||||||||||
Sbjct: 102472 cacgccgccgccgccgtttc 102491



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   cacgccgccgccgccgtttc 238
             ||||||||||||||||||||
Sbjct: 94000 cacgccgccgccgccgtttc 94019

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>dbj|AK072431.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093E18, full
            insert sequence
          Length = 1818

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 203  tcctcccctgctcagacacgccgccgccgccg 234
            |||||| |||||| |||| |||||||||||||
Sbjct: 1163 tcctccgctgctccgacaagccgccgccgccg 1194

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>gb|AE003480.4| Drosophila melanogaster chromosome 3L, section 14 of 83 of the complete
              sequence
          Length = 311933

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    cgccgccgccgccgtttcag 240
              ||||||||||||||||||||
Sbjct: 147465 cgccgccgccgccgtttcag 147484

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>gb|BT001437.1| Drosophila melanogaster GH24648 full insert cDNA
          Length = 1066

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 221 cgccgccgccgccgtttcag 240
           ||||||||||||||||||||
Sbjct: 596 cgccgccgccgccgtttcag 615

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>gb|M59465.1|HUMA20 Human tumor necrosis factor alpha inducible protein A20 mRNA,
            complete cds
          Length = 4426

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 198  atctttcctcccctgctcagacac 221
            |||||||||| |||||||||||||
Sbjct: 2571 atctttcctctcctgctcagacac 2548

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>emb|AL157444.1|HSM802423 Homo sapiens mRNA; cDNA DKFZp434B029 (from clone DKFZp434B029);
            partial cds
          Length = 3473

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 198  atctttcctcccctgctcagacac 221
            |||||||||| |||||||||||||
Sbjct: 2043 atctttcctctcctgctcagacac 2020


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,449,005
Number of Sequences: 3902068
Number of extensions: 2449005
Number of successful extensions: 177965
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 175826
Number of HSP's gapped (non-prelim): 2139
length of query: 450
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 428
effective length of database: 17,147,199,772
effective search space: 7339001502416
effective search space used: 7339001502416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result