ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl47c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PUR6_CRYNV (P0C017) Phosphoribosylaminoimidazole carboxylase (EC... 28 8.9
2DMXL1_HUMAN (Q9Y485) Protein DmX-like 1 (X-like 1 protein) 28 8.9

>PUR6_CRYNV (P0C017) Phosphoribosylaminoimidazole carboxylase (EC 4.1.1.21)|
           (AIR carboxylase) (AIRC)
          Length = 582

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 127 RHLSCPALVL-LPSLFLQQGHLRLVPSAGPTEQVLLPPDSHS 249
           R L+ PA +L +P L L  G      S  P +Q LLPP SHS
Sbjct: 17  RMLTHPAALLGIPLLILDSG------SFTPAKQTLLPPPSHS 52



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>DMXL1_HUMAN (Q9Y485) Protein DmX-like 1 (X-like 1 protein)|
          Length = 3027

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 451 ALAIASHTGPAPFAQGGHHFHR 386
           +LA+ +HTG  P  Q  HH HR
Sbjct: 324 SLALVAHTGYLPHQQDPHHVHR 345


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,382,947
Number of Sequences: 219361
Number of extensions: 1016187
Number of successful extensions: 2396
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2396
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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