>CO4A1_HUMAN (P02462) Collagen alpha-1(IV) chain precursor|
          Length = 1669

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 219 GLELPGPRADE-AQVLPQAPGEEGERPLPRRGGA 121
           GL++PGP+ D+ AQ LP   G+ G   LP + GA
Sbjct: 835 GLDMPGPKGDKGAQGLPGITGQSGLPGLPGQQGA 868



 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 207 PGPRADEAQV-LPQAPGEEGERPLPRRGG 124
           PGP+    ++  P  PG +G+R LP R G
Sbjct: 479 PGPQGPPGEIGFPGQPGAKGDRGLPGRDG 507

>TSPY1_BOVIN (O19110) Testis-specific Y-encoded protein 1 (bTSPY)|
          Length = 317

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 240 RDRRAEEGLELPGPRADEAQVLPQAPGEE 154
           R+RR+EEG  +PGPR  +       PG+E
Sbjct: 20  RERRSEEGGSVPGPRTFQVVSPVVTPGQE 48

>VGLB_HSV2S (P24994) Glycoprotein B precursor|
          Length = 885

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +1

Query: 109 GVDTRPAAAGEGALSFLSRSLREDLRLIRARAGELETFLSAPVP 240
           GV T PA A   ++     +LREDLR I+AR G+  TF   P P
Sbjct: 59  GVAT-PAPAANASVEAGRATLREDLREIKARDGD-ATFYVCPPP 100

>IF2_CAUCR (Q9AC25) Translation initiation factor IF-2|
          Length = 1009

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -1

Query: 237 DRRAEEGLELPGPRADEAQVLPQAPGEEGERPLPRRGGARVD 112
           D  A  G   P P  D     P+ P  +G+RP   RGG R D
Sbjct: 241 DANANFGQRAPRPEGDR----PRGPRPDGDRPQGDRGGYRGD 278

>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -1

Query: 243  LRDRRAEEGLELPGPRADEAQVLPQAPGEEGERPLPRRGGAR 118
            L+ ++ E G   PG R   A  +P APGE GE+  P   G R
Sbjct: 2738 LQGQKGERGP--PGERVVGAPGVPGAPGERGEQGRPGPAGPR 2777

>RECF_TROWT (Q83N51) DNA replication and repair protein recF|
          Length = 363

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 243 LRDRRAEEGLELPGPRADEAQVL 175
           LRDR  EEG+ L GP  D   +L
Sbjct: 240 LRDREIEEGVTLAGPHRDNVDIL 262

>RECF_TROW8 (Q83NZ4) DNA replication and repair protein recF|
          Length = 363

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 243 LRDRRAEEGLELPGPRADEAQVL 175
           LRDR  EEG+ L GP  D   +L
Sbjct: 240 LRDREIEEGVTLAGPHRDNVDIL 262

>XYN1_ASPTU (P55331) Endo-1,4-beta-xylanase I precursor (EC 3.2.1.8) (Xylanase|
           I) (1,4-beta-D-xylan xylanohydrolase I)
          Length = 211

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 181 LRLIRARAGELETFLSAPVPEPDLFAR 261
           +++  A AG L T  +AP PEPDL +R
Sbjct: 1   MKVTAAFAGLLVTAFAAPAPEPDLVSR 27

>OLIG1_RAT (Q9WUQ3) Oligodendrocyte transcription factor 1 (Oligo1) (Olg-1|
           bHLH protein)
          Length = 261

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 210 LPGPRADEAQVLPQAPGEEGERPLPRRGGARVDAE 106
           LP P  ++    P+AP  E   P P  GGAR DA+
Sbjct: 58  LPKPAREK----PEAPLAEPRGPAPESGGARADAK 88

>CO4A1_MOUSE (P02463) Collagen alpha-1(IV) chain precursor|
          Length = 1669

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 219 GLELPGPRADE-AQVLPQAPGEEGERPLPRRGG 124
           GL++PGP+ D+ +Q LP   G+ G   LP + G
Sbjct: 835 GLDMPGPKGDKGSQGLPGLTGQSGLPGLPGQQG 867



 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 207 PGPRADEAQV-LPQAPGEEGERPLPRRGG 124
           PGP+    ++  P  PG +G+R LP R G
Sbjct: 479 PGPQGPPGEIGFPGQPGAKGDRGLPGRDG 507

>SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily C member 2 (SWI/SNF
           complex 170 kDa subunit) (BRG1-associated factor 170)
          Length = 1214

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 192 DEAQVLPQAPGEEGERPLPRRGGARVDAEA 103
           DEA+V  QA  E+ E   PR GG  ++ EA
Sbjct: 757 DEARVEGQATDEKKEPKEPREGGGAIEEEA 786

>UCR11_SOLTU (P48505) Ubiquinol-cytochrome c reductase complex 6.7 kDa protein|
           (EC 1.10.2.2) (CR6)
          Length = 61

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +1

Query: 118 TRPAAAGEGALSFLSRSLREDLRLIRARAG 207
           T PAAAG G   FL   LR     I+A AG
Sbjct: 1   TSPAAAGNGLFKFLRPKLRPQSTDIQAAAG 30

>UVRC_GLOVI (Q7NFD4) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 628

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +1

Query: 127 AAAGEGALSFLSRSLREDLRLIRARAGELETFLSAPVPEPDLFA 258
           AA+GE     L R L E  R   +    LE     P+PE D+ A
Sbjct: 292 AASGEDPGHILQRVLEEHYRASASEEIPLEVLTQHPLPEADILA 335

>CO9A1_HUMAN (P20849) Collagen alpha-1(IX) chain precursor|
          Length = 921

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 207 PGPRADEAQVLPQAPGEEGERPLPRRGGARVDAEA 103
           PGP     Q LP APG++G+R  P   G + D  A
Sbjct: 492 PGP-----QGLPGAPGDQGQRGPPGEAGPKGDRGA 521

>CUTL2_MOUSE (P70298) Homeobox protein cut-like 2 (Homeobox protein Cux-2)|
           (Cut-like 2)
          Length = 1426

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 201 PRADEAQVLPQAPGEEGERPLPRRGGARVDAEA 103
           PR DEA + P+     GE   PR G  + +A A
Sbjct: 766 PRGDEATIAPEDEAAMGEDEAPRVGELKAEAGA 798

>SCG1_PIG (Q9GLG4) Secretogranin-1 precursor (Secretogranin I) (SgI)|
           (Chromogranin B) (CgB) [Contains: Peptide SR-17; Peptide
           HQ-34; Peptide KR-11]
          Length = 668

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -1

Query: 201 PRADEAQVLPQAPGEEGERPLPRRGGARVDAEASHMALLRPG 76
           PR    +  P    +EG  P   RG  R ++E S + L  PG
Sbjct: 276 PRHHHGRSRPDRAPQEGSPPPEERGHPREESEESVLGLASPG 317

>OLIG1_MOUSE (Q9JKN5) Oligodendrocyte transcription factor 1 (Oligo1)|
           (Oligodendrocyte-specific bHLH transcription factor 1)
          Length = 260

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 210 LPGPRADEAQVLPQAPGEEGERPLPRRGGARVDAE 106
           LP P  ++A+    AP  E   P P  GGAR DA+
Sbjct: 57  LPKPAREKAE----APLAEPRGPAPESGGARADAK 87


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,040,358
Number of Sequences: 219361
Number of extensions: 382991
Number of successful extensions: 1825
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1823
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)