ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl47c02 |
|---|---|
| Clone Library Name | barley_pub |
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 122 bits (306), Expect(2) = 2e-33 Identities = 59/93 (63%), Positives = 72/93 (77%) Frame = +2 Query: 74 MSGGFFRGTSADQDTRFSNKHAKLLKTQKFASELDHQVDMSKVKMDVMKPWIATRVTELL 253 M GFFRGTSA+QD RFSNK KLLK KFA L+ +VDMSKV ++V+KPWI RVTE+L Sbjct: 1 MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEIL 60 Query: 254 GFEDEVLINFIYGLLDVKEVDGKYIQIQLTGFM 352 GFED+V+I FI+ L+VK D K +QI LTGF+ Sbjct: 61 GFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFL 93 Score = 38.9 bits (89), Expect(2) = 2e-33 Identities = 16/30 (53%), Positives = 24/30 (80%) Frame = +1 Query: 346 VHGEDTIKFMRELWSLLLSAQQNASGVPXA 435 ++G++ +FM ELW LLLSAQ+N +G+P A Sbjct: 93 LNGKNAREFMGELWPLLLSAQENIAGIPSA 122
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 122 bits (306), Expect(2) = 2e-33 Identities = 59/93 (63%), Positives = 72/93 (77%) Frame = +2 Query: 74 MSGGFFRGTSADQDTRFSNKHAKLLKTQKFASELDHQVDMSKVKMDVMKPWIATRVTELL 253 M GFFRGTSA+QD RFSNK KLLK KFA L+ +VDMSKV ++V+KPWI RVTE+L Sbjct: 1 MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEIL 60 Query: 254 GFEDEVLINFIYGLLDVKEVDGKYIQIQLTGFM 352 GFED+V+I FI+ L+VK D K +QI LTGF+ Sbjct: 61 GFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFL 93 Score = 38.9 bits (89), Expect(2) = 2e-33 Identities = 16/30 (53%), Positives = 24/30 (80%) Frame = +1 Query: 346 VHGEDTIKFMRELWSLLLSAQQNASGVPXA 435 ++G++ +FM ELW LLLSAQ+N +G+P A Sbjct: 93 LNGKNAREFMGELWPLLLSAQENIAGIPSA 122
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 122 bits (306), Expect(2) = 2e-33 Identities = 59/93 (63%), Positives = 72/93 (77%) Frame = +2 Query: 74 MSGGFFRGTSADQDTRFSNKHAKLLKTQKFASELDHQVDMSKVKMDVMKPWIATRVTELL 253 M GFFRGTSA+QD RFSNK KLLK KFA L+ +VDMSKV ++V+KPWI RVTE+L Sbjct: 1 MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEIL 60 Query: 254 GFEDEVLINFIYGLLDVKEVDGKYIQIQLTGFM 352 GFED+V+I FI+ L+VK D K +QI LTGF+ Sbjct: 61 GFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFL 93 Score = 38.9 bits (89), Expect(2) = 2e-33 Identities = 16/30 (53%), Positives = 24/30 (80%) Frame = +1 Query: 346 VHGEDTIKFMRELWSLLLSAQQNASGVPXA 435 ++G++ +FM ELW LLLSAQ+N +G+P A Sbjct: 93 LNGKNAREFMGELWPLLLSAQENIAGIPSA 122
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 122 bits (306), Expect(2) = 2e-33 Identities = 59/93 (63%), Positives = 72/93 (77%) Frame = +2 Query: 74 MSGGFFRGTSADQDTRFSNKHAKLLKTQKFASELDHQVDMSKVKMDVMKPWIATRVTELL 253 M GFFRGTSA+QD RFSNK KLLK KFA L+ +VDMSKV ++V+KPWI RVTE+L Sbjct: 1 MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEIL 60 Query: 254 GFEDEVLINFIYGLLDVKEVDGKYIQIQLTGFM 352 GFED+V+I FI+ L+VK D K +QI LTGF+ Sbjct: 61 GFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFL 93 Score = 38.9 bits (89), Expect(2) = 2e-33 Identities = 16/30 (53%), Positives = 24/30 (80%) Frame = +1 Query: 346 VHGEDTIKFMRELWSLLLSAQQNASGVPXA 435 ++G++ +FM ELW LLLSAQ+N +G+P A Sbjct: 93 LNGKNAREFMGELWPLLLSAQENIAGIPTA 122
>RPOB_DESPS (Q6AP78) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1360 Score = 31.6 bits (70), Expect = 0.87 Identities = 16/46 (34%), Positives = 26/46 (56%) Frame = +2 Query: 188 DMSKVKMDVMKPWIATRVTELLGFEDEVLINFIYGLLDVKEVDGKY 325 D+ V++D + + T + + LG+ E L+ Y L +VK DGKY Sbjct: 191 DVLHVRIDRRRKFPVTTLLKALGYSSEELLREFYPLENVKLSDGKY 236
>DNAJ_GLUOX (Q5FSL4) Chaperone protein dnaJ| Length = 380 Score = 30.8 bits (68), Expect = 1.5 Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 2/76 (2%) Frame = +1 Query: 142 VAEDTEVRV*A*PSGGHVKGE-DGRDEAVDCHTGH*ASWVRGRSAYQLHLRPA-RCEGGG 315 V +D EVR H G D + + C T H A VR + + L RP C G G Sbjct: 137 VTKDVEVRTRVTCEACHGSGSADPKAGSSTCPTCHGAGKVRAQQGFFLVERPCPTCHGSG 196 Query: 316 REVHTDPADGVHGEDT 363 R V +P HG T Sbjct: 197 RTV-ANPCKVCHGTGT 211
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 30.0 bits (66), Expect = 2.5 Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 3/98 (3%) Frame = -3 Query: 347 TPSAGSVCTSRPPPSHRAGRR*S**ALRPRTQEAQ*PVWQSTA---SSRPSSPLTCPPDG 177 TPS T+ PPP+ P T P+ +T ++ PSSP+T P Sbjct: 1640 TPSPPPTTTTTPPPTTTPSP--------PTTTTPSPPITTTTTPPPTTTPSSPITTTPSP 1691 Query: 176 QAQTRTSVSSATWHACWRIWYPGRPTSPGRSLLTSSQT 63 T T+ S T P+SP + T S T Sbjct: 1692 PTTTMTTPSPTT-----------TPSSPITTTTTPSST 1718
>PRPF3_MOUSE (Q922U1) U4/U6 small nuclear ribonucleoprotein Prp3| (Pre-mRNA-splicing factor 3) Length = 683 Score = 30.0 bits (66), Expect = 2.5 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +2 Query: 191 MSKVKMDVMKPWIATRVTELLGFEDEVLI 277 +SK ++D +KPWI V +LGF + ++ Sbjct: 3 LSKRELDELKPWIEKTVKRVLGFSEPTVV 31
>PRPF3_HUMAN (O43395) U4/U6 small nuclear ribonucleoprotein Prp3| (Pre-mRNA-splicing factor 3) (U4/U6 snRNP 90 kDa protein) (hPrp3) Length = 683 Score = 30.0 bits (66), Expect = 2.5 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +2 Query: 191 MSKVKMDVMKPWIATRVTELLGFEDEVLI 277 +SK ++D +KPWI V +LGF + ++ Sbjct: 3 LSKRELDELKPWIEKTVKRVLGFSEPTVV 31
>MFS14_MAIZE (Q01900) MFS14 protein precursor| Length = 126 Score = 29.6 bits (65), Expect = 3.3 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = -3 Query: 260 RTQEAQ*PVWQSTASSRPSSPLTCPPDGQAQTRTS-VSSATWHACWRIWYPGR 105 RT A V S ++ +S CP + T+ + + TWHAC W GR Sbjct: 65 RTAAALSAVCTSAPAAPWASSTACPAGATSPKPTAPLEAGTWHACCNGWQEGR 117
>DNAJ2_CORGL (Q8NLY8) Chaperone protein dnaJ 2| Length = 395 Score = 28.9 bits (63), Expect = 5.7 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +1 Query: 292 PARCEGGGREVHTDPADGVHGEDTIKFMREL 384 P GG E+ TDP D HG T++ R + Sbjct: 215 PCATCGGTGEIITDPCDNCHGRGTVRKSRSI 245
>CSF3R_HUMAN (Q99062) Granulocyte colony-stimulating factor receptor precursor| (G-CSF-R) (CD114 antigen) Length = 836 Score = 28.9 bits (63), Expect = 5.7 Identities = 17/60 (28%), Positives = 23/60 (38%) Frame = -3 Query: 269 LRPRTQEAQ*PVWQSTASSRPSSPLTCPPDGQAQTRTSVSSATWHACWRIWYPGRPTSPG 90 L QE + S +SRP+ + G A TR + H+ W W P P G Sbjct: 399 LPSEAQEVALVAYNSAGTSRPTPVVFSESRGPALTRLHAMARDPHSLWVGWEPPNPWPQG 458
>CABIN_RAT (O88480) Calcineurin-binding protein Cabin 1 (Calcineurin inhibitor)| (CAIN) Length = 2182 Score = 28.5 bits (62), Expect = 7.4 Identities = 18/60 (30%), Positives = 27/60 (45%) Frame = -1 Query: 424 HHWHSAAHLEGGSTAPS*TLLYLLHEPRQLDLYVLPVHLLHIEQAVDEVDKHFVLEPKKL 245 H + SAAH EG + Y+L + + V+LLH QA + + PKK+ Sbjct: 1189 HCFTSAAHCEGDGDEEEWLIHYMLGKVAEKQQQPPTVYLLHYRQAGHYLHEEAARYPKKI 1248
>I13R1_MOUSE (O09030) Interleukin-13 receptor alpha-1 chain precursor| (IL-13R-alpha-1) (IL-13RA-1) (Interleukin-13-binding protein) (NR4) (CD213a1 antigen) Length = 424 Score = 28.5 bits (62), Expect = 7.4 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 7/52 (13%) Frame = -3 Query: 227 STASSRPSSPLT----CPPDGQAQTRTSVSSATWHACWRI---WYPGRPTSP 93 S S SPL PP+G ++ + WH + W PGR TSP Sbjct: 101 SANESEKPSPLVKKCISPPEGDPESAVTELKCIWHNLSYMKCSWLPGRNTSP 152
>MAST3_HUMAN (O60307) Microtubule-associated serine/threonine-protein kinase 3 (EC| 2.7.11.1) Length = 1309 Score = 28.5 bits (62), Expect = 7.4 Identities = 27/92 (29%), Positives = 36/92 (39%) Frame = -3 Query: 359 SSP*TPSAGSVCTSRPPPSHRAGRR*S**ALRPRTQEAQ*PVWQSTASSRPSSPLTCPPD 180 SSP +P+A +RP H + RP+T + + SS P SPL CPP Sbjct: 1145 SSPASPAAAG--HTRPSSLHGLAAKLG--PPRPKTGR------RKSTSSIPPSPLACPPI 1194 Query: 179 GQAQTRTSVSSATWHACWRIWYPGRPTSPGRS 84 R+ PG P +P RS Sbjct: 1195 SAPPPRSPSP-----------LPGHPPAPARS 1215
>VP132_SCHPO (O42926) Putative vacuolar protein sorting-associated protein vps1302| Length = 3131 Score = 28.1 bits (61), Expect = 9.7 Identities = 18/74 (24%), Positives = 35/74 (47%) Frame = +2 Query: 95 GTSADQDTRFSNKHAKLLKTQKFASELDHQVDMSKVKMDVMKPWIATRVTELLGFEDEVL 274 G A+ F +KLL+ + + H +D+S V ++PW T + + + EV Sbjct: 2350 GEEANYSWDFPILKSKLLQVE--VGKAIHDLDISSVGQ--LEPWHPTELDQKIRIHPEVK 2405 Query: 275 INFIYGLLDVKEVD 316 ++ + L+ E+D Sbjct: 2406 VDSLTSLVTFNEID 2419
>TTC9_HUMAN (Q92623) Tetratricopeptide repeat protein 9 (TPR repeat protein 9)| (Fragment) Length = 336 Score = 28.1 bits (61), Expect = 9.7 Identities = 17/39 (43%), Positives = 18/39 (46%) Frame = +1 Query: 199 GEDGRDEAVDCHTGH*ASWVRGRSAYQLHLRPARCEGGG 315 G GR A CH H A RGR L+ P R GGG Sbjct: 62 GSAGRQTAAGCHGRHEACEARGRRPRLLN--PGRRGGGG 98
>DNAJ_ACEAC (Q75WD2) Chaperone protein dnaJ| Length = 379 Score = 28.1 bits (61), Expect = 9.7 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Frame = +1 Query: 202 EDGRDEAVDCHTGH*ASWVRGRSAYQLHLRPA-RCEGGGREVHTDPADGVHGEDTIK 369 +DG C + H A VR + + RP C G G+ V +P HGE T++ Sbjct: 157 DDGASGVEVCPSCHGAGKVRAHEGFFVVERPCPTCHGAGKVVK-NPCKFCHGEGTVE 212
>PHOP1_MOUSE (Q8R2H9) Phosphoethanolamine/phosphocholine phosphatase (EC| 3.1.3.75) Length = 267 Score = 28.1 bits (61), Expect = 9.7 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3 Query: 404 ALRRRLHSSLMNFIVSSP*TPSAGSVCTSRPPPSHRAGR 288 ALR H SL I+S+P P A + T RP +H R Sbjct: 132 ALRAAGHHSLFRRILSNPSGPDARGLLTLRPFHTHSCSR 170 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,032,481 Number of Sequences: 219361 Number of extensions: 1302408 Number of successful extensions: 3934 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3795 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3933 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
