ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl47c02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK102826.1| Oryza sativa (japonica cultivar-group) cDNA clon... 303 3e-79
2dbj|AK066896.1| Oryza sativa (japonica cultivar-group) cDNA clon... 303 3e-79
3ref|NM_187499.1| Oryza sativa (japonica cultivar-group), predic... 297 2e-77
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 125 1e-25
5gb|AC135209.2| Oryza sativa (japonica cultivar-group) chromosome... 125 1e-25
6gb|AC135207.2| Oryza sativa (japonica cultivar-group) chromosome... 125 1e-25
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
8gb|AC157320.2| Zea mays clone ZMMBBb-7C14, complete sequence 90 7e-15
9ref|NM_128477.2| Arabidopsis thaliana unknown protein AT2G29210 ... 52 0.002
10gb|BT000633.1| Arabidopsis thaliana putative proline-rich protei... 52 0.002
11gb|AY125501.1| Arabidopsis thaliana At2g29210/F16P2.41 mRNA, com... 52 0.002
12gb|AC004561.3| Arabidopsis thaliana chromosome 2 clone F16P2 map... 52 0.002
13emb|AJ292982.1|ATH292982 Arabidopsis thaliana mRNA for SRM102 52 0.002
14ref|XM_705790.1| Candida albicans SC5314 putative transcription ... 44 0.38
15ref|XM_705781.1| Candida albicans SC5314 putative transcription ... 44 0.38
16gb|AE008860.1| Salmonella typhimurium LT2, section 164 of 220 of... 42 1.5
17emb|AL627281.1| Salmonella enterica serovar Typhi (Salmonella ty... 42 1.5
18gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 42 1.5
19gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 42 1.5
20gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 1.5
21gb|U76993.1|STU76993 Salmonella typhimurium adenine methylase (d... 42 1.5
22ref|NM_022020.1| Mus musculus retinol binding protein 7, cellula... 40 5.9
23gb|AY141971.1| Mus musculus cellular retinol binding protein typ... 40 5.9
24emb|AL357564.17| Human DNA sequence from clone RP1-43E13 on chro... 40 5.9
25gb|AC112001.6| Rattus norvegicus 2 BAC CH230-54E3 (Children's Ho... 40 5.9
26gb|AC118487.4| Rattus norvegicus 2 BAC CH230-285C2 (Children's H... 40 5.9
27gb|AF260927.1|AF260927 Mus musculus D4Cole1e (D4Cole1e) gene, pa... 40 5.9
28gb|AF260923.1|AF260923 Mus musculus retinoid binding protein 7 (... 40 5.9
29gb|BC028432.1| Mus musculus retinol binding protein 7, cellular,... 40 5.9
30dbj|AK114719.1| Ciona intestinalis cDNA, clone:cieg014j11, full ... 40 5.9
31gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 5.9
32gb|U17896.1|XMU17896 Xiphophorus maculatus ERCC2/XPD gene, compl... 40 5.9
33emb|AL606973.29| Mouse DNA sequence from clone RP23-173D8 on chr... 40 5.9 
>dbj|AK102826.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033109C10, full
           insert sequence
          Length = 3185

 Score =  303 bits (153), Expect = 3e-79
 Identities = 310/361 (85%), Gaps = 1/361 (0%)
 Strand = Plus / Plus

                                                                       
Query: 71  aagatgtcaggaggcttcttccgggggacgtcggccgaccaggataccagattctccaac 130
           |||||||| || |||||||||||||||||||||||||| ||||| ||| | |||||||||
Sbjct: 69  aagatgtcgggcggcttcttccgggggacgtcggccgatcaggacacccgtttctccaac 128

                                                                       
Query: 131 aagcatgccaagttgctgaagacacagaagttcgcgtctgagcttgaccatcaggtggac 190
           ||||| || ||| |||| ||||| |||||||||||| | |||||||| || | |||||||
Sbjct: 129 aagcaggcgaagctgctcaagacgcagaagttcgcgcccgagcttgaacacctggtggac 188

                                                                       
Query: 191 atgtcaaaggtgaagatggacgtgatgaagccgtggattgccacacgggtcactgagctt 250
           ||| | |||||||||||||| |||||||| || ||||| || || || ||||| ||||| 
Sbjct: 189 atgactaaggtgaagatggatgtgatgaaaccatggatcgcgacccgtgtcaccgagctc 248

                                                                       
Query: 251 cttgggttcgaggacgaagtgcttatcaacttcatctacggcctgctcgatgtgaaggag 310
           || |||||||||||||||||||| |||||||||||||||||||| ||||| | |||||||
Sbjct: 249 ctagggttcgaggacgaagtgctcatcaacttcatctacggcctcctcgaagagaaggag 308

                                                                       
Query: 311 gtggacgggaagtacatacagatccagctgacggggttcatggagaag-atacaataaag 369
           | ||| || ||| | |||||||| |||||||| || |||||||||||| | ||| | |||
Sbjct: 309 gcggatggaaagaagatacagatacagctgacaggattcatggagaagaacacagtgaag 368

                                                                       
Query: 370 ttcatgagggagctgtggagcctccttctaagtgcgcagcagaatgccagtggtgtgccc 429
           ||||||| |||||||||||||||||| || ||||| || |||||||| ||||| ||||||
Sbjct: 369 ttcatgaaggagctgtggagcctcctactcagtgcacaacagaatgctagtggggtgccc 428

            
Query: 430 c 430
           |
Sbjct: 429 c 429
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>dbj|AK066896.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091L22, full
           insert sequence
          Length = 2881

 Score =  303 bits (153), Expect = 3e-79
 Identities = 310/361 (85%), Gaps = 1/361 (0%)
 Strand = Plus / Plus

                                                                       
Query: 71  aagatgtcaggaggcttcttccgggggacgtcggccgaccaggataccagattctccaac 130
           |||||||| || |||||||||||||||||||||||||| ||||| ||| | |||||||||
Sbjct: 104 aagatgtcgggcggcttcttccgggggacgtcggccgatcaggacacccgtttctccaac 163

                                                                       
Query: 131 aagcatgccaagttgctgaagacacagaagttcgcgtctgagcttgaccatcaggtggac 190
           ||||| || ||| |||| ||||| |||||||||||| | |||||||| || | |||||||
Sbjct: 164 aagcaggcgaagctgctcaagacgcagaagttcgcgcccgagcttgaacacctggtggac 223

                                                                       
Query: 191 atgtcaaaggtgaagatggacgtgatgaagccgtggattgccacacgggtcactgagctt 250
           ||| | |||||||||||||| |||||||| || ||||| || || || ||||| ||||| 
Sbjct: 224 atgactaaggtgaagatggatgtgatgaaaccatggatcgcgacccgtgtcaccgagctc 283

                                                                       
Query: 251 cttgggttcgaggacgaagtgcttatcaacttcatctacggcctgctcgatgtgaaggag 310
           || |||||||||||||||||||| |||||||||||||||||||| ||||| | |||||||
Sbjct: 284 ctagggttcgaggacgaagtgctcatcaacttcatctacggcctcctcgaagagaaggag 343

                                                                       
Query: 311 gtggacgggaagtacatacagatccagctgacggggttcatggagaag-atacaataaag 369
           | ||| || ||| | |||||||| |||||||| || |||||||||||| | ||| | |||
Sbjct: 344 gcggatggaaagaagatacagatacagctgacaggattcatggagaagaacacagtgaag 403

                                                                       
Query: 370 ttcatgagggagctgtggagcctccttctaagtgcgcagcagaatgccagtggtgtgccc 429
           ||||||| |||||||||||||||||| || ||||| || |||||||| ||||| ||||||
Sbjct: 404 ttcatgaaggagctgtggagcctcctactcagtgcacaacagaatgctagtggggtgccc 463

            
Query: 430 c 430
           |
Sbjct: 464 c 464
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>ref|NM_187499.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 600

 Score =  297 bits (150), Expect = 2e-77
 Identities = 307/358 (85%), Gaps = 1/358 (0%)
 Strand = Plus / Plus

                                                                       
Query: 74  atgtcaggaggcttcttccgggggacgtcggccgaccaggataccagattctccaacaag 133
           ||||| || |||||||||||||||||||||||||| ||||| ||| | ||||||||||||
Sbjct: 1   atgtcgggcggcttcttccgggggacgtcggccgatcaggacacccgtttctccaacaag 60

                                                                       
Query: 134 catgccaagttgctgaagacacagaagttcgcgtctgagcttgaccatcaggtggacatg 193
           || || ||| |||| ||||| |||||||||||| | |||||||| || | ||||||||||
Sbjct: 61  caggcgaagctgctcaagacgcagaagttcgcgcccgagcttgaacacctggtggacatg 120

                                                                       
Query: 194 tcaaaggtgaagatggacgtgatgaagccgtggattgccacacgggtcactgagcttctt 253
            | |||||||||||||| |||||||| || ||||| || || || ||||| ||||| || 
Sbjct: 121 actaaggtgaagatggatgtgatgaaaccatggatcgcgacccgtgtcaccgagctccta 180

                                                                       
Query: 254 gggttcgaggacgaagtgcttatcaacttcatctacggcctgctcgatgtgaaggaggtg 313
           |||||||||||||||||||| |||||||||||||||||||| ||||| | |||||||| |
Sbjct: 181 gggttcgaggacgaagtgctcatcaacttcatctacggcctcctcgaagagaaggaggcg 240

                                                                       
Query: 314 gacgggaagtacatacagatccagctgacggggttcatggagaag-atacaataaagttc 372
           || || ||| | |||||||| |||||||| || |||||||||||| | ||| | ||||||
Sbjct: 241 gatggaaagaagatacagatacagctgacaggattcatggagaagaacacagtgaagttc 300

                                                                     
Query: 373 atgagggagctgtggagcctccttctaagtgcgcagcagaatgccagtggtgtgcccc 430
           |||| |||||||||||||||||| || ||||| || |||||||| ||||| |||||||
Sbjct: 301 atgaaggagctgtggagcctcctactcagtgcacaacagaatgctagtggggtgcccc 358
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  125 bits (63), Expect = 1e-25
 Identities = 105/119 (88%)
 Strand = Plus / Minus

                                                                           
Query: 182     caggtggacatgtcaaaggtgaagatggacgtgatgaagccgtggattgccacacgggtc 241
               |||||||||||| | |||||||||||||| |||||||| || ||||| || || || |||
Sbjct: 9007125 caggtggacatgactaaggtgaagatggatgtgatgaaaccatggatcgcgacccgtgtc 9007066

                                                                          
Query: 242     actgagcttcttgggttcgaggacgaagtgcttatcaacttcatctacggcctgctcga 300
               || ||||| || |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 9007065 accgagctcctagggttcgaggacgaagtgctcatcaacttcatctacggcctcctcga 9007007



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 92/106 (86%), Gaps = 1/106 (0%)
 Strand = Plus / Minus

                                                                           
Query: 326     atacagatccagctgacggggttcatggagaagat-acaataaagttcatgagggagctg 384
               |||||||| |||||||| || |||||||||||||  ||| | |||||||||| |||||||
Sbjct: 9006427 atacagatacagctgacaggattcatggagaagaacacagtgaagttcatgaaggagctg 9006368

                                                             
Query: 385     tggagcctccttctaagtgcgcagcagaatgccagtggtgtgcccc 430
               ||||||||||| || ||||| || |||||||| ||||| |||||||
Sbjct: 9006367 tggagcctcctactcagtgcacaacagaatgctagtggggtgcccc 9006322



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 73/84 (86%)
 Strand = Plus / Minus

                                                                           
Query: 94      ggggacgtcggccgaccaggataccagattctccaacaagcatgccaagttgctgaagac 153
               ||||||||||||||| ||||| ||| | |||||||||||||| || ||| |||| |||||
Sbjct: 9007336 ggggacgtcggccgatcaggacacccgtttctccaacaagcaggcgaagctgctcaagac 9007277

                                       
Query: 154     acagaagttcgcgtctgagcttga 177
                |||||||||||| | ||||||||
Sbjct: 9007276 gcagaagttcgcgcccgagcttga 9007253
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>gb|AC135209.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0071M09,
              complete sequence
          Length = 143595

 Score =  125 bits (63), Expect = 1e-25
 Identities = 105/119 (88%)
 Strand = Plus / Minus

                                                                          
Query: 182    caggtggacatgtcaaaggtgaagatggacgtgatgaagccgtggattgccacacgggtc 241
              |||||||||||| | |||||||||||||| |||||||| || ||||| || || || |||
Sbjct: 131986 caggtggacatgactaaggtgaagatggatgtgatgaaaccatggatcgcgacccgtgtc 131927

                                                                         
Query: 242    actgagcttcttgggttcgaggacgaagtgcttatcaacttcatctacggcctgctcga 300
              || ||||| || |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 131926 accgagctcctagggttcgaggacgaagtgctcatcaacttcatctacggcctcctcga 131868



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 92/106 (86%), Gaps = 1/106 (0%)
 Strand = Plus / Minus

                                                                          
Query: 326    atacagatccagctgacggggttcatggagaagat-acaataaagttcatgagggagctg 384
              |||||||| |||||||| || |||||||||||||  ||| | |||||||||| |||||||
Sbjct: 131288 atacagatacagctgacaggattcatggagaagaacacagtgaagttcatgaaggagctg 131229

                                                            
Query: 385    tggagcctccttctaagtgcgcagcagaatgccagtggtgtgcccc 430
              ||||||||||| || ||||| || |||||||| ||||| |||||||
Sbjct: 131228 tggagcctcctactcagtgcacaacagaatgctagtggggtgcccc 131183



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 73/84 (86%)
 Strand = Plus / Minus

                                                                          
Query: 94     ggggacgtcggccgaccaggataccagattctccaacaagcatgccaagttgctgaagac 153
              ||||||||||||||| ||||| ||| | |||||||||||||| || ||| |||| |||||
Sbjct: 132197 ggggacgtcggccgatcaggacacccgtttctccaacaagcaggcgaagctgctcaagac 132138

                                      
Query: 154    acagaagttcgcgtctgagcttga 177
               |||||||||||| | ||||||||
Sbjct: 132137 gcagaagttcgcgcccgagcttga 132114
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>gb|AC135207.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1261C08,
             complete sequence
          Length = 99910

 Score =  125 bits (63), Expect = 1e-25
 Identities = 105/119 (88%)
 Strand = Plus / Minus

                                                                         
Query: 182   caggtggacatgtcaaaggtgaagatggacgtgatgaagccgtggattgccacacgggtc 241
             |||||||||||| | |||||||||||||| |||||||| || ||||| || || || |||
Sbjct: 14161 caggtggacatgactaaggtgaagatggatgtgatgaaaccatggatcgcgacccgtgtc 14102

                                                                        
Query: 242   actgagcttcttgggttcgaggacgaagtgcttatcaacttcatctacggcctgctcga 300
             || ||||| || |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 14101 accgagctcctagggttcgaggacgaagtgctcatcaacttcatctacggcctcctcga 14043



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 92/106 (86%), Gaps = 1/106 (0%)
 Strand = Plus / Minus

                                                                         
Query: 326   atacagatccagctgacggggttcatggagaagat-acaataaagttcatgagggagctg 384
             |||||||| |||||||| || |||||||||||||  ||| | |||||||||| |||||||
Sbjct: 13463 atacagatacagctgacaggattcatggagaagaacacagtgaagttcatgaaggagctg 13404

                                                           
Query: 385   tggagcctccttctaagtgcgcagcagaatgccagtggtgtgcccc 430
             ||||||||||| || ||||| || |||||||| ||||| |||||||
Sbjct: 13403 tggagcctcctactcagtgcacaacagaatgctagtggggtgcccc 13358



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 73/84 (86%)
 Strand = Plus / Minus

                                                                         
Query: 94    ggggacgtcggccgaccaggataccagattctccaacaagcatgccaagttgctgaagac 153
             ||||||||||||||| ||||| ||| | |||||||||||||| || ||| |||| |||||
Sbjct: 14372 ggggacgtcggccgatcaggacacccgtttctccaacaagcaggcgaagctgctcaagac 14313

                                     
Query: 154   acagaagttcgcgtctgagcttga 177
              |||||||||||| | ||||||||
Sbjct: 14312 gcagaagttcgcgcccgagcttga 14289
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  125 bits (63), Expect = 1e-25
 Identities = 105/119 (88%)
 Strand = Plus / Minus

                                                                           
Query: 182     caggtggacatgtcaaaggtgaagatggacgtgatgaagccgtggattgccacacgggtc 241
               |||||||||||| | |||||||||||||| |||||||| || ||||| || || || |||
Sbjct: 9004960 caggtggacatgactaaggtgaagatggatgtgatgaaaccatggatcgcgacccgtgtc 9004901

                                                                          
Query: 242     actgagcttcttgggttcgaggacgaagtgcttatcaacttcatctacggcctgctcga 300
               || ||||| || |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 9004900 accgagctcctagggttcgaggacgaagtgctcatcaacttcatctacggcctcctcga 9004842



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 92/106 (86%), Gaps = 1/106 (0%)
 Strand = Plus / Minus

                                                                           
Query: 326     atacagatccagctgacggggttcatggagaagat-acaataaagttcatgagggagctg 384
               |||||||| |||||||| || |||||||||||||  ||| | |||||||||| |||||||
Sbjct: 9004262 atacagatacagctgacaggattcatggagaagaacacagtgaagttcatgaaggagctg 9004203

                                                             
Query: 385     tggagcctccttctaagtgcgcagcagaatgccagtggtgtgcccc 430
               ||||||||||| || ||||| || |||||||| ||||| |||||||
Sbjct: 9004202 tggagcctcctactcagtgcacaacagaatgctagtggggtgcccc 9004157



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 73/84 (86%)
 Strand = Plus / Minus

                                                                           
Query: 94      ggggacgtcggccgaccaggataccagattctccaacaagcatgccaagttgctgaagac 153
               ||||||||||||||| ||||| ||| | |||||||||||||| || ||| |||| |||||
Sbjct: 9005171 ggggacgtcggccgatcaggacacccgtttctccaacaagcaggcgaagctgctcaagac 9005112

                                       
Query: 154     acagaagttcgcgtctgagcttga 177
                |||||||||||| | ||||||||
Sbjct: 9005111 gcagaagttcgcgcccgagcttga 9005088
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>gb|AC157320.2| Zea mays clone ZMMBBb-7C14, complete sequence
          Length = 132140

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 78/89 (87%)
 Strand = Plus / Plus

                                                                         
Query: 94    ggggacgtcggccgaccaggataccagattctccaacaagcatgccaagttgctgaagac 153
             |||||||||  | ||||||||||| || ||||| || ||| | ||||||||||| |||||
Sbjct: 76746 ggggacgtccactgaccaggatacaagcttctcaaataagtaagccaagttgctcaagac 76805

                                          
Query: 154   acagaagttcgcgtctgagcttgaccatc 182
              ||||||||||||||||||||||||||||
Sbjct: 76806 gcagaagttcgcgtctgagcttgaccatc 76834



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 60/66 (90%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                         
Query: 193   gtcaaaggtgaagatggacgtgatgaagccgtggattgccacacgggtcactgagcttct 252
             ||||||||| ||| |||||||||||||||| ||||||||||  |||||||||||||| ||
Sbjct: 76978 gtcaaaggtcaagttggacgtgatgaagcc-tggattgccaagcgggtcactgagctact 77036

                   
Query: 253   tgggtt 258
             ||||||
Sbjct: 77037 tgggtt 77042
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>ref|NM_128477.2| Arabidopsis thaliana unknown protein AT2G29210 mRNA, complete cds
          Length = 2913

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 80/98 (81%)
 Strand = Plus / Plus

                                                                       
Query: 200 gtgaagatggacgtgatgaagccgtggattgccacacgggtcactgagcttcttgggttc 259
           ||||||||||| || ||||| || |||||||| ||  | |||||||||||||||||  | 
Sbjct: 223 gtgaagatggatgttatgaaaccttggattgcgactagagtcactgagcttcttggtatt 282

                                                 
Query: 260 gaggacgaagtgcttatcaacttcatctacggcctgct 297
           || || |||||||| || ||||| ||||| || |||||
Sbjct: 283 gaagatgaagtgctgattaactttatctatggtctgct 320
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>gb|BT000633.1| Arabidopsis thaliana putative proline-rich protein
           (At2g29210/F16P2.41) mRNA, complete cds
          Length = 2637

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 80/98 (81%)
 Strand = Plus / Plus

                                                                       
Query: 200 gtgaagatggacgtgatgaagccgtggattgccacacgggtcactgagcttcttgggttc 259
           ||||||||||| || ||||| || |||||||| ||  | |||||||||||||||||  | 
Sbjct: 127 gtgaagatggatgttatgaaaccttggattgcgactagagtcactgagcttcttggtatt 186

                                                 
Query: 260 gaggacgaagtgcttatcaacttcatctacggcctgct 297
           || || |||||||| || ||||| ||||| || |||||
Sbjct: 187 gaagatgaagtgctgattaactttatctatggtctgct 224
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>gb|AY125501.1| Arabidopsis thaliana At2g29210/F16P2.41 mRNA, complete cds
          Length = 2884

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 80/98 (81%)
 Strand = Plus / Plus

                                                                       
Query: 200 gtgaagatggacgtgatgaagccgtggattgccacacgggtcactgagcttcttgggttc 259
           ||||||||||| || ||||| || |||||||| ||  | |||||||||||||||||  | 
Sbjct: 223 gtgaagatggatgttatgaaaccttggattgcgactagagtcactgagcttcttggtatt 282

                                                 
Query: 260 gaggacgaagtgcttatcaacttcatctacggcctgct 297
           || || |||||||| || ||||| ||||| || |||||
Sbjct: 283 gaagatgaagtgctgattaactttatctatggtctgct 320
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>gb|AC004561.3| Arabidopsis thaliana chromosome 2 clone F16P2 map ve014, complete
              sequence
          Length = 131743

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 80/98 (81%)
 Strand = Plus / Minus

                                                                          
Query: 200    gtgaagatggacgtgatgaagccgtggattgccacacgggtcactgagcttcttgggttc 259
              ||||||||||| || ||||| || |||||||| ||  | |||||||||||||||||  | 
Sbjct: 101175 gtgaagatggatgttatgaaaccttggattgcgactagagtcactgagcttcttggtatt 101116

                                                    
Query: 260    gaggacgaagtgcttatcaacttcatctacggcctgct 297
              || || |||||||| || ||||| ||||| || |||||
Sbjct: 101115 gaagatgaagtgctgattaactttatctatggtctgct 101078
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>emb|AJ292982.1|ATH292982 Arabidopsis thaliana mRNA for SRM102
          Length = 2883

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 80/98 (81%)
 Strand = Plus / Plus

                                                                       
Query: 200 gtgaagatggacgtgatgaagccgtggattgccacacgggtcactgagcttcttgggttc 259
           ||||||||||| || ||||| || |||||||| ||  | |||||||||||||||||  | 
Sbjct: 223 gtgaagatggatgttatgaaaccttggattgcgactagagtcactgagcttcttggtatt 282

                                                 
Query: 260 gaggacgaagtgcttatcaacttcatctacggcctgct 297
           || || |||||||| || ||||| ||||| || |||||
Sbjct: 283 gaagatgaagtgctgattaactttatctatggtctgct 320
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>ref|XM_705790.1| Candida albicans SC5314 putative transcription factor (CaO19.9381),
           mRNA
          Length = 2523

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 350 atggagaagatacaataaagtt 371
           ||||||||||||||||||||||
Sbjct: 56  atggagaagatacaataaagtt 77
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>ref|XM_705781.1| Candida albicans SC5314 putative transcription factor (CaO19.1822),
           mRNA
          Length = 2532

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 350 atggagaagatacaataaagtt 371
           ||||||||||||||||||||||
Sbjct: 56  atggagaagatacaataaagtt 77
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>gb|AE008860.1| Salmonella typhimurium LT2, section 164 of 220 of the complete genome
          Length = 21321

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 172  gcttgaccatcaggtggacat 192
            |||||||||||||||||||||
Sbjct: 3393 gcttgaccatcaggtggacat 3413
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>emb|AL627281.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
              complete chromosome; segment 17/20
          Length = 265050

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 172    gcttgaccatcaggtggacat 192
              |||||||||||||||||||||
Sbjct: 219139 gcttgaccatcaggtggacat 219119
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>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 172     gcttgaccatcaggtggacat 192
               |||||||||||||||||||||
Sbjct: 4176786 gcttgaccatcaggtggacat 4176766
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>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 172     gcttgaccatcaggtggacat 192
               |||||||||||||||||||||
Sbjct: 3591946 gcttgaccatcaggtggacat 3591966
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 172     gcttgaccatcaggtggacat 192
               |||||||||||||||||||||
Sbjct: 2355107 gcttgaccatcaggtggacat 2355127
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>gb|U76993.1|STU76993 Salmonella typhimurium adenine methylase (dam) gene, complete cds
          Length = 1777

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 172  gcttgaccatcaggtggacat 192
            |||||||||||||||||||||
Sbjct: 1330 gcttgaccatcaggtggacat 1310
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>ref|NM_022020.1| Mus musculus retinol binding protein 7, cellular (Rbp7), mRNA
          Length = 596

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 136 tgccaagttgctgaagacacagaa 159
           |||||||||||||||| |||||||
Sbjct: 118 tgccaagttgctgaagccacagaa 141
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>gb|AY141971.1| Mus musculus cellular retinol binding protein type III (Rbp7) mRNA,
           complete cds
          Length = 629

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 136 tgccaagttgctgaagacacagaa 159
           |||||||||||||||| |||||||
Sbjct: 127 tgccaagttgctgaagccacagaa 150
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>emb|AL357564.17| Human DNA sequence from clone RP1-43E13 on chromosome 1 Contains the
            5' end of the gene for retinoblastoma-associated factor.
            600 (RBAF600) and the 3' end of a novel gene, complete
            sequence
          Length = 63684

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 353  gagaagatacaataaagttc 372
            ||||||||||||||||||||
Sbjct: 4971 gagaagatacaataaagttc 4990
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>gb|AC112001.6| Rattus norvegicus 2 BAC CH230-54E3 (Children's Hospital Oakland
            Research Institute) complete sequence
          Length = 225052

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 356  aagatacaataaagttcatg 375
            ||||||||||||||||||||
Sbjct: 1677 aagatacaataaagttcatg 1696
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>gb|AC118487.4| Rattus norvegicus 2 BAC CH230-285C2 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 177865

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 356    aagatacaataaagttcatg 375
              ||||||||||||||||||||
Sbjct: 177542 aagatacaataaagttcatg 177561
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>gb|AF260927.1|AF260927 Mus musculus D4Cole1e (D4Cole1e) gene, partial cds; peroxiredoxin
             V-like pseudogene, complete sequence; retinoid binding
             protein 7 (Rbp7) gene, complete cds; and ubiquitin fusion
             degradation protein 2 (Ufd2) gene, partial cds
          Length = 90497

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 136   tgccaagttgctgaagacacagaa 159
             |||||||||||||||| |||||||
Sbjct: 31096 tgccaagttgctgaagccacagaa 31119
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>gb|AF260923.1|AF260923 Mus musculus retinoid binding protein 7 (Rbp7) mRNA, complete cds
          Length = 596

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 136 tgccaagttgctgaagacacagaa 159
           |||||||||||||||| |||||||
Sbjct: 118 tgccaagttgctgaagccacagaa 141
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>gb|BC028432.1| Mus musculus retinol binding protein 7, cellular, mRNA (cDNA clone
           MGC:41075 IMAGE:1348253), complete cds
          Length = 630

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 136 tgccaagttgctgaagacacagaa 159
           |||||||||||||||| |||||||
Sbjct: 114 tgccaagttgctgaagccacagaa 137
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>dbj|AK114719.1| Ciona intestinalis cDNA, clone:cieg014j11, full insert sequence
          Length = 2569

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 140 aagttgctgaagacacagaa 159
           ||||||||||||||||||||
Sbjct: 709 aagttgctgaagacacagaa 728
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 47      gccggcggccgccgcccgtc 66
               ||||||||||||||||||||
Sbjct: 2556481 gccggcggccgccgcccgtc 2556500
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>gb|U17896.1|XMU17896 Xiphophorus maculatus ERCC2/XPD gene, complete cds
          Length = 16840

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 304  gaaggaggtggacgggaagt 323
            ||||||||||||||||||||
Sbjct: 2934 gaaggaggtggacgggaagt 2953
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>emb|AL606973.29| Mouse DNA sequence from clone RP23-173D8 on chromosome 4, complete
              sequence
          Length = 243369

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 136    tgccaagttgctgaagacacagaa 159
              |||||||||||||||| |||||||
Sbjct: 208674 tgccaagttgctgaagccacagaa 208651


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,174,105
Number of Sequences: 3902068
Number of extensions: 3174105
Number of successful extensions: 65619
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65382
Number of HSP's gapped (non-prelim): 229
length of query: 436
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 414
effective length of database: 17,147,199,772
effective search space: 7098940705608
effective search space used: 7098940705608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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