>RP54_AZOCA (P33984) RNA polymerase sigma-54 factor|
          Length = 514

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 359 PEERLGSGSEVGVSLRWGALGN 294
           P ER+G+GS  G S+ WG+ G+
Sbjct: 112 PAERIGAGSGSGSSIEWGSGGD 133


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.307    0.130    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,958,789
Number of Sequences: 219361
Number of extensions: 184732
Number of successful extensions: 338
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)