ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl47b04 |
|---|---|
| Clone Library Name | barley_pub |
>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1| Length = 1051 Score = 106 bits (265), Expect = 2e-23 Identities = 56/73 (76%), Positives = 56/73 (76%) Frame = +2 Query: 218 MLPRKREIVAGEVEDLQKKXXXXXXXXXXXXXXXXMARRGNEIDEDLHSRQLAVYGRETM 397 MLPRKREIVAGEVEDLQKK MA RGNEIDEDLHSRQLAVYGRETM Sbjct: 1 MLPRKREIVAGEVEDLQKKTRAGEGEVTREEGDAAMAGRGNEIDEDLHSRQLAVYGRETM 60 Query: 398 KRLFGSNVLVSGL 436 KRLFGSNVLVSGL Sbjct: 61 KRLFGSNVLVSGL 73
>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2| Length = 1051 Score = 104 bits (259), Expect = 1e-22 Identities = 55/73 (75%), Positives = 55/73 (75%) Frame = +2 Query: 218 MLPRKREIVAGEVEDLQKKXXXXXXXXXXXXXXXXMARRGNEIDEDLHSRQLAVYGRETM 397 MLPRKREIVAGEVEDLQKK MA RGNEIDEDLHSRQLAVYGRETM Sbjct: 1 MLPRKREIVAGEVEDLQKKTRAGEGEATREEGDAAMAGRGNEIDEDLHSRQLAVYGRETM 60 Query: 398 KRLFGSNVLVSGL 436 K LFGSNVLVSGL Sbjct: 61 KPLFGSNVLVSGL 73
>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3| Length = 1053 Score = 60.5 bits (145), Expect = 2e-09 Identities = 29/32 (90%), Positives = 31/32 (96%) Frame = +2 Query: 341 EIDEDLHSRQLAVYGRETMKRLFGSNVLVSGL 436 EIDEDLHSRQLAVYGRETM+RLF S+VLVSGL Sbjct: 45 EIDEDLHSRQLAVYGRETMRRLFASDVLVSGL 76
>UBE1_RABIT (Q29504) Ubiquitin-activating enzyme E1| Length = 1058 Score = 45.1 bits (105), Expect = 8e-05 Identities = 26/40 (65%), Positives = 30/40 (75%), Gaps = 2/40 (5%) Frame = +2 Query: 323 MARRGNE--IDEDLHSRQLAVYGRETMKRLFGSNVLVSGL 436 MA+ G+E IDE L+SRQL V G E MKRL S+VLVSGL Sbjct: 41 MAKNGSEADIDEGLYSRQLYVLGHEAMKRLQTSSVLVSGL 80
>UBE1_HUMAN (P22314) Ubiquitin-activating enzyme E1 (A1S9 protein)| Length = 1058 Score = 45.1 bits (105), Expect = 8e-05 Identities = 26/40 (65%), Positives = 30/40 (75%), Gaps = 2/40 (5%) Frame = +2 Query: 323 MARRGNE--IDEDLHSRQLAVYGRETMKRLFGSNVLVSGL 436 MA+ G+E IDE L+SRQL V G E MKRL S+VLVSGL Sbjct: 41 MAKNGSEADIDEGLYSRQLYVLGHEAMKRLQTSSVLVSGL 80
>UBE1_MOUSE (Q02053) Ubiquitin-activating enzyme E1 1| Length = 1058 Score = 43.1 bits (100), Expect = 3e-04 Identities = 25/40 (62%), Positives = 29/40 (72%), Gaps = 2/40 (5%) Frame = +2 Query: 323 MARRGNE--IDEDLHSRQLAVYGRETMKRLFGSNVLVSGL 436 MA+ G+E IDE L+SRQL V G E MK L S+VLVSGL Sbjct: 41 MAKNGSEADIDESLYSRQLYVLGHEAMKMLQTSSVLVSGL 80
>UBA1_YEAST (P22515) Ubiquitin-activating enzyme E1 1| Length = 1024 Score = 38.9 bits (89), Expect = 0.005 Identities = 19/32 (59%), Positives = 24/32 (75%) Frame = +2 Query: 341 EIDEDLHSRQLAVYGRETMKRLFGSNVLVSGL 436 EIDE L+SRQL V G+E M ++ SNVL+ GL Sbjct: 13 EIDESLYSRQLYVLGKEAMLKMQTSNVLILGL 44
>UBA1_SCHPO (O94609) Ubiquitin-activating enzyme E1 1 (Poly(A)+ RNA transport| protein 3) Length = 1012 Score = 38.9 bits (89), Expect = 0.005 Identities = 19/32 (59%), Positives = 23/32 (71%) Frame = +2 Query: 338 NEIDEDLHSRQLAVYGRETMKRLFGSNVLVSG 433 N IDE L+SRQL V G E MK++ SNVL+ G Sbjct: 13 NTIDEGLYSRQLYVLGHEAMKQMSQSNVLIIG 44
>UBE1L_HUMAN (P41226) Ubiquitin-activating enzyme E1 homolog (D8)| Length = 1011 Score = 38.1 bits (87), Expect = 0.009 Identities = 18/31 (58%), Positives = 24/31 (77%) Frame = +2 Query: 344 IDEDLHSRQLAVYGRETMKRLFGSNVLVSGL 436 +DE+L+SRQL V G M+R+ G+ VLVSGL Sbjct: 10 LDEELYSRQLYVLGSPAMQRIQGARVLVSGL 40
>CP2D6_HUMAN (P10635) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6) (P450-DB1)| (Debrisoquine 4-hydroxylase) Length = 497 Score = 30.8 bits (68), Expect = 1.5 Identities = 22/49 (44%), Positives = 26/49 (53%) Frame = -1 Query: 406 EALHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 260 EAL LA I +A +LVDL+ + PG LPLPG G LL V Sbjct: 4 EALVPLAVI---VAIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2DP_PIG (O46658) Cytochrome P450 2D25 (EC 1.14.14.-) (CYPIID25) (Vitamin| D(3) 25-hydroxylase) Length = 499 Score = 29.3 bits (64), Expect = 4.3 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -1 Query: 355 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 260 +LVDL+ + PG +PLPG G LLQV Sbjct: 20 LLVDLMHRRSRWAPRYPPGPMPLPGLGNLLQV 51
>CP2DH_MACFA (Q29488) Cytochrome P450 2D17 (EC 1.14.14.1) (CYPIID17)| Length = 497 Score = 29.3 bits (64), Expect = 4.3 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = -1 Query: 400 LHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 260 L L + +A +LVDL+ + PG LPLPG G LL V Sbjct: 3 LDALVPLAVTVAIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2D6_PANTR (Q2XNC8) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6)| Length = 497 Score = 29.3 bits (64), Expect = 4.3 Identities = 21/49 (42%), Positives = 25/49 (51%) Frame = -1 Query: 406 EALHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 260 EAL LA I + +LVDL+ + PG LPLPG G LL V Sbjct: 4 EALVPLAVI---VTIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2D6_PANPA (Q2XNC9) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6)| Length = 497 Score = 29.3 bits (64), Expect = 4.3 Identities = 21/49 (42%), Positives = 25/49 (51%) Frame = -1 Query: 406 EALHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 260 EAL LA I + +LVDL+ + PG LPLPG G LL V Sbjct: 4 EALVPLAVI---VTIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2DQ_RAT (P10634) Cytochrome P450 2D26 (EC 1.14.14.1) (CYPIID26) (P450-DB2)| (P450-CMF2) (Debrisoquine 4-hydroxylase) Length = 500 Score = 29.3 bits (64), Expect = 4.3 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = -1 Query: 355 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 260 +LVDLV + PG +PLPG G LLQV Sbjct: 21 LLVDLVHRHKFWTAHYPPGPVPLPGLGNLLQV 52
>YBHO_SALTY (Q8ZQP4) Putative cardiolipin synthetase ybhO (EC 2.7.8.-)| (Cardiolipin synthase) (CL synthase) Length = 413 Score = 28.9 bits (63), Expect = 5.7 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = +1 Query: 355 PAQSPARRLWPRDHEA 402 P QSPARR W R H+A Sbjct: 168 PGQSPARRWWKRHHQA 183
>YBHO_SALTI (Q8Z883) Putative cardiolipin synthetase ybhO (EC 2.7.8.-)| (Cardiolipin synthase) (CL synthase) Length = 413 Score = 28.9 bits (63), Expect = 5.7 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = +1 Query: 355 PAQSPARRLWPRDHEA 402 P QSPARR W R H+A Sbjct: 168 PGQSPARRWWKRHHQA 183
>LEU1_STRCO (O31046) 2-isopropylmalate synthase (EC 2.3.3.13)| (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase) Length = 573 Score = 28.5 bits (62), Expect = 7.4 Identities = 13/46 (28%), Positives = 21/46 (45%) Frame = +3 Query: 9 CNPVLQSHPRNPRRTVPRLLPSPTRQANPRFRGGRTRWI*RGSSRR 146 C V+ ++ P R + LP+ ++ P R W+ R SRR Sbjct: 200 CEAVMDTYQPGPGREIILNLPATVERSTPSTHADRFEWMGRNLSRR 245
>CP2DJ_CALJA (O18992) Cytochrome P450 2D19 (EC 1.14.14.1) (CYPIID19) (P450| CM2D-1) Length = 497 Score = 28.5 bits (62), Expect = 7.4 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = -1 Query: 400 LHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 260 L L + +A +LVDL+ + PG +PLPG G LL V Sbjct: 3 LDALVPLAVTVAIFVLLVDLMHRRQRWAARYPPGPMPLPGLGNLLHV 49
>PEX6_GLOLA (Q9C1E9) Peroxisomal biogenesis factor 6 (Peroxin-6) (ClaPEX6)| Length = 1388 Score = 28.1 bits (61), Expect = 9.7 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -2 Query: 84 VASGKEAGEGRSV*GFWDGTGGPD 13 V +GK G+G++V GF DGT D Sbjct: 1361 VVNGKGKGKGKAVAGFQDGTASDD 1384
>CP2DQ_MOUSE (Q8CIM7) Cytochrome P450 2D26 (EC 1.14.14.1) (CYPIID26)| Length = 500 Score = 28.1 bits (61), Expect = 9.7 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = -1 Query: 355 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 260 +LVDLV + PG +P PG G LLQV Sbjct: 21 LLVDLVHRRQRWTACYPPGPVPFPGLGNLLQV 52
>CP2DG_CAVPO (Q64403) Cytochrome P450 2D16 (EC 1.14.14.1) (CYPIID16)| Length = 500 Score = 28.1 bits (61), Expect = 9.7 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -1 Query: 370 LATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 260 +A +LVDL+ + PG +P+PG G LLQV Sbjct: 16 VAIFLLLVDLMHRRQRWAARYPPGPVPVPGLGNLLQV 52 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,396,746 Number of Sequences: 219361 Number of extensions: 831420 Number of successful extensions: 3242 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3062 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3241 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
