>UBP5_ARATH (O22207) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 5)
           (Ubiquitin-specific-processing protease 5)
           (Deubiquitinating enzyme 5) (AtUBP5)
          Length = 924

 Score = 48.1 bits (113), Expect = 9e-06
 Identities = 22/49 (44%), Positives = 29/49 (59%)
 Frame = +3

Query: 180 SSASCLPCTAEEERAAVDALTRQADANVKDGDLRYLISQSWWTNWQSYV 326
           SS+S    + EEER  +  +   A+AN K+GD  YLI+Q WW  W  YV
Sbjct: 8   SSSSSTDLSPEEERVFIRDIAIAAEANSKEGDTFYLITQRWWQEWIEYV 56

>UBP32_HUMAN (Q8NFA0) Ubiquitin carboxyl-terminal hydrolase 32 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 32)
           (Ubiquitin-specific-processing protease 32)
           (Deubiquitinating enzyme 32) (NY-REN-60 antigen)
          Length = 1604

 Score = 33.1 bits (74), Expect = 0.31
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 198 PCTAEEERAAVDA-LTRQADANVKDGDLRYLISQSWWTNWQSYV 326
           P T EEE   +   L R++   ++ G   ++IS  WW  W+ YV
Sbjct: 368 PATPEEEGQIIRGWLERESRYGLQAGHNWFIISMQWWQQWKEYV 411

>UBP15_MOUSE (Q8R5H1) Ubiquitin carboxyl-terminal hydrolase 15 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 15)
           (Ubiquitin-specific-processing protease 15)
           (Deubiquitinating enzyme 15)
          Length = 981

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
 Frame = +3

Query: 216 ERAAVDALTRQAD------ANVKDGDLRYLISQSWWTNWQSYVGLLSY 341
           E  A D  T+++D       +++ GD  YL+   W+  W+ YVG  S+
Sbjct: 3   EGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSW 50

>UBP15_HUMAN (Q9Y4E8) Ubiquitin carboxyl-terminal hydrolase 15 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 15)
           (Ubiquitin-specific-processing protease 15)
           (Deubiquitinating enzyme 15) (Unph-2) (Unph4)
          Length = 981

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
 Frame = +3

Query: 216 ERAAVDALTRQAD------ANVKDGDLRYLISQSWWTNWQSYVGLLSY 341
           E  A D  T+++D       +++ GD  YL+   W+  W+ YVG  S+
Sbjct: 3   EGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSW 50

>CATA_SALTY (P17750) Peroxidase/catalase HPI (EC 1.11.1.6)|
           (Catalase-peroxidase) (Hydroperoxidase I)
          Length = 726

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = +3

Query: 252 DANVKDGDLRYLI--SQSWW-TNWQSYVGL 332
           D +   GDL+ L+  SQ WW  +W SYVGL
Sbjct: 70  DYSALKGDLKALLTDSQPWWPADWGSYVGL 99

>CATA_SALTI (Q8Z303) Peroxidase/catalase HPI (EC 1.11.1.6)|
           (Catalase-peroxidase) (Hydroperoxidase I)
          Length = 726

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = +3

Query: 252 DANVKDGDLRYLI--SQSWW-TNWQSYVGL 332
           D +   GDL+ L+  SQ WW  +W SYVGL
Sbjct: 70  DYSALKGDLKALLTDSQPWWPADWGSYVGL 99

>SUM1_YEAST (P46676) Suppressor of mar1-1 protein (SUM1-1 protein)|
          Length = 1062

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 165 H*VSSSPSNPISRPTEIESNRIET 94
           H + SSPSNP+S+P  + ++R  T
Sbjct: 374 HQIPSSPSNPVSQPAPVRTSRSAT 397

>CLPX_HUMAN (O76031) ATP-dependent Clp protease ATP-binding subunit ClpX-like,|
           mitochondrial precursor
          Length = 633

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 18/35 (51%), Positives = 19/35 (54%)
 Frame = -3

Query: 118 DRVESDRNEPTYLGFGTSSVLFGRNGKRRSGAAEA 14
           DR+ S R    YLGFGT S L    GK R  AA A
Sbjct: 427 DRIISRRKNEKYLGFGTPSNL----GKGRRAAAAA 457

>GLI3_MOUSE (Q61602) Zinc finger protein GLI3|
          Length = 1596

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 7/41 (17%)
 Frame = +3

Query: 198  PCTAE-EERAAVDALTRQADANVKDGDL------RYLISQS 299
            PC     E  A++ALT  ADAN+ D DL      +YL SQ+
Sbjct: 1064 PCPPSITENVALEALTMDADANLNDEDLLPDDVVQYLNSQN 1104

>DNAK1_PROMA (Q7VC04) Chaperone protein dnaK1 (Heat shock protein 70-1) (Heat|
           shock 70 kDa protein 1) (HSP70-1)
          Length = 666

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +3

Query: 108 STRSQLGVRLDWRGMTIPSAEGLLSSASCLPCTAEEERAAVDALTRQADANVKD--GDLR 281
           +T S +GV    R   I +AEG  ++ S +  T E E        RQ   N K+   +L+
Sbjct: 11  TTNSVIGVLEAGRPFVIANAEGSRTTPSVIGYTKESELVVGQQARRQLVLNPKNTFSNLK 70

Query: 282 YLISQSW 302
             + +SW
Sbjct: 71  RYVGRSW 77


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,375,108
Number of Sequences: 219361
Number of extensions: 1305648
Number of successful extensions: 3368
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3368
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)