ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl47a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 0.24
2gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17... 42 0.24
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.24
4dbj|AK102218.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.24

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 0.24
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 65       atgcgggaggaggtcaggagctcgt 89
                |||||||||||||| ||||||||||
Sbjct: 32295024 atgcgggaggaggtgaggagctcgt 32295000



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>gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence
          Length = 102751

 Score = 42.1 bits (21), Expect = 0.24
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 65    atgcgggaggaggtcaggagctcgt 89
             |||||||||||||| ||||||||||
Sbjct: 28791 atgcgggaggaggtgaggagctcgt 28767



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 0.24
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 65       atgcgggaggaggtcaggagctcgt 89
                |||||||||||||| ||||||||||
Sbjct: 32385534 atgcgggaggaggtgaggagctcgt 32385510



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>dbj|AK102218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087L08, full
           insert sequence
          Length = 3325

 Score = 42.1 bits (21), Expect = 0.24
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 65  atgcgggaggaggtcaggagctcgt 89
           |||||||||||||| ||||||||||
Sbjct: 83  atgcgggaggaggtgaggagctcgt 107


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 793,695
Number of Sequences: 3902068
Number of extensions: 793695
Number of successful extensions: 26659
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26633
Number of HSP's gapped (non-prelim): 26
length of query: 89
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 68
effective length of database: 17,151,101,840
effective search space: 1166274925120
effective search space used: 1166274925120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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