Clone Name | bastl47a12 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 | 42 | 0.24 | 2 | gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17... | 42 | 0.24 | 3 | dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... | 42 | 0.24 | 4 | dbj|AK102218.1| Oryza sativa (japonica cultivar-group) cDNA clon... | 42 | 0.24 |
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 0.24 Identities = 24/25 (96%) Strand = Plus / Minus Query: 65 atgcgggaggaggtcaggagctcgt 89 |||||||||||||| |||||||||| Sbjct: 32295024 atgcgggaggaggtgaggagctcgt 32295000
>gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence Length = 102751 Score = 42.1 bits (21), Expect = 0.24 Identities = 24/25 (96%) Strand = Plus / Minus Query: 65 atgcgggaggaggtcaggagctcgt 89 |||||||||||||| |||||||||| Sbjct: 28791 atgcgggaggaggtgaggagctcgt 28767
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 0.24 Identities = 24/25 (96%) Strand = Plus / Minus Query: 65 atgcgggaggaggtcaggagctcgt 89 |||||||||||||| |||||||||| Sbjct: 32385534 atgcgggaggaggtgaggagctcgt 32385510
>dbj|AK102218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087L08, full insert sequence Length = 3325 Score = 42.1 bits (21), Expect = 0.24 Identities = 24/25 (96%) Strand = Plus / Plus Query: 65 atgcgggaggaggtcaggagctcgt 89 |||||||||||||| |||||||||| Sbjct: 83 atgcgggaggaggtgaggagctcgt 107 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 793,695 Number of Sequences: 3902068 Number of extensions: 793695 Number of successful extensions: 26659 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26633 Number of HSP's gapped (non-prelim): 26 length of query: 89 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 68 effective length of database: 17,151,101,840 effective search space: 1166274925120 effective search space used: 1166274925120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)