ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl47a07 |
|---|---|
| Clone Library Name | barley_pub |
>PRP8_MOUSE (Q99PV0) Pre-mRNA-processing-splicing factor 8 (Splicing factor Prp8)| Length = 2335 Score = 289 bits (739), Expect = 1e-78 Identities = 132/135 (97%), Positives = 134/135 (99%) Frame = +3 Query: 3 LIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSWDRGIPRINTLF 182 LIPNLYRYIQPWESEFIDSQRVWAEYALKRQEA +QNRRLTLEDLEDSWDRGIPRINTLF Sbjct: 1364 LIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLF 1423 Query: 183 QKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEG 362 QKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTD+IQALGGVEG Sbjct: 1424 QKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEG 1483 Query: 363 ILEHTLFKGTYFPTW 407 ILEHTLFKGTYFPTW Sbjct: 1484 ILEHTLFKGTYFPTW 1498
>PRP8_HUMAN (Q6P2Q9) Pre-mRNA-processing-splicing factor 8 (Splicing factor Prp8)| (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220) Length = 2335 Score = 289 bits (739), Expect = 1e-78 Identities = 132/135 (97%), Positives = 134/135 (99%) Frame = +3 Query: 3 LIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSWDRGIPRINTLF 182 LIPNLYRYIQPWESEFIDSQRVWAEYALKRQEA +QNRRLTLEDLEDSWDRGIPRINTLF Sbjct: 1364 LIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLF 1423 Query: 183 QKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEG 362 QKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTD+IQALGGVEG Sbjct: 1424 QKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEG 1483 Query: 363 ILEHTLFKGTYFPTW 407 ILEHTLFKGTYFPTW Sbjct: 1484 ILEHTLFKGTYFPTW 1498
>PRP8_CAEEL (P34369) Pre-mRNA-splicing factor 8 homolog| Length = 2329 Score = 279 bits (714), Expect = 1e-75 Identities = 124/135 (91%), Positives = 132/135 (97%) Frame = +3 Query: 3 LIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSWDRGIPRINTLF 182 LIPNLYRYIQPWE+EF+DS RVWAEYALKRQEA +QNRRLTLEDL+DSWDRGIPRINTLF Sbjct: 1357 LIPNLYRYIQPWEAEFVDSVRVWAEYALKRQEANAQNRRLTLEDLDDSWDRGIPRINTLF 1416 Query: 183 QKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEG 362 QKDRHTLAYDKGWRVRT+FK YQ+LKQNPFWWTHQRHDGKLWNLNNYRTD+IQALGGVEG Sbjct: 1417 QKDRHTLAYDKGWRVRTEFKAYQILKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEG 1476 Query: 363 ILEHTLFKGTYFPTW 407 ILEHTLF+GTYFPTW Sbjct: 1477 ILEHTLFRGTYFPTW 1491
>PRP8_YEAST (P33334) Pre-mRNA-splicing factor 8| Length = 2413 Score = 222 bits (565), Expect = 2e-58 Identities = 99/135 (73%), Positives = 115/135 (85%) Frame = +3 Query: 3 LIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSWDRGIPRINTLF 182 LIP ++RYI WE+EF+DSQRVWAEYA KRQEA QNRRL E+LE SWDRGIPRI+TLF Sbjct: 1436 LIPTIFRYITTWENEFLDSQRVWAEYATKRQEAIQQNRRLAFEELEGSWDRGIPRISTLF 1495 Query: 183 QKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEG 362 Q+DRHTLAYD+G R+R +FKQY + + +PFWWT+ HDGKLWNLN YRTDVIQALGG+E Sbjct: 1496 QRDRHTLAYDRGHRIRREFKQYSLERNSPFWWTNSHHDGKLWNLNAYRTDVIQALGGIET 1555 Query: 363 ILEHTLFKGTYFPTW 407 ILEHTLFKGT F +W Sbjct: 1556 ILEHTLFKGTGFNSW 1570
>POLG_PEV9U (O41174) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2167 Score = 31.6 bits (70), Expect = 0.47 Identities = 17/49 (34%), Positives = 27/49 (55%) Frame = -2 Query: 306 ITSHHAADVSTRMGSVSALDTA*SLSAPSTLCRRPKCGGLFGIKC*YGV 160 +TS A + +R+ S + LDT S PS + CGG+ ++C +GV Sbjct: 908 VTSRVQASIGSRLVSTTQLDTRPICSLPSGISEPGDCGGI--LRCQHGV 954
>BACA_BACLI (O68006) Bacitracin synthetase 1 (BA1) [Includes: ATP-dependent| isoleucine adenylase (IleA) (Isoleucine activase); ATP-dependent cysteine adenylase (CysA) (Cysteine activase); ATP-dependent leucine adenylase (LeuA) (Leucine activase); ATP-depe Length = 5255 Score = 28.9 bits (63), Expect = 3.0 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 5/62 (8%) Frame = +3 Query: 42 SEFIDSQRVWAEYAL-----KRQEAQSQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLA 206 SE D R+ EY+ +R E S++ LE D D I +I+ L + +RH + Sbjct: 3076 SEAADGLRLEVEYSTTLFNKERMERLSEHLISLLEQAADHPDIAINQIDVLTKGERHRVL 3135 Query: 207 YD 212 YD Sbjct: 3136 YD 3137
>TLR8_MOUSE (P58682) Toll-like receptor 8 precursor| Length = 1032 Score = 28.9 bits (63), Expect = 3.0 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 8/65 (12%) Frame = +3 Query: 69 WAEYALKRQEAQSQNRRLTLEDLEDSWDRGIPRINTLFQKDRH--------TLAYDKGWR 224 W L+ +S+++ + L E WD G+P I+ L Q T Y K W Sbjct: 887 WVINELRYHLEESEDKSVLLCLEERDWDPGLPIIDNLMQSINQSKKTIFVLTKKYAKSWN 946 Query: 225 VRTDF 239 +T F Sbjct: 947 FKTAF 951
>SWI6_SCHPO (P40381) Chromatin-associated protein swi6| Length = 328 Score = 28.9 bits (63), Expect = 3.0 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +3 Query: 111 NRRLTLEDLE--DSWDRGIPRINTLFQKDRHTLAYDKGWR 224 NR LT++ +E DSW+ + I+T+ +KD TL W+ Sbjct: 255 NRELTVKQVENYDSWEDLVSSIDTIERKDDGTLEIYLTWK 294
>GAS8_HUMAN (O95995) Growth-arrest-specific protein 8 (Growth arrest-specific| 11) Length = 478 Score = 28.1 bits (61), Expect = 5.2 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 8/92 (8%) Frame = +3 Query: 84 LKRQEAQSQ----NRRLT----LEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDF 239 LK QE S+ N RL + + + ++R + I + K L + R +T+ Sbjct: 149 LKEQELASEVVVKNLRLKHTEEITRMRNDFERQVREIEAKYDKKMKMLRDELDLRRKTEL 208 Query: 240 KQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDV 335 + + K QRH+ ++ NY D+ Sbjct: 209 HEVEERKNGQIHTLMQRHEEAFTDIKNYYNDI 240
>IP3KC_MOUSE (Q7TS72) Inositol-trisphosphate 3-kinase C (EC 2.7.1.127) (Inositol| 1,4,5-trisphosphate 3-kinase C) (IP3K-C) Length = 678 Score = 28.1 bits (61), Expect = 5.2 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 6/85 (7%) Frame = +3 Query: 84 LKRQEAQSQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQ------ 245 L++ A+ ++ R TLE+ + + LF D LA K W + DF + Sbjct: 587 LRKYVARLEDLRETLENSPFFKTHEVVGSSLLFVHDHTGLA--KVWMI--DFGKTVALPD 642 Query: 246 YQVLKQNPFWWTHQRHDGKLWNLNN 320 +Q+L W R DG LW L+N Sbjct: 643 HQMLSHRLPWTEGNREDGYLWGLDN 667
>COAA_LACPL (Q88Y75) Pantothenate kinase (EC 2.7.1.33) (Pantothenic acid| kinase) Length = 309 Score = 28.1 bits (61), Expect = 5.2 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Frame = +3 Query: 12 NLYRYI-QPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSWDRGIPRINTLFQK 188 N YR+ + W+ + ++Q A E ++ N R++L+D+ D + +P + L K Sbjct: 6 NYYRFSREQWKQFYRNNQHQVPLTAANLHEIEAFNDRISLDDVRDIY---MPFAHLLQAK 62 Query: 189 DRHTLAYDKGWRVRTDFKQYQVLKQNPF 272 H L+ WR ++ +Q+PF Sbjct: 63 YEHYLS----WRETESVFLHRQNRQSPF 86
>OBSCN_HUMAN (Q5VST9) Obscurin (Obscurin-myosin light chain kinase)| (Obscurin-MLCK) (Obscurin-RhoGEF) Length = 7968 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/47 (31%), Positives = 20/47 (42%) Frame = -3 Query: 326 SVVIQVXXXXXXXXXXXPEWVLFQHLILLKVCPHPPPFVVGQSVAVF 186 S VIQ +++ HL L+ CPH P V GQ +F Sbjct: 5695 SSVIQELLSSEQAFVEELQFLQSHHLQHLERCPHVPIAVAGQKAVIF 5741
>FIBB_PETMA (P02678) Fibrinogen beta chain [Contains: Fibrinopeptide B]| (Fragments) Length = 477 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/60 (26%), Positives = 26/60 (43%) Frame = +3 Query: 54 DSQRVWAEYALKRQEAQSQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT 233 + V+A+YA R E ++Q RL +ED + + T D T+ G + T Sbjct: 336 EGSSVYAQYASFRPENEAQGYRLWVEDYSGNAGNALLEGATQLMGDNRTMTIHNGMQFST 395
>NADB_SULSO (Q97ZC5) L-aspartate oxidase (EC 1.4.3.16) (LASPO) (Quinolinate| synthetase B) Length = 472 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +3 Query: 12 NLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDL-EDSWD 152 NL RYI WE ID + E L+ + + RL+LE++ E +W+ Sbjct: 358 NLVRYIDNWEGLSIDDVKEVIEVRLR-----NSSNRLSLEEIREYNWN 400
>IP3KC_RAT (Q80ZG2) Inositol-trisphosphate 3-kinase C (EC 2.7.1.127) (Inositol| 1,4,5-trisphosphate 3-kinase C) (IP3K-C) Length = 678 Score = 27.3 bits (59), Expect = 8.9 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 6/85 (7%) Frame = +3 Query: 84 LKRQEAQSQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQ------ 245 L++ A+ ++ R TLE+ + + LF D LA K W + DF + Sbjct: 587 LRKYVARLEDLRDTLENSPFFKTHEVVGSSLLFVHDHTGLA--KVWMI--DFGKTVALPD 642 Query: 246 YQVLKQNPFWWTHQRHDGKLWNLNN 320 +Q+L W R DG LW L+N Sbjct: 643 HQMLSHRLPWAEGNREDGYLWGLDN 667
>CXP9_CONRE (Q8I6V7) Conotoxin Rg9.1 precursor| Length = 90 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +1 Query: 184 KKTATLWPTTKGGGCGQTLSSIKC 255 +K + P KG CGQ SS+KC Sbjct: 44 RKQMSRSPLVKGAFCGQACSSVKC 67
>CATA_DESVM (Q9ZN99) Catalase (EC 1.11.1.6)| Length = 479 Score = 27.3 bits (59), Expect = 8.9 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 22/90 (24%) Frame = +3 Query: 6 IPNLYRYIQPWESE---FI--DSQRVWAEYALKRQEA------------QSQNRRLTLED 134 IP YR++ + S FI D+QR W ++ L+ Q+ +++R D Sbjct: 184 IPASYRHMHGFGSHTFSFISPDNQRYWVKFHLRTQQGIKNLTDAEAEAIVARDRESHQRD 243 Query: 135 LEDSWDRG-IPR----INTLFQKDRHTLAY 209 L DS +RG PR + + +KD L Y Sbjct: 244 LYDSIERGDFPRWTMYVQVMPEKDAEKLPY 273 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,852,535 Number of Sequences: 219361 Number of extensions: 1260822 Number of successful extensions: 3195 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3144 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3193 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
