ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl47a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YC47_SCHPO (O14053) Hypothetical WD-repeat protein C1672.07 in c... 74 6e-14
2YL409_YEAST (Q06078) Hypothetical 104.8 kDa Trp-Asp repeats-cont... 56 2e-08
3WDR36_HUMAN (Q8NI36) WD repeat-containing protein 36 (T-cell act... 54 9e-08
4TLR9_HUMAN (Q9NR96) Toll-like receptor 9 precursor (CD289 antigen) 30 1.4
5MOT2_MESAU (P53988) Monocarboxylate transporter 2 (MCT 2) 30 1.4
6TRUD_METMA (Q8Q0M2) Probable tRNA pseudouridine synthase D (EC 5... 28 5.2
7Y111_METJA (Q57575) Hypothetical protein MJ0111 28 5.2
8SYN_XYLFT (Q87A82) Asparaginyl-tRNA synthetase (EC 6.1.1.22) (As... 28 5.2
9SYN_XYLFA (Q9PAF5) Asparaginyl-tRNA synthetase (EC 6.1.1.22) (As... 28 5.2
10TM11D_RAT (Q8VHJ4) Transmembrane protease, serine 11D precursor ... 27 8.9
11SYN_YERPS (Q66CG7) Asparaginyl-tRNA synthetase (EC 6.1.1.22) (As... 27 8.9
12SYN_YERPE (P58697) Asparaginyl-tRNA synthetase (EC 6.1.1.22) (As... 27 8.9

>YC47_SCHPO (O14053) Hypothetical WD-repeat protein C1672.07 in chromosome III|
          Length = 902

 Score = 74.3 bits (181), Expect = 6e-14
 Identities = 36/85 (42%), Positives = 51/85 (60%)
 Frame = +3

Query: 132 IFEPFRAIGYITTGGVPFSLQRLGTETFVTVSVGKAFHVYNCAKLTLVLAGPQLPKKIRA 311
           I+ PFR+IG+++   VPF ++  GT   VT SVG  F  Y+C KL L+  G QL K+I  
Sbjct: 23  IYAPFRSIGHVSNA-VPFDIEARGTHFLVTTSVGNTFQTYDCEKLNLLFVGKQLDKEITC 81

Query: 312 LASFKEYTFAAYGSDIAVFXRTDLV 386
           L SFK++   A GS I  + R  ++
Sbjct: 82  LKSFKDFMLVAAGSKIFAYKRGKII 106



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>YL409_YEAST (Q06078) Hypothetical 104.8 kDa Trp-Asp repeats-containing protein|
           in RPL31B-VIP1 intergenic region
          Length = 939

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
 Frame = +3

Query: 132 IFEPFRAIGYITTGGVPFSLQRLGTETFVTVSVGKAFHVYNCAKLTLV-LAGPQLPKKIR 308
           IF PFR IG ++ G VPF+   LG+  ++   VGK F +Y+   L L+ ++  + P  I 
Sbjct: 23  IFSPFRIIGNVSNG-VPFATGTLGSTFYIVTCVGKTFQIYDANTLHLLFVSEKETPSSIV 81

Query: 309 ALASFKEYTFAAYGSDIAVFXR 374
           AL++   Y +AAY + + ++ R
Sbjct: 82  ALSAHFHYVYAAYENKVGIYKR 103



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>WDR36_HUMAN (Q8NI36) WD repeat-containing protein 36 (T-cell activation WD|
           repeat-containing protein) (TA-WDRP)
          Length = 951

 Score = 53.9 bits (128), Expect = 9e-08
 Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
 Frame = +3

Query: 132 IFEPFRAIGYITTGGVPFSLQ--RLGTETFVTVSVGKAFHVYNCAKLTLVLAGPQLPKKI 305
           +F  FRA+G + +  +P  ++   L    +VT  VGK+FH Y+  KL+LV     +P+ I
Sbjct: 69  LFAGFRALG-LFSNDIPHVVRFSALKRRFYVTTCVGKSFHTYDVQKLSLVAVSNSVPQDI 127

Query: 306 RALASFKEYTFAAYGSDIAVFXRT-DLVVTFTKH 404
             +A+     FAAYG+  + F R  ++V TF  H
Sbjct: 128 CCMAADGRLVFAAYGNVFSAFARNKEIVHTFKGH 161



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>TLR9_HUMAN (Q9NR96) Toll-like receptor 9 precursor (CD289 antigen)|
          Length = 1032

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 280 PDLNCPRRSAPLHPSRNTHLLRTEAISRFSXGLIW 384
           P + CPR    LHP   +HL R E +      L W
Sbjct: 264 PCMECPRHFPQLHPDTFSHLSRLEGLVLKDSSLSW 298



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>MOT2_MESAU (P53988) Monocarboxylate transporter 2 (MCT 2)|
          Length = 484

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 23/73 (31%), Positives = 35/73 (47%)
 Frame = +3

Query: 132 IFEPFRAIGYITTGGVPFSLQRLGTETFVTVSVGKAFHVYNCAKLTLVLAGPQLPKKIRA 311
           + E +  IG+I   G+ F+LQ   T       +GK F+        L +AG   P  + +
Sbjct: 110 VLELYLTIGFIGGLGLAFNLQPALT------IIGKYFYRRRPMANGLAMAGS--PVFLSS 161

Query: 312 LASFKEYTFAAYG 350
           LA F +Y F +YG
Sbjct: 162 LAPFNQYLFNSYG 174



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>TRUD_METMA (Q8Q0M2) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)|
           (tRNA-uridine isomerase D) (tRNA pseudouridylate
           synthase D)
          Length = 438

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 162 ITTGGVP--FSLQRLGTETFVTVSVGKAFHVYNCAKLTLVLAGPQLPKK 302
           +  GGVP  F +QR G+   VT  VGKA    N  K  L+      P++
Sbjct: 161 LAQGGVPNFFGIQRFGSVRPVTHLVGKAIVEGNFEKAALLYIAEPFPEE 209



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>Y111_METJA (Q57575) Hypothetical protein MJ0111|
          Length = 396

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 174 GVPFSLQRLGTETFVTVSVGKAFH 245
           GVPF L   G + F  V+ GKA+H
Sbjct: 141 GVPFELTLEGAKKFAEVAKGKAYH 164



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>SYN_XYLFT (Q87A82) Asparaginyl-tRNA synthetase (EC 6.1.1.22)|
           (Asparagine--tRNA ligase) (AsnRS)
          Length = 466

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 168 TGGVPFSLQRLGTETFVTVSVGKAFHVYNCAKLTLVLAGP 287
           TGG+ FS    G ETF+TVS       Y  A   +   GP
Sbjct: 192 TGGIDFSHDFFGKETFLTVSGQLNVEAYALALSKVYTFGP 231



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>SYN_XYLFA (Q9PAF5) Asparaginyl-tRNA synthetase (EC 6.1.1.22)|
           (Asparagine--tRNA ligase) (AsnRS)
          Length = 466

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 168 TGGVPFSLQRLGTETFVTVSVGKAFHVYNCAKLTLVLAGP 287
           TGG+ FS    G ETF+TVS       Y  A   +   GP
Sbjct: 192 TGGIDFSHDFFGKETFLTVSGQLNVEAYALALSKVYTFGP 231



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>TM11D_RAT (Q8VHJ4) Transmembrane protease, serine 11D precursor (EC 3.4.21.-)|
           (Airway trypsin-like protease) (AT) (Adrenal secretory
           serine protease) (AsP) [Contains: Transmembrane
           protease, serine 11D non-catalytic chain; Transmembrane
           protease, serine
          Length = 417

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 285 PQLPKKIRALASFKEYTFAAYGSDIAVFXRTDLVVTFTKH 404
           P+L  ++RA+ +  EY      +DIAV  + D  VTFT++
Sbjct: 248 PRLRVRVRAILAHAEYNSITRDNDIAV-VQLDRPVTFTRN 286



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>SYN_YERPS (Q66CG7) Asparaginyl-tRNA synthetase (EC 6.1.1.22)|
           (Asparagine--tRNA ligase) (AsnRS)
          Length = 466

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +3

Query: 168 TGGVPFSLQRLGTETFVTVSVGKAFHVYNCAKLTLVLAGP 287
           TG V FS    G E F+TVS       Y CA   +   GP
Sbjct: 192 TGAVDFSEDFFGKEAFLTVSGQLNGETYACALSKVYTFGP 231



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>SYN_YERPE (P58697) Asparaginyl-tRNA synthetase (EC 6.1.1.22)|
           (Asparagine--tRNA ligase) (AsnRS)
          Length = 466

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +3

Query: 168 TGGVPFSLQRLGTETFVTVSVGKAFHVYNCAKLTLVLAGP 287
           TG V FS    G E F+TVS       Y CA   +   GP
Sbjct: 192 TGAVDFSEDFFGKEAFLTVSGQLNGETYACALSKVYTFGP 231


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,730,872
Number of Sequences: 219361
Number of extensions: 549801
Number of successful extensions: 1513
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1509
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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