ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl47a02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK102650.1| Oryza sativa (japonica cultivar-group) cDNA clon... 244 2e-61
2dbj|AK100629.1| Oryza sativa (japonica cultivar-group) cDNA clon... 244 2e-61
3gb|AC136229.3| Oryza sativa (japonica cultivar-group) chromosome... 129 8e-27
4gb|AC130609.2| Oryza sativa (japonica cultivar-group) chromosome... 129 8e-27
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 129 8e-27
6ref|NM_187857.1| Oryza sativa (japonica cultivar-group), Ozsa830... 74 4e-10
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
8dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
9dbj|AK063298.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 4e-10
10emb|AL645527.20| Mouse DNA sequence from clone RP23-26L6 on chro... 48 0.025
11gb|AC136730.9| Mus musculus chromosome 19, clone RP23-76E22, com... 42 1.5
12gb|AC163221.4| Mus musculus chromosome 19, clone RP23-376A6, com... 42 1.5
13emb|AL136369.7| Human DNA sequence from clone RP1-251M9 on chrom... 42 1.5
14gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequ... 42 1.5
15emb|BX511120.8| Zebrafish DNA sequence from clone CH211-214C7 in... 42 1.5
16gb|AC154183.2| Mus musculus BAC clone RP23-474E16 from chromosom... 42 1.5
17emb|AL773558.14| Zebrafish DNA sequence from clone CH211-207M11 ... 42 1.5
18gb|AC111082.23| Mus musculus chromosome 17, clone RP23-140I9, co... 42 1.5
19gb|AE017045.1| Yersinia pestis biovar Mediaevails str. 91001 pla... 40 6.0
20gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
21ref|XM_415964.1| PREDICTED: Gallus gallus similar to SVH-B (LOC4... 40 6.0
22gb|AC132237.3| Mus musculus BAC clone RP24-501M9 from chromosome... 40 6.0
23gb|AC128669.4| Mus musculus BAC clone RP24-115D21 from chromosom... 40 6.0
24emb|CR931814.13| Zebrafish DNA sequence from clone DKEY-236E8 in... 40 6.0
25emb|CR855865.5| Zebrafish DNA sequence from clone DKEY-267L2 in ... 40 6.0
26emb|AL928686.2| Human DNA sequence from clone RP11-444D14 on chr... 40 6.0
27emb|AL135933.11| Human DNA sequence from clone RP4-774E4 on chro... 40 6.0
28gb|AF074611.1| Yersinia pestis KIM plasmid pMT-1, complete sequence 40 6.0
29gb|AF053947.1| Yersinia pestis KIM plasmid pMT1, complete sequence 40 6.0
30emb|AL117211.1|YPPMT1 Yersinia pestis CO92 plasmid pMT1 40 6.0
31emb|AJ698720.1| Yersinia pestis pG8786 plasmid 40 6.0
32emb|BX901909.5| Zebrafish DNA sequence from clone CH211-42I14 in... 40 6.0
33emb|BX088597.18| Zebrafish DNA sequence from clone DKEY-171P23 i... 40 6.0
34emb|BX005238.8| Zebrafish DNA sequence from clone DKEY-61P9 in l... 40 6.0
35gb|AF286884.4| Homo sapiens chromosome 8 clone RP11-597D18 map 8... 40 6.0
36gb|AC098964.4| Homo sapiens chromosome 8 clone RP11-141M14 map 8... 40 6.0
37gb|AC103840.2| Homo sapiens chromosome 8, clone RP11-317N12, com... 40 6.0
38dbj|AB048330.1| Equus caballus DNA, chromosome 18q13, microsatel... 40 6.0
39gb|AF169823.1| Spodoptera exigua nucleopolyhedrovirus complete g... 40 6.0
40gb|AC087671.9| Homo sapiens chromosome 8, clone RP11-597D18, com... 40 6.0
41gb|AC068388.7| Homo sapiens chromosome 3, clone RP11-296M9, comp... 40 6.0
42emb|AL954694.13| Zebrafish DNA sequence from clone CH211-219F7 i... 40 6.0
43emb|BX324146.10| Zebrafish DNA sequence from clone CH211-207C15 ... 40 6.0
44dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
45dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
46gb|AC021699.5|AC021699 Homo sapiens chromosome 11, clone RP11-27... 40 6.0
47gb|AC079585.3| Homo sapiens BAC clone RP11-161A24 from 2, comple... 40 6.0
48emb|BX001023.12| Zebrafish DNA sequence from clone CH211-233F10 ... 40 6.0
49dbj|AK066915.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
50emb|AL935186.22| Zebrafish DNA sequence from clone CH211-250M6 i... 40 6.0
51dbj|AK061334.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
52emb|AL591669.5| Zebrafish DNA sequence from clone BUSM1-163L24 i... 40 6.0
53emb|BX510318.4| Mouse DNA sequence from clone RP23-29O1 on chrom... 40 6.0
54gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
55gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
56emb|BX000498.1|CNS08CDO Oryza sativa chromosome 12, . BAC OSJNBa... 40 6.0
57emb|AL808116.6| Mouse DNA sequence from clone RP23-97H1 on chrom... 40 6.0 
>dbj|AK102650.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101B01, full
           insert sequence
          Length = 3311

 Score =  244 bits (123), Expect = 2e-61
 Identities = 308/370 (83%)
 Strand = Plus / Plus

                                                                       
Query: 76  ccgcctgccgagatggatgacagctgcgcggtatgcgcggacgcgctcgaatgggtggcc 135
           ||||| || |||||||| |||||||||||||| |||||||||||||| || |||||||||
Sbjct: 198 ccgcccgcggagatggacgacagctgcgcggtgtgcgcggacgcgctggagtgggtggcc 257

                                                                       
Query: 136 tacgggccatgcgggcaccgcgaggtgtgttcaacctgcgtcgtccgccttcgcttcgta 195
           |||||| | ||||| ||||||||||| || || ||||||||||| ||||| |||||||| 
Sbjct: 258 tacggggcctgcggccaccgcgaggtttgctcgacctgcgtcgttcgcctccgcttcgtg 317

                                                                       
Query: 196 ctcgaggactctctatgctgcatctgtaagatggattgcccctccgtattcgtcacaaag 255
            | |  |||   |  ||||||||||| ||||  || ||| |||||||||||||||| |||
Sbjct: 318 atgggcgacaagcactgctgcatctgcaagaccgagtgctcctccgtattcgtcaccaag 377

                                                                       
Query: 256 gccatgggagattacacaaaagtgatctccgatttctctgttttgcccactgaggcaagt 315
           || ||||| |||||||||||||||||    ||||||  | |||| ||| ||| ||||| |
Sbjct: 378 gctatgggcgattacacaaaagtgataaatgatttcaatattttcccccctgtggcaact 437

                                                                       
Query: 316 gagggaaatgtgggggagtactggtaccatgaggatacaaaggcatactttgatgatgcc 375
           |||||||| ||||||||||||||||||||||||||||   ||||||  ||||| ||||| 
Sbjct: 438 gagggaaaggtgggggagtactggtaccatgaggatagccaggcattttttgacgatgct 497

                                                                       
Query: 376 gatcattataagatgataagggcgatgtgccgactttcttgtagtgtatgtgacanagct 435
           || || || ||||||||| | || ||||| || |||||||||||||| ||||||| ||||
Sbjct: 498 gagcactacaagatgatacgagcaatgtgtcggctttcttgtagtgtgtgtgacaaagct 557

                     
Query: 436 gaggatcagg 445
           || |||||||
Sbjct: 558 gaagatcagg 567
to top
>dbj|AK100629.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109C14, full
           insert sequence
          Length = 3137

 Score =  244 bits (123), Expect = 2e-61
 Identities = 308/370 (83%)
 Strand = Plus / Plus

                                                                       
Query: 76  ccgcctgccgagatggatgacagctgcgcggtatgcgcggacgcgctcgaatgggtggcc 135
           ||||| || |||||||| |||||||||||||| |||||||||||||| || |||||||||
Sbjct: 150 ccgcccgcggagatggacgacagctgcgcggtgtgcgcggacgcgctggagtgggtggcc 209

                                                                       
Query: 136 tacgggccatgcgggcaccgcgaggtgtgttcaacctgcgtcgtccgccttcgcttcgta 195
           |||||| | ||||| ||||||||||| || || ||||||||||| ||||| |||||||| 
Sbjct: 210 tacggggcctgcggccaccgcgaggtttgctcgacctgcgtcgttcgcctccgcttcgtg 269

                                                                       
Query: 196 ctcgaggactctctatgctgcatctgtaagatggattgcccctccgtattcgtcacaaag 255
            | |  |||   |  ||||||||||| ||||  || ||| |||||||||||||||| |||
Sbjct: 270 atgggcgacaagcactgctgcatctgcaagaccgagtgctcctccgtattcgtcaccaag 329

                                                                       
Query: 256 gccatgggagattacacaaaagtgatctccgatttctctgttttgcccactgaggcaagt 315
           || ||||| |||||||||||||||||    ||||||  | |||| ||| ||| ||||| |
Sbjct: 330 gctatgggcgattacacaaaagtgataaatgatttcaatattttcccccctgtggcaact 389

                                                                       
Query: 316 gagggaaatgtgggggagtactggtaccatgaggatacaaaggcatactttgatgatgcc 375
           |||||||| ||||||||||||||||||||||||||||   ||||||  ||||| ||||| 
Sbjct: 390 gagggaaaggtgggggagtactggtaccatgaggatagccaggcattttttgacgatgct 449

                                                                       
Query: 376 gatcattataagatgataagggcgatgtgccgactttcttgtagtgtatgtgacanagct 435
           || || || ||||||||| | || ||||| || |||||||||||||| ||||||| ||||
Sbjct: 450 gagcactacaagatgatacgagcaatgtgtcggctttcttgtagtgtgtgtgacaaagct 509

                     
Query: 436 gaggatcagg 445
           || |||||||
Sbjct: 510 gaagatcagg 519
to top
>gb|AC136229.3| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0690B12,
              complete sequence
          Length = 135323

 Score =  129 bits (65), Expect = 8e-27
 Identities = 160/192 (83%)
 Strand = Plus / Plus

                                                                          
Query: 254    aggccatgggagattacacaaaagtgatctccgatttctctgttttgcccactgaggcaa 313
              |||| ||||| |||||||||||||||||    ||||||  | |||| ||| ||| |||||
Sbjct: 130865 aggctatgggcgattacacaaaagtgataaatgatttcaatattttcccccctgtggcaa 130924

                                                                          
Query: 314    gtgagggaaatgtgggggagtactggtaccatgaggatacaaaggcatactttgatgatg 373
               ||||||||| ||||||||||||||||||||||||||||   ||||||  ||||| ||||
Sbjct: 130925 ctgagggaaaggtgggggagtactggtaccatgaggatagccaggcattttttgacgatg 130984

                                                                          
Query: 374    ccgatcattataagatgataagggcgatgtgccgactttcttgtagtgtatgtgacanag 433
              | || || || ||||||||| | || ||||| || |||||||||||||| ||||||| ||
Sbjct: 130985 ctgagcactacaagatgatacgagcaatgtgtcggctttcttgtagtgtgtgtgacaaag 131044

                          
Query: 434    ctgaggatcagg 445
              |||| |||||||
Sbjct: 131045 ctgaagatcagg 131056



 Score =  125 bits (63), Expect = 1e-25
 Identities = 105/119 (88%)
 Strand = Plus / Plus

                                                                          
Query: 76     ccgcctgccgagatggatgacagctgcgcggtatgcgcggacgcgctcgaatgggtggcc 135
              ||||| || |||||||| |||||||||||||| |||||||||||||| || |||||||||
Sbjct: 129884 ccgcccgcggagatggacgacagctgcgcggtgtgcgcggacgcgctggagtgggtggcc 129943

                                                                         
Query: 136    tacgggccatgcgggcaccgcgaggtgtgttcaacctgcgtcgtccgccttcgcttcgt 194
              |||||| | ||||| ||||||||||| || || ||||||||||| ||||| ||||||||
Sbjct: 129944 tacggggcctgcggccaccgcgaggtttgctcgacctgcgtcgttcgcctccgcttcgt 130002
to top
>gb|AC130609.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0048F12,
            complete sequence
          Length = 139627

 Score =  129 bits (65), Expect = 8e-27
 Identities = 160/192 (83%)
 Strand = Plus / Plus

                                                                        
Query: 254  aggccatgggagattacacaaaagtgatctccgatttctctgttttgcccactgaggcaa 313
            |||| ||||| |||||||||||||||||    ||||||  | |||| ||| ||| |||||
Sbjct: 5806 aggctatgggcgattacacaaaagtgataaatgatttcaatattttcccccctgtggcaa 5865

                                                                        
Query: 314  gtgagggaaatgtgggggagtactggtaccatgaggatacaaaggcatactttgatgatg 373
             ||||||||| ||||||||||||||||||||||||||||   ||||||  ||||| ||||
Sbjct: 5866 ctgagggaaaggtgggggagtactggtaccatgaggatagccaggcattttttgacgatg 5925

                                                                        
Query: 374  ccgatcattataagatgataagggcgatgtgccgactttcttgtagtgtatgtgacanag 433
            | || || || ||||||||| | || ||||| || |||||||||||||| ||||||| ||
Sbjct: 5926 ctgagcactacaagatgatacgagcaatgtgtcggctttcttgtagtgtgtgtgacaaag 5985

                        
Query: 434  ctgaggatcagg 445
            |||| |||||||
Sbjct: 5986 ctgaagatcagg 5997



 Score =  125 bits (63), Expect = 1e-25
 Identities = 105/119 (88%)
 Strand = Plus / Plus

                                                                        
Query: 76   ccgcctgccgagatggatgacagctgcgcggtatgcgcggacgcgctcgaatgggtggcc 135
            ||||| || |||||||| |||||||||||||| |||||||||||||| || |||||||||
Sbjct: 4825 ccgcccgcggagatggacgacagctgcgcggtgtgcgcggacgcgctggagtgggtggcc 4884

                                                                       
Query: 136  tacgggccatgcgggcaccgcgaggtgtgttcaacctgcgtcgtccgccttcgcttcgt 194
            |||||| | ||||| ||||||||||| || || ||||||||||| ||||| ||||||||
Sbjct: 4885 tacggggcctgcggccaccgcgaggtttgctcgacctgcgtcgttcgcctccgcttcgt 4943
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  129 bits (65), Expect = 8e-27
 Identities = 160/192 (83%)
 Strand = Plus / Plus

                                                                            
Query: 254      aggccatgggagattacacaaaagtgatctccgatttctctgttttgcccactgaggcaa 313
                |||| ||||| |||||||||||||||||    ||||||  | |||| ||| ||| |||||
Sbjct: 11561371 aggctatgggcgattacacaaaagtgataaatgatttcaatattttcccccctgtggcaa 11561430

                                                                            
Query: 314      gtgagggaaatgtgggggagtactggtaccatgaggatacaaaggcatactttgatgatg 373
                 ||||||||| ||||||||||||||||||||||||||||   ||||||  ||||| ||||
Sbjct: 11561431 ctgagggaaaggtgggggagtactggtaccatgaggatagccaggcattttttgacgatg 11561490

                                                                            
Query: 374      ccgatcattataagatgataagggcgatgtgccgactttcttgtagtgtatgtgacanag 433
                | || || || ||||||||| | || ||||| || |||||||||||||| ||||||| ||
Sbjct: 11561491 ctgagcactacaagatgatacgagcaatgtgtcggctttcttgtagtgtgtgtgacaaag 11561550

                            
Query: 434      ctgaggatcagg 445
                |||| |||||||
Sbjct: 11561551 ctgaagatcagg 11561562



 Score =  125 bits (63), Expect = 1e-25
 Identities = 105/119 (88%)
 Strand = Plus / Plus

                                                                            
Query: 76       ccgcctgccgagatggatgacagctgcgcggtatgcgcggacgcgctcgaatgggtggcc 135
                ||||| || |||||||| |||||||||||||| |||||||||||||| || |||||||||
Sbjct: 11560390 ccgcccgcggagatggacgacagctgcgcggtgtgcgcggacgcgctggagtgggtggcc 11560449

                                                                           
Query: 136      tacgggccatgcgggcaccgcgaggtgtgttcaacctgcgtcgtccgccttcgcttcgt 194
                |||||| | ||||| ||||||||||| || || ||||||||||| ||||| ||||||||
Sbjct: 11560450 tacggggcctgcggccaccgcgaggtttgctcgacctgcgtcgttcgcctccgcttcgt 11560508
to top
>ref|NM_187857.1| Oryza sativa (japonica cultivar-group), Ozsa8301 predicted mRNA
          Length = 2199

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 94/113 (83%)
 Strand = Plus / Plus

                                                                       
Query: 82  gccgagatggatgacagctgcgcggtatgcgcggacgcgctcgaatgggtggcctacggg 141
           ||||| ||||| |||  |||||| || ||||||||  ||||||| |||||||||||||| 
Sbjct: 181 gccgacatggacgacgcctgcgccgtctgcgcggagccgctcgagtgggtggcctacggc 240

                                                                
Query: 142 ccatgcgggcaccgcgaggtgtgttcaacctgcgtcgtccgccttcgcttcgt 194
            | ||||  ||||||||||| || || |||||||||| |||||| ||||||||
Sbjct: 241 gcctgcgcccaccgcgaggtctgctccacctgcgtcgcccgcctccgcttcgt 293
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 94/113 (83%)
 Strand = Plus / Plus

                                                                           
Query: 82      gccgagatggatgacagctgcgcggtatgcgcggacgcgctcgaatgggtggcctacggg 141
               ||||| ||||| |||  |||||| || ||||||||  ||||||| |||||||||||||| 
Sbjct: 8296806 gccgacatggacgacgcctgcgccgtctgcgcggagccgctcgagtgggtggcctacggc 8296865

                                                                    
Query: 142     ccatgcgggcaccgcgaggtgtgttcaacctgcgtcgtccgccttcgcttcgt 194
                | ||||  ||||||||||| || || |||||||||| |||||| ||||||||
Sbjct: 8296866 gcctgcgcccaccgcgaggtctgctccacctgcgtcgcccgcctccgcttcgt 8296918
to top
>dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0434D08
          Length = 161266

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 94/113 (83%)
 Strand = Plus / Plus

                                                                         
Query: 82    gccgagatggatgacagctgcgcggtatgcgcggacgcgctcgaatgggtggcctacggg 141
             ||||| ||||| |||  |||||| || ||||||||  ||||||| |||||||||||||| 
Sbjct: 90737 gccgacatggacgacgcctgcgccgtctgcgcggagccgctcgagtgggtggcctacggc 90796

                                                                  
Query: 142   ccatgcgggcaccgcgaggtgtgttcaacctgcgtcgtccgccttcgcttcgt 194
              | ||||  ||||||||||| || || |||||||||| |||||| ||||||||
Sbjct: 90797 gcctgcgcccaccgcgaggtctgctccacctgcgtcgcccgcctccgcttcgt 90849
to top
>dbj|AK063298.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-E12, full
           insert sequence
          Length = 2616

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 94/113 (83%)
 Strand = Plus / Plus

                                                                       
Query: 82  gccgagatggatgacagctgcgcggtatgcgcggacgcgctcgaatgggtggcctacggg 141
           ||||| ||||| |||  |||||| || ||||||||  ||||||| |||||||||||||| 
Sbjct: 192 gccgacatggacgacgcctgcgccgtctgcgcggagccgctcgagtgggtggcctacggc 251

                                                                
Query: 142 ccatgcgggcaccgcgaggtgtgttcaacctgcgtcgtccgccttcgcttcgt 194
            | ||||  ||||||||||| || || |||||||||| |||||| ||||||||
Sbjct: 252 gcctgcgcccaccgcgaggtctgctccacctgcgtcgcccgcctccgcttcgt 304
to top
>emb|AL645527.20| Mouse DNA sequence from clone RP23-26L6 on chromosome 11 Contains the
              Vamp2 gene for vesicle-associated membrane 2, the Per1 gene
              for period homolog 1 (Drosophila), the Hes7 gene for hairy
              and enhancer of split 7 (Drosophila), the Aloxe3 gene for
              arachidonate lipoxygenase 3, the Alox12b gene for
              arachidonate 12-lipoxygenase 12R type, the Alox15b gene for
              arachidonate 15-lipoxygenase second type, the Gucy2e gene
              for guanylate cyclase 2e, a novel gene, the gene for
              LYST-interacting protein LIP8 (Lip8-pending), the gene for
              the likely ortholog of H. sapiens trafficking protein
              particle complex 1 (TRAPPC1)), the Kcnab3 gene for
              potassium voltage-gated channel shaker-related subfamily
              beta member 3, a novel gene, the 3' end of the Chd3 gene
              for chromodomain helicase DNA binding protein 3 and six CpG
              islands, complete sequence
          Length = 261224

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 308    aggcaagtgagggaaatgtggggg 331
              ||||||||||||||||||||||||
Sbjct: 184888 aggcaagtgagggaaatgtggggg 184911
to top
>gb|AC136730.9| Mus musculus chromosome 19, clone RP23-76E22, complete sequence
          Length = 146616

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 203   actctctatgctgcatctgta 223
             |||||||||||||||||||||
Sbjct: 78407 actctctatgctgcatctgta 78427
to top
>gb|AC163221.4| Mus musculus chromosome 19, clone RP23-376A6, complete sequence
          Length = 188740

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 203    actctctatgctgcatctgta 223
              |||||||||||||||||||||
Sbjct: 142903 actctctatgctgcatctgta 142923
to top
>emb|AL136369.7| Human DNA sequence from clone RP1-251M9 on chromosome 10 Contains three
             novel genes, complete sequence
          Length = 110952

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 342   ccatgaggatacaaaggcata 362
             |||||||||||||||||||||
Sbjct: 86927 ccatgaggatacaaaggcata 86947
to top
>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence
          Length = 642517

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 112   gcggacgcgctcgaatgggtg 132
             |||||||||||||||||||||
Sbjct: 86415 gcggacgcgctcgaatgggtg 86395
to top
>emb|BX511120.8| Zebrafish DNA sequence from clone CH211-214C7 in linkage group 1,
            complete sequence
          Length = 204893

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 352  acaaaggcatactttgatgatgccg 376
            ||||||||||| |||||||||||||
Sbjct: 6151 acaaaggcatagtttgatgatgccg 6127
to top
>gb|AC154183.2| Mus musculus BAC clone RP23-474E16 from chromosome 17, complete sequence
          Length = 181773

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 248    tcacaaaggccatgggagatt 268
              |||||||||||||||||||||
Sbjct: 121005 tcacaaaggccatgggagatt 121025
to top
>emb|AL773558.14| Zebrafish DNA sequence from clone CH211-207M11 in linkage group 16,
              complete sequence
          Length = 196875

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 352    acaaaggcatactttgatgatgccg 376
              ||||||||||| |||||||||||||
Sbjct: 158997 acaaaggcatattttgatgatgccg 159021
to top
>gb|AC111082.23| Mus musculus chromosome 17, clone RP23-140I9, complete sequence
          Length = 171550

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 248    tcacaaaggccatgggagatt 268
              |||||||||||||||||||||
Sbjct: 168422 tcacaaaggccatgggagatt 168402
to top
>gb|AE017045.1| Yersinia pestis biovar Mediaevails str. 91001 plasmid pMT1, complete
             sequence
          Length = 106642

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 262   ggagattacacaaaagtgat 281
             ||||||||||||||||||||
Sbjct: 54254 ggagattacacaaaagtgat 54235
to top
>gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0045P14,
              complete sequence
          Length = 121894

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 287    atttctctgttttgcccact 306
              ||||||||||||||||||||
Sbjct: 106625 atttctctgttttgcccact 106606
to top
>ref|XM_415964.1| PREDICTED: Gallus gallus similar to SVH-B (LOC417720), mRNA
          Length = 1586

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 371 atgccgatcattataagatgataa 394
           ||||| ||||||||||||||||||
Sbjct: 911 atgcctatcattataagatgataa 934
to top
>gb|AC132237.3| Mus musculus BAC clone RP24-501M9 from chromosome 12, complete sequence
          Length = 212186

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 249    cacaaaggccatgggagatt 268
              ||||||||||||||||||||
Sbjct: 134767 cacaaaggccatgggagatt 134748
to top
>gb|AC128669.4| Mus musculus BAC clone RP24-115D21 from chromosome 17, complete
             sequence
          Length = 169571

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   cacaaaggccatgggagatt 268
             ||||||||||||||||||||
Sbjct: 81147 cacaaaggccatgggagatt 81128
to top
>emb|CR931814.13| Zebrafish DNA sequence from clone DKEY-236E8 in linkage group 5,
             complete sequence
          Length = 155089

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 352   acaaaggcatactttgatgatgcc 375
             ||||||||||| ||||||||||||
Sbjct: 33512 acaaaggcatattttgatgatgcc 33489



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 352   acaaaggcatactttgatgatgcc 375
             ||||||||||| ||||||||||||
Sbjct: 33129 acaaaggcatattttgatgatgcc 33106



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 352   acaaaggcatactttgatgatgcc 375
             ||||||||||| ||||||||||||
Sbjct: 32748 acaaaggcatattttgatgatgcc 32725
to top
>emb|CR855865.5| Zebrafish DNA sequence from clone DKEY-267L2 in linkage group 3,
             complete sequence
          Length = 149895

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 352   acaaaggcatactttgatga 371
             ||||||||||||||||||||
Sbjct: 78159 acaaaggcatactttgatga 78178
to top
>emb|AL928686.2| Human DNA sequence from clone RP11-444D14 on chromosome 10 Contains
            the PRKG1 gene for protein kinase cGMP-dependent type I,
            complete sequence
          Length = 11812

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 344  atgaggatacaaaggcatac 363
            ||||||||||||||||||||
Sbjct: 3555 atgaggatacaaaggcatac 3536
to top
>emb|AL135933.11| Human DNA sequence from clone RP4-774E4 on chromosome 11p13-14.2
            Contains a pseudogene similar to ribosomal protein L7a,
            STSs and GSSs, complete sequence
          Length = 111135

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 344  atgaggatacaaaggcatac 363
            ||||||||||||||||||||
Sbjct: 1248 atgaggatacaaaggcatac 1229
to top
>gb|AF074611.1| Yersinia pestis KIM plasmid pMT-1, complete sequence
          Length = 100990

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 262   ggagattacacaaaagtgat 281
             ||||||||||||||||||||
Sbjct: 99373 ggagattacacaaaagtgat 99392
to top
>gb|AF053947.1| Yersinia pestis KIM plasmid pMT1, complete sequence
          Length = 100984

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 262   ggagattacacaaaagtgat 281
             ||||||||||||||||||||
Sbjct: 49948 ggagattacacaaaagtgat 49929
to top
>emb|AL117211.1|YPPMT1 Yersinia pestis CO92 plasmid pMT1
          Length = 96210

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 262   ggagattacacaaaagtgat 281
             ||||||||||||||||||||
Sbjct: 49884 ggagattacacaaaagtgat 49865
to top
>emb|AJ698720.1| Yersinia pestis pG8786 plasmid
          Length = 137036

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 262   ggagattacacaaaagtgat 281
             ||||||||||||||||||||
Sbjct: 53390 ggagattacacaaaagtgat 53371
to top
>emb|BX901909.5| Zebrafish DNA sequence from clone CH211-42I14 in linkage group 3,
             complete sequence
          Length = 90216

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 352   acaaaggcatactttgatga 371
             ||||||||||||||||||||
Sbjct: 24328 acaaaggcatactttgatga 24347
to top
>emb|BX088597.18| Zebrafish DNA sequence from clone DKEY-171P23 in linkage group 5,
             complete sequence
          Length = 172098

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 352   acaaaggcatactttgatgatgcc 375
             ||||||||||| ||||||||||||
Sbjct: 58993 acaaaggcatattttgatgatgcc 58970



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 352   acaaaggcatactttgatgatgcc 375
             ||||||||||| ||||||||||||
Sbjct: 58610 acaaaggcatattttgatgatgcc 58587



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 352   acaaaggcatactttgatgatgcc 375
             ||||||||||| ||||||||||||
Sbjct: 58227 acaaaggcatattttgatgatgcc 58204



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 352   acaaaggcatactttgatgatgcc 375
             ||||||||||| ||||||||||||
Sbjct: 57844 acaaaggcatattttgatgatgcc 57821



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 352   acaaaggcatactttgatgatgcc 375
             ||||||||||| ||||||||||||
Sbjct: 57461 acaaaggcatattttgatgatgcc 57438



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 352   acaaaggcatactttgatgatgcc 375
             ||||||||||| ||||||||||||
Sbjct: 57080 acaaaggcatattttgatgatgcc 57057
to top
>emb|BX005238.8| Zebrafish DNA sequence from clone DKEY-61P9 in linkage group 4 Contains
             three genes for a novel protein similar to vertebrate heat
             shock 70kDa protein 12A (Hspa12a), the gene for a novel
             protein similar to vertebrate guanylate nucleotide binding
             protein family,  the gene for a novel protein containing a
             beta-ketoacyl synthase, N-terminal domain, six novel genes
             and five CpG islands, complete sequence
          Length = 166866

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 287   atttctctgttttgcccact 306
             ||||||||||||||||||||
Sbjct: 23100 atttctctgttttgcccact 23081
to top
>gb|AF286884.4| Homo sapiens chromosome 8 clone RP11-597D18 map 8p21-p11, complete
             sequence
          Length = 207519

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 344   atgaggatacaaaggcatac 363
             ||||||||||||||||||||
Sbjct: 27921 atgaggatacaaaggcatac 27902
to top
>gb|AC098964.4| Homo sapiens chromosome 8 clone RP11-141M14 map 8p21-p11, complete
              sequence
          Length = 151646

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 344    atgaggatacaaaggcatac 363
              ||||||||||||||||||||
Sbjct: 142847 atgaggatacaaaggcatac 142828
to top
>gb|AC103840.2| Homo sapiens chromosome 8, clone RP11-317N12, complete sequence
          Length = 172361

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 344   atgaggatacaaaggcatac 363
             ||||||||||||||||||||
Sbjct: 85427 atgaggatacaaaggcatac 85408
to top
>dbj|AB048330.1| Equus caballus DNA, chromosome 18q13, microsatellite TKY19
          Length = 526

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  acctctgccgcctgccgaga 88
           ||||||||||||||||||||
Sbjct: 94  acctctgccgcctgccgaga 113
to top
>gb|AF169823.1| Spodoptera exigua nucleopolyhedrovirus complete genome
          Length = 135611

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    cctttttcgccgccgccgac 49
             ||||||||||||||||||||
Sbjct: 44583 cctttttcgccgccgccgac 44602
to top
>gb|AC087671.9| Homo sapiens chromosome 8, clone RP11-597D18, complete sequence
          Length = 207503

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 344    atgaggatacaaaggcatac 363
              ||||||||||||||||||||
Sbjct: 179594 atgaggatacaaaggcatac 179613
to top
>gb|AC068388.7| Homo sapiens chromosome 3, clone RP11-296M9, complete sequence
          Length = 148372

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 344   atgaggatacaaaggcatac 363
             ||||||||||||||||||||
Sbjct: 28809 atgaggatacaaaggcatac 28790
to top
>emb|AL954694.13| Zebrafish DNA sequence from clone CH211-219F7 in linkage group 5,
             complete sequence
          Length = 111431

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 352   acaaaggcatactttgatga 371
             ||||||||||||||||||||
Sbjct: 69787 acaaaggcatactttgatga 69806
to top
>emb|BX324146.10| Zebrafish DNA sequence from clone CH211-207C15 in linkage group 19,
             complete sequence
          Length = 230267

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 352   acaaaggcatactttgatgatgcc 375
             ||||||||||| ||||||||||||
Sbjct: 30238 acaaaggcatagtttgatgatgcc 30261
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 36      tcgccgccgccgacccctct 55
               ||||||||||||||||||||
Sbjct: 1494441 tcgccgccgccgacccctct 1494460
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 287      atttctctgttttgcccact 306
                ||||||||||||||||||||
Sbjct: 10917105 atttctctgttttgcccact 10917086
to top
>gb|AC021699.5|AC021699 Homo sapiens chromosome 11, clone RP11-277B22, complete sequence
          Length = 163386

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 344    atgaggatacaaaggcatac 363
              ||||||||||||||||||||
Sbjct: 155565 atgaggatacaaaggcatac 155546
to top
>gb|AC079585.3| Homo sapiens BAC clone RP11-161A24 from 2, complete sequence
          Length = 63107

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 342   ccatgaggatacaaaggcat 361
             ||||||||||||||||||||
Sbjct: 44064 ccatgaggatacaaaggcat 44045
to top
>emb|BX001023.12| Zebrafish DNA sequence from clone CH211-233F10 in linkage group 5,
             complete sequence
          Length = 168064

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 352   acaaaggcatactttgatgatgcc 375
             ||||||||||| ||||||||||||
Sbjct: 99788 acaaaggcatattttgatgatgcc 99811



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 352   acaaaggcatactttgatgatgcc 375
             ||||||||||| ||||||||||||
Sbjct: 99407 acaaaggcatattttgatgatgcc 99430



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 352   acaaaggcatactttgatgatgcc 375
             ||||||||||| ||||||||||||
Sbjct: 99024 acaaaggcatattttgatgatgcc 99047
to top
>dbj|AK066915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013090C23, full
           insert sequence
          Length = 987

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 36  tcgccgccgccgacccctct 55
           ||||||||||||||||||||
Sbjct: 111 tcgccgccgccgacccctct 92
to top
>emb|AL935186.22| Zebrafish DNA sequence from clone CH211-250M6 in linkage group 4,
             complete sequence
          Length = 166476

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 287   atttctctgttttgcccact 306
             ||||||||||||||||||||
Sbjct: 37730 atttctctgttttgcccact 37711
to top
>dbj|AK061334.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-B06, full
           insert sequence
          Length = 970

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 36  tcgccgccgccgacccctct 55
           ||||||||||||||||||||
Sbjct: 116 tcgccgccgccgacccctct 97
to top
>emb|AL591669.5| Zebrafish DNA sequence from clone BUSM1-163L24 in linkage group 3,
             complete sequence
          Length = 107839

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 352   acaaaggcatactttgatga 371
             ||||||||||||||||||||
Sbjct: 54062 acaaaggcatactttgatga 54081
to top
>emb|BX510318.4| Mouse DNA sequence from clone RP23-29O1 on chromosome 4, complete
             sequence
          Length = 58041

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 249   cacaaaggccatgggagatt 268
             ||||||||||||||||||||
Sbjct: 32843 cacaaaggccatgggagatt 32862
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 287      atttctctgttttgcccact 306
                ||||||||||||||||||||
Sbjct: 10996294 atttctctgttttgcccact 10996275
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 36      tcgccgccgccgacccctct 55
               ||||||||||||||||||||
Sbjct: 1494441 tcgccgccgccgacccctct 1494460
to top
>emb|BX000498.1|CNS08CDO Oryza sativa chromosome 12, . BAC OSJNBa0009F13 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 183385

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 36     tcgccgccgccgacccctct 55
              ||||||||||||||||||||
Sbjct: 131291 tcgccgccgccgacccctct 131272
to top
>emb|AL808116.6| Mouse DNA sequence from clone RP23-97H1 on chromosome X, complete
              sequence
          Length = 200519

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 249    cacaaaggccatgggagatt 268
              ||||||||||||||||||||
Sbjct: 190465 cacaaaggccatgggagatt 190446


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,356,497
Number of Sequences: 3902068
Number of extensions: 3356497
Number of successful extensions: 64883
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64533
Number of HSP's gapped (non-prelim): 345
length of query: 446
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 424
effective length of database: 17,147,199,772
effective search space: 7270412703328
effective search space used: 7270412703328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top