ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl47a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC... 31 1.0
2METB_HERAU (P24601) Probable cystathionine gamma-synthase (EC 2.... 28 6.5
3ACSA2_PSEPK (Q88DW6) Acetyl-coenzyme A synthetase 2 (EC 6.2.1.1)... 28 6.5
4SC10A_RAT (Q62968) Sodium channel protein type 10 alpha subunit ... 28 8.5
5SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (S... 28 8.5

>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)|
           (LOX-100) (LOX2:Hv:1)
          Length = 936

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +1

Query: 142 MLTATKPLVGGAC 180
           MLTATKPLVGGAC
Sbjct: 1   MLTATKPLVGGAC 13



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>METB_HERAU (P24601) Probable cystathionine gamma-synthase (EC 2.5.1.48) (CGS)|
           (O-succinylhomoserine (thiol)-lyase) (Fragment)
          Length = 319

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 159 LGRRQHRGYATVLAIALRDGAEGCTALV 76
           L R Q RG+  +++I L+ GAE   A+V
Sbjct: 287 LAREQMRGFGGMISILLKGGAEAANAMV 314



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>ACSA2_PSEPK (Q88DW6) Acetyl-coenzyme A synthetase 2 (EC 6.2.1.1) (Acetate--CoA|
           ligase 2) (Acyl-activating enzyme 2)
          Length = 644

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 109 TRWGGRLHRLGWFRPS*TVQPCPGRSGKEEVMEGS 5
           T W  +  RL W +P  +VQ C   +GK    +G+
Sbjct: 37  TFWAEQAKRLDWIKPWSSVQQCDLHTGKARWFDGA 71



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>SC10A_RAT (Q62968) Sodium channel protein type 10 alpha subunit (Sodium|
           channel protein type X alpha subunit) (Voltage-gated
           sodium channel alpha subunit Nav1.8) (Peripheral nerve
           sodium channel 3) (Sensory neuron sodium channel)
          Length = 1956

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +3

Query: 63  LGRNQPRRCNLPPHRVAQ*PTP*RTHDADGDQAASRGRVCRAVVXGPAED 212
           LGR   +   LP   + Q P P R H  +G      G +      GPA D
Sbjct: 538 LGRGAGQTGPLPRSPLPQSPNPGRRHGEEGQLGVPTGELTAGAPEGPALD 587



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>SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2) (Clk4-associating SR-related
           protein)
          Length = 653

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 21/61 (34%), Positives = 24/61 (39%)
 Frame = -2

Query: 211 SSAGPXTTARHTRPRLAAWSPSASWVRYGVGYCATRWGGRLHRLGWFRPS*TVQPCPGRS 32
           S  G   + RH R R  +WS S S  R    Y  +R  GR H  G  R        P R 
Sbjct: 383 SRRGYYRSGRHARSRSRSWSRSRSRSR---RYSRSRSRGRRHSDGGSRDGHRYSRSPARR 439

Query: 31  G 29
           G
Sbjct: 440 G 440


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,588,271
Number of Sequences: 219361
Number of extensions: 593120
Number of successful extensions: 1353
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1353
length of database: 80,573,946
effective HSP length: 47
effective length of database: 70,263,979
effective search space used: 1686335496
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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