ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl47a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible l... 337 8e-90
2ref|NM_102798.1| Arabidopsis thaliana EMB2279 AT1G30610 (EMB2279... 44 0.17
3gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 2.7
4gb|AC146383.4| Pan troglodytes BAC clone RP43-125D18 from 7, com... 40 2.7
5emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 2.7
6gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 2.7
7gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 2.7
8gb|AC006960.1|AC006960 Homo sapiens clone RP11-182J23 from 7p14-... 40 2.7
9gb|U90140.1|CBU90140 Citrobacter braakii TyrR (tyrR) gene, compl... 40 2.7

>gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible lipoxygenase 2 mRNA,
           complete cds
          Length = 3054

 Score =  337 bits (170), Expect = 8e-90
 Identities = 175/177 (98%)
 Strand = Plus / Plus

                                                                       
Query: 37  tgccagggcagggttgcacagtctagctaggtcgaaaccaaccaaggcggtgcaaccttc 96
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1   tgccagggcagggttgcacagtctagctaggtcgaaaccaaccaagacggtgcaaccttc 60

                                                                       
Query: 97  cgccccatcgcgtagcgcaatagccaacaccgtagcgtacccacgatgctgacggcgacc 156
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cgccccatcgcgtagcgcaatagccaacaccgtagcgtacccacgatgctgacggcgacc 120

                                                                    
Query: 157 aagccgctagtcgggggcgcgtgtgccgcgccgtcgtcgncggcccggcggaggacg 213
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 121 aagccgctagtcgggggcgcgtgtgccgcgccgtcgtcgtcggcccggcggaggacg 177



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>ref|NM_102798.1| Arabidopsis thaliana EMB2279 AT1G30610 (EMB2279) mRNA, complete cds
          Length = 3021

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 10   cttccatcacctcttcctttcctgatctgc 39
            ||||||||||||| |||||||||| |||||
Sbjct: 2689 cttccatcacctcctcctttcctgctctgc 2660



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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 170    ggggcgcgtgtgccgcgccg 189
              ||||||||||||||||||||
Sbjct: 996213 ggggcgcgtgtgccgcgccg 996232



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>gb|AC146383.4| Pan troglodytes BAC clone RP43-125D18 from 7, complete sequence
          Length = 141329

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 22    cttcctttcctgatctgccagggc 45
             |||||||||||||| |||||||||
Sbjct: 31172 cttcctttcctgatgtgccagggc 31149



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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 170     ggggcgcgtgtgccgcgccg 189
               ||||||||||||||||||||
Sbjct: 2313682 ggggcgcgtgtgccgcgccg 2313701



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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                          
Query: 181     gccgcgccgtcgtcgncggcccggcgg 207
               ||||||||||||||  |||||||||||
Sbjct: 4210250 gccgcgccgtcgtccacggcccggcgg 4210224



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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 170     ggggcgcgtgtgccgcgccg 189
               ||||||||||||||||||||
Sbjct: 1861233 ggggcgcgtgtgccgcgccg 1861252



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>gb|AC006960.1|AC006960 Homo sapiens clone RP11-182J23 from 7p14-15, complete sequence
          Length = 179757

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 22     cttcctttcctgatctgccagggc 45
              |||||||||||||| |||||||||
Sbjct: 137738 cttcctttcctgatgtgccagggc 137761



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>gb|U90140.1|CBU90140 Citrobacter braakii TyrR (tyrR) gene, complete cds
          Length = 2046

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 6    gatccttccatcacctcttc 25
            ||||||||||||||||||||
Sbjct: 1761 gatccttccatcacctcttc 1742


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,268,873
Number of Sequences: 3902068
Number of extensions: 1268873
Number of successful extensions: 110158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109842
Number of HSP's gapped (non-prelim): 316
length of query: 215
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 193
effective length of database: 17,147,199,772
effective search space: 3309409555996
effective search space used: 3309409555996
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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