>AMY_THECU (P29750) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase)
          Length = 605

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 27/65 (41%), Positives = 32/65 (49%)
 Frame = +2

Query: 176 TVTVIFKLPYYTQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALVWCGQVSVAAGFT 355
           TVT  F     T +GQ + + GS P LGSW   QG+ L     G   VW G V + AG  
Sbjct: 505 TVTARFHATVTTWYGQEVAVVGSIPELGSWQPAQGVRLR-TDSGTYPVWSGAVDLPAGVG 563

Query: 356 CEYSY 370
            EY Y
Sbjct: 564 FEYKY 568

>AMYG_NEUCR (P14804) Glucoamylase precursor (EC 3.2.1.3) (Glucan|
           1,4-alpha-glucosidase) (1,4-alpha-D-glucan
           glucohydrolase)
          Length = 626

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
 Frame = +2

Query: 179 VTVIFKLPYYTQWGQSLVIAGSAPALGSWSVKQGLSLS-PVHQGNALVWCGQVSVAAGFT 355
           V V F     T +GQ++ + GS  ALG+W+   G++LS   +  +  +W   +++  G +
Sbjct: 526 VLVTFNEKVTTSYGQTVKVVGSIAALGNWAPASGVTLSAKQYSSSNPLWSTTIALPQGTS 585

Query: 356 CEYSYHVVDDHKNVLRWES 412
            +Y Y VV+   +V +WE+
Sbjct: 586 FKYKYVVVNSDGSV-KWEN 603

>AMY_STRLM (P09794) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase)
          Length = 566

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 26/83 (31%), Positives = 37/83 (44%)
 Frame = +2

Query: 167 GKNTVTVIFKLPYYTQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALVWCGQVSVAA 346
           G    +  F +   T WG+++ + G   ALG+W   + L L P       VW   V +AA
Sbjct: 467 GTGQTSASFHVNATTAWGENIYVTGDQAALGNWDPARALKLDPAAYP---VWKLDVPLAA 523

Query: 347 GFTCEYSYHVVDDHKNVLRWESG 415
           G   +Y Y +  D      WESG
Sbjct: 524 GTPFQYKY-LRKDAAGKAVWESG 545

>AMY_STRGR (P30270) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase)
          Length = 566

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 26/83 (31%), Positives = 37/83 (44%)
 Frame = +2

Query: 167 GKNTVTVIFKLPYYTQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALVWCGQVSVAA 346
           G    +  F +   T WG+++ + G   ALG+W   + L L P       VW   V +AA
Sbjct: 467 GTGQTSASFHVNATTAWGENIYVTGDQAALGNWDPARALKLDPAAYP---VWKLDVPLAA 523

Query: 347 GFTCEYSYHVVDDHKNVLRWESG 415
           G   +Y Y +  D      WESG
Sbjct: 524 GTPFQYKY-LRKDAAGKAVWESG 545

>AMYG_ASPOR (P36914) Glucoamylase precursor (EC 3.2.1.3) (Glucan|
           1,4-alpha-glucosidase) (1,4-alpha-D-glucan
           glucohydrolase)
          Length = 612

 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
 Frame = +2

Query: 176 TVTVIFKLPYYTQWGQSLVIAGSAPALGSWSVKQGLSL-SPVHQGNALVWCGQVSVAAGF 352
           TV+V F +   T +G+S+ I GS   LGSW+     +L +  +  +  +W G +++ AG 
Sbjct: 511 TVSVTFAVKATTVYGESIKIVGSISQLGSWNPSSATALNADSYTTDNPLWTGTINLPAGQ 570

Query: 353 TCEYSYHVVDDHKNVLRWES 412
           + EY +  V +    + WES
Sbjct: 571 SFEYKFIRVQN--GAVTWES 588

>AMY_STRVL (P22998) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase)
          Length = 569

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 26/75 (34%), Positives = 35/75 (46%)
 Frame = +2

Query: 191 FKLPYYTQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALVWCGQVSVAAGFTCEYSY 370
           F +   T  GQ++ + G+   LG+W+    L L P       VW   V + AG + EY Y
Sbjct: 478 FNVTATTVVGQNIYVTGNRAELGNWAPASALKLDP---ATYPVWKLTVGLPAGTSFEYKY 534

Query: 371 HVVDDHKNVLRWESG 415
              D   NV  WESG
Sbjct: 535 IRKDAAGNV-TWESG 548

>K1434_HUMAN (Q9NPB8) Protein KIAA1434|
          Length = 672

 Score = 36.2 bits (82), Expect = 0.032
 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +2

Query: 218 GQSLVIAGSAPALGSWSVKQGLSLSPVHQ-GNALVWCGQVSVAAGFTCEYSY 370
           G+   I GS  ALG+W+ +  ++L P +  G +++W   + ++ G + +Y Y
Sbjct: 17  GEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGVSVQYRY 68

>CDGT_BACST (P31797) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 711

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = +2

Query: 209 TQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALV-----WCGQVSVAAGFTCEYSYH 373
           T  GQ++ I G+   LG+W   +  ++ P+   N +V     W   VSV  G T E+ + 
Sbjct: 622 TNLGQNIYIVGNVYELGNWDTSK--AIGPMF--NQVVYSYPTWYIDVSVPEGKTIEFKFI 677

Query: 374 VVDDHKNVLRWESG 415
             D   NV  WESG
Sbjct: 678 KKDSQGNV-TWESG 690

>CDGT_KLEOX (P08704) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 655

 Score = 32.7 bits (73), Expect = 0.36
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = +2

Query: 206 YTQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALVWCGQVSVAAGFTCEY---SYHV 376
           YT  GQS+ I G+ P LG W + + + +SP        W   + + +    E+     + 
Sbjct: 570 YTISGQSVYIIGNIPQLGGWDLTKAVKISPTQYPQ---WSASLELPSDLNVEWKCVKRNE 626

Query: 377 VDDHKNVLRWESG 415
            +   NV  W+SG
Sbjct: 627 TNPTANV-EWQSG 638

>CDGT_BACS8 (P17692) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
           (Raw-starch-digesting amylase)
          Length = 713

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
 Frame = +2

Query: 209 TQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALV-----WCGQVSVAAGFTCEYSYH 373
           T  GQ+L + G+   LG+W   +  ++ P++  N +V     W   VSV AG T E+ + 
Sbjct: 625 TALGQNLYLTGNVSELGNWDPAK--AIGPMY--NQVVYQYPNWYYDVSVPAGKTIEFKF- 679

Query: 374 VVDDHKNVLRWESG 415
            +    + + WE G
Sbjct: 680 -LKKQGSTVTWEGG 692

>CDGT_BAC11 (P30921) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 713

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
 Frame = +2

Query: 209 TQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALV-----WCGQVSVAAGFTCEYSYH 373
           T  GQ++ +AGS   LG+W   +  ++ P++  N ++     W   V+V AG T E+ + 
Sbjct: 625 TALGQNVYLAGSVSELGNWDPAK--AIGPLY--NQVIYQYPTWYYDVTVPAGKTIEFKF- 679

Query: 374 VVDDHKNVLRWESG 415
            +    + + WE G
Sbjct: 680 -LKKQGSTVTWEGG 692

>CDGT2_BACCI (P43379) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 713

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
 Frame = +2

Query: 209 TQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALV-----WCGQVSVAAGFTCEYSYH 373
           T  GQ++ + GS   LG+W   +  ++ P++  N +V     W   VSV AG T E+ + 
Sbjct: 625 TALGQNVYLTGSVSELGNWDPAK--AIGPMY--NQVVYQYPNWYYDVSVPAGKTIEFKF- 679

Query: 374 VVDDHKNVLRWESG 415
            +    + + WE G
Sbjct: 680 -LKKQGSTVTWEGG 692

>CDGT1_BACCI (P30920) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 718

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
 Frame = +2

Query: 209 TQWGQSLVIAGSAPALGSWSVKQGLSLSP-----VHQGNALVWCGQVSVAAGFTCEYSYH 373
           T  GQ+L + G+   LG+WS     ++ P     +HQ     W   VSV AG   E+ + 
Sbjct: 630 TTLGQNLYLTGNVAELGNWST-GSTAIGPAFNQVIHQ--YPTWYYDVSVPAGKQLEFKF- 685

Query: 374 VVDDHKNVLRWESG 415
               + + + WESG
Sbjct: 686 -FKKNGSTITWESG 698

>CDGT_BACS0 (P05618) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 713

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = +2

Query: 209 TQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALV-----WCGQVSVAAGFTCEYSYH 373
           T  GQ++ + G+   LG+W      ++ P++  N +V     W   VSV AG T E+ + 
Sbjct: 625 TALGQNVFLTGNVSELGNWDPNN--AIGPMY--NQVVYQYPTWYYDVSVPAGQTIEFKF- 679

Query: 374 VVDDHKNVLRWESG 415
            +    + + WE G
Sbjct: 680 -LKKQGSTVTWEGG 692

>AMYB_THETU (P19584) Thermophilic beta-amylase precursor (EC 3.2.1.2)|
           (1,4-alpha-D-glucan maltohydrolase)
          Length = 551

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = +2

Query: 209 TQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALVWCGQVSVAAGFTCEYSYHVVDDH 388
           T +GQ++ I GS   LG+W+     +  P    N   W   +++  G   ++    +D  
Sbjct: 465 TYYGQNVYIVGSTSDLGNWNTT--YARGPASCPNYPTWTITLNLLPGEQIQFKAVKIDSS 522

Query: 389 KNVLRWESG 415
            NV  WE G
Sbjct: 523 GNV-TWEGG 530

>CDGT_BACS3 (P09121) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 712

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = +2

Query: 209 TQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALV-----WCGQVSVAAGFTCEYSYH 373
           T  GQ++ + G+   LG+W      ++ P++  N +V     W   VSV AG T E+ + 
Sbjct: 624 TALGQNVFLTGNVSELGNWDPNN--AIGPMY--NQVVYQYPTWYYDVSVPAGQTIEFKF- 678

Query: 374 VVDDHKNVLRWESG 415
            +    + + WE G
Sbjct: 679 -LKKQGSTVTWEGG 691

>OR6B1_HUMAN (O95007) Olfactory receptor 6B1 (Olfactory receptor 7-3) (OR7-3)|
          Length = 311

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +2

Query: 251 ALGSWSVKQGLSLSPVHQGNALVWCGQVSVAAGFTCEYS 367
           ALGSW++  G+SL+ ++  + L +CG  +V   F C+ S
Sbjct: 145 ALGSWAIGFGISLAKIYFISCLSFCGP-NVINHFFCDIS 182

>CDGT2_PAEMA (P31835) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 713

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
 Frame = +2

Query: 179 VTVIFKLPYYTQ-WGQSLVIAGSAPALGSWSVKQGLSLSPVH---QGNALVWCGQVSVAA 346
           VTV FK+   T   GQ++ + G+   LG+W+     ++ P++   + +   W   VSV A
Sbjct: 614 VTVRFKVNNATTALGQNVYLTGNVAELGNWTAAN--AIGPMYNQVEASYPTWYFDVSVPA 671

Query: 347 GFTCEYSYHVVDDHKNVLRWESG 415
               ++ +  V+   + + WE G
Sbjct: 672 NTALQFKFIKVNG--STVTWEGG 692

>CDGT_BACSS (P31747) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 718

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = +2

Query: 209 TQWGQSLVIAGSAPALGSWSVKQGLSLSP-----VHQGNALVWCGQVSVAAGFTCEYSYH 373
           T  GQ++ + G+   LG+WS     ++ P     +HQ     W   VSV AG   E+ + 
Sbjct: 630 TTLGQNIYLTGNVAELGNWST-GSTAIGPAFNQVIHQ--YPTWYYDVSVPAGKELEFKF- 685

Query: 374 VVDDHKNVLRWESG 415
               + + + WE G
Sbjct: 686 -FKKNGSTITWEGG 698

>APBE_CHLMU (Q9PKW2) Thiamine biosynthesis lipoprotein apbE precursor|
          Length = 316

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +2

Query: 203 YYTQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALV 319
           YY +WG  +  +G  P+  SW++    +   +H  N+ +
Sbjct: 194 YYVEWGGEIKTSGKHPSGRSWAIASSATPEILHLNNSSI 232

>RHO_STRLI (P52157) Transcription termination factor rho (EC 3.6.1.-)|
           (ATP-dependent helicase rho)
          Length = 707

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = -2

Query: 352 EAGGDRNLATPDQRVPLVNRA--QGQPLLDAPGPERRRGAGDDEALP 218
           +A   + +  P Q  P VN +  Q  P  DAP   RRR A  D   P
Sbjct: 134 KAAAQQQIEIPGQPTPKVNASAEQAAPADDAPSERRRRRATSDAGSP 180

>QUIA_XANCJ (Q9XD78) Probable quinate dehydrogenase [Pyrroloquinoline-quinone]|
           (EC 1.1.99.25)
          Length = 790

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
 Frame = -2

Query: 346 GGDRNLATPDQRVPLVNRAQGQPLLDAPGP------ERRRGAGDDEALPPLRVVRQL-ED 188
           GG R  A  DQ    +NR+ G+P   +PGP          G G ++ L PL+V  ++   
Sbjct: 159 GGSR-FAALDQ----INRSNGRPAAGSPGPTTPGEIANSDGNGAEDQLTPLQVGEKVFLC 213

Query: 187 HGHRVLPHLFSEQGRRQWR 131
             H  L  L +  G++ WR
Sbjct: 214 TPHNNLIALDASTGKQLWR 232

>RPOD_PSEPU (P52327) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 614

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
 Frame = -2

Query: 340 DRNLATPDQRVPLVNRAQGQPLLDAPGPERRRGAGDDEALPPLRVVRQLEDHGHRVLPHL 161
           D N+A P + VP+          +A   E     GDDE  P   + R  +       P  
Sbjct: 170 DDNIAAPTEEVPIPGTKAAAAKEEADDDEEESEGGDDEEEPKAALTRSSQPSVSVRYPSS 229

Query: 160 FSE-QGRRQWR 131
           FS+ QG  + R
Sbjct: 230 FSDHQGPEEKR 240

>GEMI5_HUMAN (Q8TEQ6) Gem-associated protein 5 (Gemin5)|
          Length = 1508

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 244 GAGDDEALPPLRVVRQLEDHGHRVLPHLFS 155
           GAG+    PP RV+ +L  H  RV    FS
Sbjct: 44  GAGESPGTPPFRVIGELVGHTERVSGFTFS 73

>DTX1_HUMAN (Q86Y01) Protein deltex-1 (Deltex-1) (Deltex1) (hDTX1)|
          Length = 620

 Score = 24.3 bits (51), Expect(2) = 8.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 295 RAQGQPLLDAPGPERRRGAGDDEALPP 215
           R  GQ  L+ PGP+R        ++PP
Sbjct: 287 RTPGQNNLNRPGPQRTTSVSARASIPP 313



 Score = 22.3 bits (46), Expect(2) = 8.4
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 338 PKPGHTRPARSPGEPG 291
           P P    P RSPG PG
Sbjct: 269 PAPPPGAPPRSPGAPG 284

>YOR1_BHV1S (Q08104) Hypothetical 16.1 kDa protein (ORF1)|
          Length = 148

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
 Frame = -2

Query: 322 PDQRVPLVNRAQGQPLL---DAPG--PERRRGAGDDEALP----PLRVVRQLEDHGHRVL 170
           P    P+V     +PLL    APG  P+R  GA   E +P    PL+  RQL D     L
Sbjct: 57  PPDYFPVV--PSSKPLLVKVPAPGASPDRTGGAVHFECVPAPRRPLQFFRQLYDGTFVKL 114

Query: 169 PHLFSEQ 149
           PH F ++
Sbjct: 115 PHNFPDE 121

>SP21_STIAU (Q06823) Spore protein SP21|
          Length = 188

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 223 EPRHRRLRAGARVLERQAGAVPEPGSPGERAGLVWPGF 336
           +P+  ++ +     +    A P P  PG  A L WPGF
Sbjct: 150 QPKRIQVASSGTEQKEHIKAYPAPAEPGLAAPLGWPGF 187

>N4BP3_HUMAN (O15049) NEDD4-binding protein 3 (N4BP3)|
          Length = 544

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +1

Query: 172 EHGDRDLQAAVLHAMGAEPRHRRLRAGARVLERQAGAVPEPGSPG 306
           E  +R+LQ   L    A+   RRLR   + L  Q G  PEP +PG
Sbjct: 313 ERSERNLQ---LQLFMAQQEQRRLR---KELRAQQGLAPEPRAPG 351

>Y3475_BRAJA (Q89PK5) Hypothetical transport protein bll3475|
          Length = 516

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +1

Query: 169 EEHGDRDLQAAVLHAMGAEPRHR----RLRAGARVLERQAGAVPEPG 297
           +EH    L  + + A  A P HR    R+R G RVL+ + G +  PG
Sbjct: 226 DEHSP--LIGSTVAAAEARPEHRLFIHRIRRGERVLQAEPGTILAPG 270


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,863,798
Number of Sequences: 219361
Number of extensions: 1139846
Number of successful extensions: 4540
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 4092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4535
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)