>PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3|
          Length = 981

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = -1

Query: 363 RVPHHQLLISRYHSLVL-----TRSRPHPPQSHCLPVPKN 259
           +V HHQLL+ +    +      + S+  PP  HC+P+P +
Sbjct: 316 KVSHHQLLLQQQQQQIQPITLQSPSQDPPPSQHCIPLPNH 355

>AMEL_MONDO (Q28462) Amelogenin|
          Length = 202

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -1

Query: 411 HHCLVYICSDNGSWTHRVPHHQLLISRYHSLVLTRSRPHPPQSHCLPVP 265
           HH ++ + S   S +H +P       ++H  ++   +P PPQ   +PVP
Sbjct: 47  HHQIIPVLSQQHSPSHSLP------PQHHIPIMAAQQPAPPQQPVMPVP 89

>MCM7_XENLA (Q91876) DNA replication licensing factor MCM7 (CDC47 homolog)|
           (x.MCM7)
          Length = 720

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +3

Query: 153 NSPFSAGSEPHPLHGRDSSLKTVEGNLQAAAAMASRF 263
           N+  S  +  +P +GR +  KTVE N+Q  AA+ SRF
Sbjct: 478 NARCSILAAANPAYGRYNPKKTVEQNIQLPAALLSRF 514

>SYH_PORPU (P51348) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 430

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 214 RQLKVIYKQQQPWRLVFGD----RETVTLRRMWTRSSQNKGVIARNQKL 348
           +QLK  +K++    L+ GD    +ET+T++ M+T+  +N  +I    K+
Sbjct: 366 KQLKQAHKKRAIACLILGDNEIQQETITIKWMYTQEQENMSIIEFKNKI 414

>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein type 3|
          Length = 1333

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 348  QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 247
            Q  +   H+  + +SR H P     P+P +E PW
Sbjct: 951  QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984

>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein type 2|
          Length = 1333

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 348  QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 247
            Q  +   H+  + +SR H P     P+P +E PW
Sbjct: 951  QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984

>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein type 1|
          Length = 1333

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 348  QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 247
            Q  +   H+  + +SR H P     P+P +E PW
Sbjct: 951  QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984

>IF38_ARATH (O49160) Eukaryotic translation initiation factor 3 subunit 8 (eIF3|
           p110) (eIF3c) (p105)
          Length = 900

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = +3

Query: 321 GSDSEKS-----EAGDGGRDGSKNRYLNKYTQDSDDSDTESHRVIRSLK 452
           GS+SE       E  +   D   NRYL   ++D DD+DT+  RV++  K
Sbjct: 10  GSESEDESDYEVEVNEVQNDDVNNRYLQSGSEDDDDTDTK--RVVKPAK 56

>POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1776

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 16/48 (33%)
 Frame = -1

Query: 357 PHHQLLISRY------HSLVLTRSRPHPPQS----------HCLPVPK 262
           PH  L +S+       HSL++TR  PH P S          +CLP+P+
Sbjct: 227 PHLNLSVSKLESWGPVHSLLITRGLPHLPSSEKQQVSFHIPNCLPLPE 274

>AMELY_PANTR (Q861X8) Amelogenin, Y isoform precursor (Fragment)|
          Length = 203

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -1

Query: 411 HHCLVYICSDNGSWTHRVPHHQLLISRYHSLVLTRSRPHPPQSHCLPVPKNET 253
           HH ++ + S     TH +  H      +H  V+   +P  PQ   +PVP  ++
Sbjct: 77  HHQIIPVVSQQHPLTHTLQSH------HHIPVVPAQQPRVPQQAMMPVPGQQS 123

>RELN_MOUSE (Q60841) Reelin precursor (EC 3.4.21.-) (Reeler protein)|
          Length = 3461

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -1

Query: 453  PSTSESRGGSQYQSHHCLVYICSDNGSW---THRVPHH 349
            PS+S S G S +Q H   +Y   ++ SW   T ++P H
Sbjct: 3162 PSSSNSIGCSPFQFHEATIYNAVNSSSWKRITIQLPDH 3199

>RELN_RAT (P58751) Reelin precursor (EC 3.4.21.-)|
          Length = 3462

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -1

Query: 453  PSTSESRGGSQYQSHHCLVYICSDNGSW---THRVPHH 349
            PS+S S G S +Q H   +Y   ++ SW   T ++P H
Sbjct: 3163 PSSSNSIGCSPFQFHEATIYNAVNSSSWKRITIQLPDH 3200

>HEMA_CVMA5 (P31615) Hemagglutinin-esterase precursor (EC 3.1.1.53) (HE) (E3|
           glycoprotein)
          Length = 428

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -3

Query: 265 QKRDAMAAAACKLPSTVFKLESRPWSG*GSDPAENGE 155
           ++ D M AAAC+LP   F+  S  +SG G+  A +G+
Sbjct: 309 RQSDNMTAAACQLPYCFFRNTSANYSG-GTHDAHHGD 344


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,704,773
Number of Sequences: 219361
Number of extensions: 941199
Number of successful extensions: 4259
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4247
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)