ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl46h06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC135920.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0015G13, complete sequence Length = 143966 Score = 46.1 bits (23), Expect = 0.049 Identities = 26/27 (96%) Strand = Plus / Minus Query: 151 tcccgggcggcgcccccgatcggcggc 177 ||||||||||||||||||| ||||||| Sbjct: 17630 tcccgggcggcgcccccgaacggcggc 17604
>ref|XM_425435.1| PREDICTED: Gallus gallus similar to KIAA1095 protein (LOC427861), mRNA Length = 2928 Score = 46.1 bits (23), Expect = 0.049 Identities = 23/23 (100%) Strand = Plus / Plus Query: 141 cgccggctcctcccgggcggcgc 163 ||||||||||||||||||||||| Sbjct: 1045 cgccggctcctcccgggcggcgc 1067
>gb|AC130732.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0708D12, complete sequence Length = 172647 Score = 46.1 bits (23), Expect = 0.049 Identities = 26/27 (96%) Strand = Plus / Minus Query: 151 tcccgggcggcgcccccgatcggcggc 177 ||||||||||||||||||| ||||||| Sbjct: 146246 tcccgggcggcgcccccgaacggcggc 146220
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.049 Identities = 26/27 (96%) Strand = Plus / Minus Query: 151 tcccgggcggcgcccccgatcggcggc 177 ||||||||||||||||||| ||||||| Sbjct: 6315891 tcccgggcggcgcccccgaacggcggc 6315865
>ref|XM_875683.1| PREDICTED: Bos taurus hypothetical protein LOC614001 (LOC614001), mRNA Length = 663 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Plus Query: 132 cgtcggcggcgccggctcctcccggg 157 ||||||| |||||||||||||||||| Sbjct: 203 cgtcggccgcgccggctcctcccggg 228
>gb|J00182.1|HUMHBA1 Homo sapiens hemoglobin zeta (HBZ) gene, exons 1 through 3 and complete cds Length = 2685 Score = 42.1 bits (21), Expect = 0.76 Identities = 24/25 (96%) Strand = Plus / Minus Query: 95 cccctccccgcgacccggccccgcc 119 |||||||||||||||| |||||||| Sbjct: 2081 cccctccccgcgaccccgccccgcc 2057
>ref|XM_808031.1| Trypanosoma cruzi strain CL Brener retrotransposon hot spot (RHS) protein (Tc00.1047053511587.100) partial mRNA Length = 2793 Score = 42.1 bits (21), Expect = 0.76 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 ccattcccgtcccctccccgc 105 ||||||||||||||||||||| Sbjct: 1114 ccattcccgtcccctccccgc 1094
>ref|XM_813302.1| Trypanosoma cruzi strain CL Brener retrotransposon hot spot (RHS) protein (Tc00.1047053506961.160) partial mRNA Length = 3027 Score = 42.1 bits (21), Expect = 0.76 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 ccattcccgtcccctccccgc 105 ||||||||||||||||||||| Sbjct: 1381 ccattcccgtcccctccccgc 1361
>emb|AL590128.11| Human DNA sequence from clone RP11-312B8 on chromosome 1 Contains a novel gene, the 5' end of the CAMTA1 gene for calmodulin binding transcription activator 1, a ribosomal protein L37 (RPL37) pseudogene and a CpG island, complete sequence Length = 204394 Score = 42.1 bits (21), Expect = 0.76 Identities = 36/41 (87%) Strand = Plus / Plus Query: 106 gacccggccccgccggatctcgcggacgtcggcggcgccgg 146 ||||||||||||||||| || ||| | ||||||||||||| Sbjct: 9009 gacccggccccgccggacatcccgggcatcggcggcgccgg 9049
>gb|DQ431198.1| Homo sapiens interleukin 9 receptor (IL9Rps) pseudogene, complete sequence; and DNA-directed RNA polymerases III 12.5 kDa polypeptide (POLR3K), U11/U12 snRNP 25 kDa protein (C16orf33), RHBDG1 (C16orf8), DNA-3-methyladenine glycosylase (MPG), -14 gene protein (C16orf35), hemoglobin zeta subunit (HBZ), HBD (HBD), alpha globin (HBA2), alpha globin (HBA1), theta globin (HBQ1), and putative RNA-binding protein Luc7-like 1 (LUC7L) genes, complete cds Length = 214426 Score = 42.1 bits (21), Expect = 0.76 Identities = 24/25 (96%) Strand = Plus / Minus Query: 95 cccctccccgcgacccggccccgcc 119 |||||||||||||||| |||||||| Sbjct: 124238 cccctccccgcgaccccgccccgcc 124214
>gb|AC009048.6|AC009048 Homo sapiens chromosome 16 clone RP11-211H13, complete sequence Length = 163844 Score = 42.1 bits (21), Expect = 0.76 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 tcctcccgggcggcgcccccg 168 ||||||||||||||||||||| Sbjct: 135450 tcctcccgggcggcgcccccg 135430
>gb|AC010654.8|AC010654 Homo sapiens chromosome 16 clone RP11-486I11, complete sequence Length = 148412 Score = 42.1 bits (21), Expect = 0.76 Identities = 21/21 (100%) Strand = Plus / Plus Query: 148 tcctcccgggcggcgcccccg 168 ||||||||||||||||||||| Sbjct: 70486 tcctcccgggcggcgcccccg 70506
>gb|AC007226.3|AC007226 Homo sapiens chromosome 16 clone RPCI-11_520B23, complete sequence Length = 159613 Score = 42.1 bits (21), Expect = 0.76 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 tcctcccgggcggcgcccccg 168 ||||||||||||||||||||| Sbjct: 77935 tcctcccgggcggcgcccccg 77915
>gb|AY714813.1| Cercopithecine herpesvirus 2, complete genome Length = 150715 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 tctcgcggacgtcggcggcg 142 |||||||||||||||||||| Sbjct: 107375 tctcgcggacgtcggcggcg 107356 Score = 40.1 bits (20), Expect = 3.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 115 ccgccggatctcgcggacgtcggcggcg 142 ||||||| ||||||||||||||||||| Sbjct: 55489 ccgccggcgctcgcggacgtcggcggcg 55516
>ref|XM_482484.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1278 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 gacgtcggcggcgccggctcctcc 153 ||||||| |||||||||||||||| Sbjct: 489 gacgtcgccggcgccggctcctcc 512
>ref|XM_473844.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2910 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 cgcggacgtcggcggcgccg 145 |||||||||||||||||||| Sbjct: 229 cgcggacgtcggcggcgccg 210
>ref|XM_613709.2| PREDICTED: Bos taurus similar to egl nine homolog 1 (LOC534075), mRNA Length = 3985 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 cggcggccgcgtccccgccc 190 |||||||||||||||||||| Sbjct: 143 cggcggccgcgtccccgccc 162
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 gggacccggagcgcgtgagc 231 |||||||||||||||||||| Sbjct: 242133 gggacccggagcgcgtgagc 242114
>emb|AL139805.15| Human DNA sequence from clone RP3-323K23 on chromosome 6 Contains the 5' end of the ENPP1 gene for ectonucleotide pyrophosphatase/phosphodiesterase 1, a novel pseudogene and a pseudogene (KIAA0231), complete sequence Length = 34002 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 ccgtcccctccccgcgacccggcc 114 |||||||||||||||| ||||||| Sbjct: 14390 ccgtcccctccccgcgccccggcc 14367
>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10, complete sequence Length = 150551 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 cgcggacgtcggcggcgccg 145 |||||||||||||||||||| Sbjct: 50318 cgcggacgtcggcggcgccg 50337
>gb|AC027575.13| Homo sapiens chromosome 18, clone RP11-162A12, complete sequence Length = 165447 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 ggctcctcccgggcggcgcccccg 168 |||||||||||| ||||||||||| Sbjct: 72260 ggctcctcccggacggcgcccccg 72283
>gb|AF396754.1| Bos taurus isolate BSC MHC class I antigen gene, complete cds Length = 3667 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 cgccggctcctcccgggcgg 160 |||||||||||||||||||| Sbjct: 1081 cgccggctcctcccgggcgg 1062
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 ccgcccatgctcgtcgcggc 204 |||||||||||||||||||| Sbjct: 1987225 ccgcccatgctcgtcgcggc 1987244
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 cgcggacgtcggcggcgccg 145 |||||||||||||||||||| Sbjct: 30952946 cgcggacgtcggcggcgccg 30952965
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 gacgtcggcggcgccggctcctcc 153 ||||||| |||||||||||||||| Sbjct: 20521947 gacgtcgccggcgccggctcctcc 20521970
>dbj|AB008648.1| Bos taurus gene for Bovine MHC class I heavy chain, partial cds, clone MP-1.2g Length = 698 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 cgccggctcctcccgggcgg 160 |||||||||||||||||||| Sbjct: 390 cgccggctcctcccgggcgg 371
>dbj|AB008638.1| Bos taurus gene for MHC class I heavy chain, partial cds, clone W1.13g Length = 698 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 cgccggctcctcccgggcgg 160 |||||||||||||||||||| Sbjct: 390 cgccggctcctcccgggcgg 371
>dbj|AB008611.1| Bos taurus gene for MHC class I heavy chain, partial cds, clone no.23-4g Length = 699 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 cgccggctcctcccgggcgg 160 |||||||||||||||||||| Sbjct: 391 cgccggctcctcccgggcgg 372
>dbj|AB008608.1| Bos taurus gene for MHC class I heavy chain, partial cds, clone P5655.4g Length = 696 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 cgccggctcctcccgggcgg 160 |||||||||||||||||||| Sbjct: 389 cgccggctcctcccgggcgg 370
>dbj|AB008607.1| Bos taurus gene for MHC class I heavy chain, partial cds, clone 303F.10g Length = 1026 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 cgccggctcctcccgggcgg 160 |||||||||||||||||||| Sbjct: 737 cgccggctcctcccgggcgg 718
>dbj|AB008602.1| Bos taurus gene for MHC class I heavy chain, partial cds, clone MP-4.13g Length = 698 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 cgccggctcctcccgggcgg 160 |||||||||||||||||||| Sbjct: 390 cgccggctcctcccgggcgg 371
>dbj|AB009359.1| Bos taurus gene for MHC class I heavy chain, partial cds Length = 696 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 cgccggctcctcccgggcgg 160 |||||||||||||||||||| Sbjct: 389 cgccggctcctcccgggcgg 370
>dbj|AB009348.1| Bos taurus gene for MHC class I heavy chain, partial cds Length = 698 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 cgccggctcctcccgggcgg 160 |||||||||||||||||||| Sbjct: 390 cgccggctcctcccgggcgg 371
>dbj|AP005734.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0032E15 Length = 120419 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 gacgtcggcggcgccggctcctcc 153 ||||||| |||||||||||||||| Sbjct: 25908 gacgtcgccggcgccggctcctcc 25931
>dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0456B03 Length = 152973 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 gacgtcggcggcgccggctcctcc 153 ||||||| |||||||||||||||| Sbjct: 152577 gacgtcgccggcgccggctcctcc 152600
>gb|DQ157381.1| Bubalus bubalis clone Hinf I-CD nonfunctional MHC class I antigen (BuLA-A) gene, exons 4 and 5 Length = 559 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 cgccggctcctcccgggcgg 160 |||||||||||||||||||| Sbjct: 222 cgccggctcctcccgggcgg 203
>gb|DQ157380.1| Bubalus bubalis clone Hinf I-AB nonfunctional MHC class I antigen (BuLA-A) gene, exons 4 and 5 Length = 559 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 cgccggctcctcccgggcgg 160 |||||||||||||||||||| Sbjct: 229 cgccggctcctcccgggcgg 210
>gb|DQ157379.1| Bubalus bubalis clone Hinf I-AC nonfunctional MHC class I antigen (BuLA-A) gene, exons 4 and 5 Length = 559 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 cgccggctcctcccgggcgg 160 |||||||||||||||||||| Sbjct: 252 cgccggctcctcccgggcgg 233
>gb|AY894413.1| Bos taurus x Bos indicus clone pTZ57R-BoLA-A-7 MHC class I antigen (BoLA-A) gene, exons 2, 3 and partial cds Length = 714 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 cgccggctcctcccgggcgg 160 |||||||||||||||||||| Sbjct: 404 cgccggctcctcccgggcgg 385
>gb|AY894408.1| Bubalus bubalis clone pTZ57R-BuLA-A-2 MHC class I antigen (BuLA-A) gene, exons 2, 3 and partial cds Length = 713 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 cgccggctcctcccgggcgg 160 |||||||||||||||||||| Sbjct: 403 cgccggctcctcccgggcgg 384
>gb|AY894407.1| Bubalus bubalis clone pTZ57R-BuLA-A-1 MHC class I antigen (BuLA-A) gene, exons 2, 3 and partial cds Length = 713 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 cgccggctcctcccgggcgg 160 |||||||||||||||||||| Sbjct: 403 cgccggctcctcccgggcgg 384
>gb|AF100924.1|AF100924 Homo sapiens PC1 gene, promoter, partial sequence Length = 646 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 ccgtcccctccccgcgacccggcc 114 |||||||||||||||| ||||||| Sbjct: 404 ccgtcccctccccgcgccccggcc 381
>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome Length = 156487 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 tctcgcggacgtcggcggcg 142 |||||||||||||||||||| Sbjct: 109867 tctcgcggacgtcggcggcg 109848
>emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0702G05, complete sequence Length = 134586 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 cgcggacgtcggcggcgccg 145 |||||||||||||||||||| Sbjct: 129950 cgcggacgtcggcggcgccg 129969
>emb|AJ242019.1|HSA242019 Homo sapiens partial PC-1 gene, promoter sequence Length = 646 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 ccgtcccctccccgcgacccggcc 114 |||||||||||||||| ||||||| Sbjct: 404 ccgtcccctccccgcgccccggcc 381
>dbj|AB032016.1| Homo sapiens PDNP1 gene for phosphodiesterase I/nucleotide pyrophosphatase 1, 5' flanking region and partial cds Length = 8007 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 ccgtcccctccccgcgacccggcc 114 |||||||||||||||| ||||||| Sbjct: 6792 ccgtcccctccccgcgccccggcc 6769 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,140,765 Number of Sequences: 3902068 Number of extensions: 1140765 Number of successful extensions: 28413 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28149 Number of HSP's gapped (non-prelim): 264 length of query: 234 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 212 effective length of database: 17,147,199,772 effective search space: 3635206351664 effective search space used: 3635206351664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
