ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl46g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit ... 138 5e-33
2PDE2A_HUMAN (O00408) cGMP-dependent 3',5'-cyclic phosphodiestera... 30 3.0
3STK6_XENLA (Q91820) Serine/threonine-protein kinase Eg2 (EC 2.7.... 28 6.7

>IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34|
           (eIF-(iso)4F p82-34)
          Length = 788

 Score =  138 bits (348), Expect = 5e-33
 Identities = 71/89 (79%), Positives = 75/89 (84%)
 Frame = +3

Query: 156 MTTDQPVISLXXXXXXXXXXXXXLFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLHFET 335
           MTTDQPVISL             LFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLH E+
Sbjct: 1   MTTDQPVISLRPGGGGGGPRGGRLFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLHSES 60

Query: 336 RERIRYSRDQLLDLRKITDISEQILRLQQ 422
           RER+RYSRDQLLDLRKITD++EQILRLQQ
Sbjct: 61  RERVRYSRDQLLDLRKITDVTEQILRLQQ 89



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>PDE2A_HUMAN (O00408) cGMP-dependent 3',5'-cyclic phosphodiesterase (EC|
           3.1.4.17) (Cyclic GMP-stimulated phosphodiesterase)
           (CGS-PDE) (cGSPDE)
          Length = 941

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 11  RSQTEPNPPPREEGKKKLGFLRDFLPGAPPIPCRSSCRGALVGFGTL 151
           RSQ  P   P E   +++ FL+   P  PP PC  S + AL+  G++
Sbjct: 12  RSQQYPAARPAEPRGQQV-FLKPDEPPPPPQPCADSLQDALLSLGSV 57



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>STK6_XENLA (Q91820) Serine/threonine-protein kinase Eg2 (EC 2.7.11.1) (pEg2)|
           (p46Eg265)
          Length = 407

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 5   GERSQTEPNPPPREEGKKKLGFLRDFLPGAP 97
           G   Q + +  P+EEGKKK   L DF  G P
Sbjct: 115 GSTDQGKTSAVPKEEGKKKQWCLEDFEIGRP 145


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,430,462
Number of Sequences: 219361
Number of extensions: 672377
Number of successful extensions: 2681
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2680
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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