ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl46g05 |
|---|---|
| Clone Library Name | barley_pub |
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich| glycoprotein) Length = 620 Score = 25.8 bits (55), Expect(2) = 1.4 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Frame = +3 Query: 3 PASPLLSLPPIRSQIRRPAF-PEPPADLGLDP 95 P SP+ S PP + Q P F P PP + L P Sbjct: 483 PPSPIYSPPPPQVQPLPPTFSPPPPRRIHLPP 514 Score = 23.1 bits (48), Expect(2) = 1.4 Identities = 10/19 (52%), Positives = 10/19 (52%) Frame = +2 Query: 92 PRRIAAPTRDSRDPIPPHP 148 PRRI P R P PP P Sbjct: 507 PRRIHLPPPPHRQPRPPTP 525
>PEP_DROME (P41073) Zinc finger protein on ecdysone puffs| Length = 716 Score = 29.3 bits (64), Expect = 2.9 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%) Frame = -1 Query: 159 NLAAGCGGIGSRESRVGAAIRRG-----RVPDLRGAQEMRGGGFESELGGERGEG 10 +L G GG+G+R R G + RG R+ + RG +GGGF++ G G G Sbjct: 107 DLPRGGGGMGNRNQRGGPMVSRGGGAGNRLNNRRG----QGGGFQNR--GATGSG 155
>SO2B1_RAT (Q9JHI3) Solute carrier organic anion transporter family member 2B1| (Solute carrier family 21 member 9) (Organic anion transporter moatp1) Length = 682 Score = 28.9 bits (63), Expect = 3.8 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Frame = +1 Query: 40 LKSAAPHFLSPPQIWDSTPPDRRAD--AGLARSDPAAPS 150 L A PHF+S P +D + PDR D A L AP+ Sbjct: 122 LLMALPHFISEPYRYDHSSPDRSQDFEASLCLPTTMAPA 160
>X_WHV1 (P03167) Trans-activating protein X| Length = 141 Score = 28.9 bits (63), Expect = 3.8 Identities = 15/34 (44%), Positives = 16/34 (47%) Frame = +3 Query: 3 PASPLLSLPPIRSQIRRPAFPEPPADLGLDPAGS 104 PA +L L P SQ P FP P A PA S Sbjct: 11 PARDVLLLRPFGSQSSGPPFPRPSAGSAASPASS 44
>FOG1_MOUSE (O35615) Zinc finger protein ZFPM1 (Zinc finger protein multitype| 1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1) Length = 995 Score = 28.9 bits (63), Expect = 3.8 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = +3 Query: 3 PASPLLSLPPIRSQIRRPAFPEPPADLGLDPAGSP 107 PA+P L+ PP+R++ RR + E PA PA P Sbjct: 739 PAAPALTAPPVRTRRRRKLY-ELPAAGAPPPAAGP 772
>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)| Length = 1386 Score = 28.5 bits (62), Expect = 5.0 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +3 Query: 12 PLLSLPPIRSQIRRPAFPEPPADLGLDP 95 P+L LPP+ S P P P A G+ P Sbjct: 578 PILPLPPLSSATPPPGIPPPGAPQGMPP 605
>ELF4_HUMAN (Q99607) ETS-related transcription factor Elf-4 (E74-like factor 4)| (Myeloid Elf-1-like factor) Length = 663 Score = 28.5 bits (62), Expect = 5.0 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%) Frame = +3 Query: 3 PASPLL--SLPPIRSQIRRPAFPEPPADLGLDPAG 101 P +PL+ LP + + RP P PP G PAG Sbjct: 477 PGAPLILSGLPQLLAGANRPTNPAPPTVTGAGPAG 511
>REPB_ECOLI (Q57154) RepFIB replication protein A| Length = 325 Score = 28.5 bits (62), Expect = 5.0 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%) Frame = +2 Query: 89 RPRRIAAPTRDSRD-PIPPHPAAKLAPQ 169 R R+ AP +S++ P+PP PA K++P+ Sbjct: 273 RRPRLKAPNDESKENPLPPSPAEKVSPE 300
>REP11_ECOLI (Q52347) RepFIB replication protein A| Length = 325 Score = 28.5 bits (62), Expect = 5.0 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%) Frame = +2 Query: 89 RPRRIAAPTRDSRD-PIPPHPAAKLAPQ 169 R R+ AP +S++ P+PP PA K++P+ Sbjct: 273 RRPRLKAPNDESKENPLPPSPAEKVSPE 300
>REP10_ECOLI (Q52219) RepFIB replication protein A| Length = 325 Score = 28.5 bits (62), Expect = 5.0 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%) Frame = +2 Query: 89 RPRRIAAPTRDSRD-PIPPHPAAKLAPQ 169 R R+ AP +S++ P+PP PA K++P+ Sbjct: 273 RRPRLKAPNDESKENPLPPSPAEKVSPE 300
>PG46_MYCTU (P0A690) Hypothetical PE-PGRS family protein PE_PGRS46| Length = 778 Score = 28.5 bits (62), Expect = 5.0 Identities = 19/52 (36%), Positives = 23/52 (44%) Frame = -1 Query: 165 GANLAAGCGGIGSRESRVGAAIRRGRVPDLRGAQEMRGGGFESELGGERGEG 10 GA A G GGIG + G G D GA GG + +GG G+G Sbjct: 453 GAGGAGGAGGIGETDGSAGGVATGGEGGD--GAT----GGVDGGVGGAGGKG 498
>PG46_MYCBO (P0A691) Hypothetical PE-PGRS family protein PE_PGRS46| Length = 778 Score = 28.5 bits (62), Expect = 5.0 Identities = 19/52 (36%), Positives = 23/52 (44%) Frame = -1 Query: 165 GANLAAGCGGIGSRESRVGAAIRRGRVPDLRGAQEMRGGGFESELGGERGEG 10 GA A G GGIG + G G D GA GG + +GG G+G Sbjct: 453 GAGGAGGAGGIGETDGSAGGVATGGEGGD--GAT----GGVDGGVGGAGGKG 498
>HCN3_HUMAN (Q9P1Z3) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 3 Length = 774 Score = 28.1 bits (61), Expect = 6.5 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +3 Query: 3 PASPLLSLPPIRSQIRRPAFPEPPADLGL 89 P S LL+ PP +Q RP PEP GL Sbjct: 740 PPSGLLAKPPRTAQPPRPPVPEPATPRGL 768
>PTF1A_RAT (Q64305) Pancreas transcription factor 1 subunit alpha| (Pancreas-specific transcription factor 1a) (bHLH transcription factor p48) (p48 DNA-binding subunit of transcription factor PTF1) (PTF1-p48) Length = 326 Score = 28.1 bits (61), Expect = 6.5 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = +1 Query: 46 SAAPHFLSPPQIWDSTPPDRRADAGLARSDPAAP 147 SAAPH L+PP + D P+ D+G D AP Sbjct: 75 SAAPHALAPPPLGDPGEPE---DSGSYCCDAGAP 105
>IF2_NITWN (Q3SWP9) Translation initiation factor IF-2| Length = 871 Score = 28.1 bits (61), Expect = 6.5 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +2 Query: 92 PRRIAAPTRDSRDPIPPHPAAKLAPQRRSQRL 187 PR + P +R I P PAAK AP ++ RL Sbjct: 215 PRLVRRPGGPARPVIAPKPAAKPAPAKQRGRL 246
>VCAP_EHV1V (Q6S6S9) Major capsid protein (MCP) (Capsid protein VP5)| Length = 1376 Score = 28.1 bits (61), Expect = 6.5 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 64 LSPPQIWDSTPPDRRADAGLARS 132 L PP IWD P RAD G AR+ Sbjct: 731 LLPPLIWDCDPILHRADMGRARA 753
>VCAP_EHV1B (P28920) Major capsid protein (MCP) (Capsid protein VP5)| Length = 1376 Score = 28.1 bits (61), Expect = 6.5 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 64 LSPPQIWDSTPPDRRADAGLARS 132 L PP IWD P RAD G AR+ Sbjct: 731 LLPPLIWDCDPILHRADMGRARA 753
>PTH_CAUCR (Q9AAV9) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)| Length = 205 Score = 27.7 bits (60), Expect = 8.4 Identities = 14/23 (60%), Positives = 16/23 (69%) Frame = -1 Query: 153 AAGCGGIGSRESRVGAAIRRGRV 85 AAG GI S S+VG A RRGR+ Sbjct: 112 AAGNNGIRSVTSQVGDAFRRGRI 134
>TEGU_EBV (P03186) Large tegument protein| Length = 3149 Score = 27.7 bits (60), Expect = 8.4 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = +3 Query: 12 PLLSLPPIRSQIRRPAFPEPPADLGLDPAGSP 107 P +SLP Q + PA P PP G +P P Sbjct: 2951 PRVSLPVRSRQQQSPAIPLPPMHSGSEPGARP 2982
>ACN1_ACAGO (Q8I948) Acanthoscurrin-1 precursor| Length = 156 Score = 27.7 bits (60), Expect = 8.4 Identities = 16/47 (34%), Positives = 21/47 (44%) Frame = -1 Query: 147 GCGGIGSRESRVGAAIRRGRVPDLRGAQEMRGGGFESELGGERGEGK 7 G GG+G + G + G + RG GGG+ GG G GK Sbjct: 107 GGGGLGGGKGLGGGGLGGGGLGGGRGGGYGGGGGYGGGYGGGYGGGK 153
>SP110_HUMAN (Q9HB58) Sp110 nuclear body protein (Speckled 110 kDa)| (Transcriptional coactivator Sp110) (Interferon-induced protein 41/75) Length = 689 Score = 27.7 bits (60), Expect = 8.4 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +3 Query: 3 PASPLLSLPPIRSQIRRPAFPEPPADLGLDPA 98 P SPL S+P IR P PE P ++ P+ Sbjct: 242 PHSPLGSMPEIRDNSPEPNDPEEPQEVSSTPS 273
>FBRL_HUMAN (P22087) Fibrillarin (34 kDa nucleolar scleroderma antigen)| Length = 321 Score = 27.7 bits (60), Expect = 8.4 Identities = 19/46 (41%), Positives = 19/46 (41%) Frame = -1 Query: 147 GCGGIGSRESRVGAAIRRGRVPDLRGAQEMRGGGFESELGGERGEG 10 G G G R R G RGR RG GGG GG RG G Sbjct: 17 GFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGG 62 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.131 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,051,244 Number of Sequences: 219361 Number of extensions: 329026 Number of successful extensions: 2208 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 1997 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2201 length of database: 80,573,946 effective HSP length: 48 effective length of database: 70,044,618 effective search space used: 1681070832 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
